chr5 : 88,948,538 – 88,949,620

1,082 bp 81 TFs 0 linked genes

This 1.1 kb open chromatin element has no linked target genes and is bound by 81 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

81 transcription factors

ARID1A 1 dataset

ChIP HAP1 GSE108387.ARID1A.HAP1 165 bp overlap

ATF6 1 dataset

Motif DE_12h DE_12h-ATF6_MA1466.2 13 bp overlap

BHLHE22 1 dataset

Motif DE_12h DE_12h-BHLHE22_MA1635.2 6 bp overlap

BRD4 1 dataset

ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 224 bp overlap

CASZ1 1 dataset

ChIP rhabdomyosarcoma_Trametinib GSE126143.CASZ1.rhabdomyosarcoma_Trametinib 230 bp overlap

CHD7 1 dataset

ChIP H1 ENCFF126NLU 503 bp overlap

CREB3 1 dataset

Motif DE_12h DE_12h-CREB3_MA0638.2 12 bp overlap

CTCF 3 datasets

ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 546 bp overlap

ChIP T-47D_NaCl-triptolide GSE111923.CTCF.T-47D_NaCl-triptolide 300 bp overlap

ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 86 bp overlap

Cebpa 1 dataset

ChIP BLaER1 ENCFF896HSY 349 bp overlap

EBF1 3 datasets

Motif DE_12h DE_12h-EBF1_MA0154.5 11 bp overlap

ChIP GM12878 ENCFF167CZS 321 bp overlap

ChIP GM12878 ENCFF813OXE 265 bp overlap

EBF3 2 datasets

Motif DE_12h DE_12h-EBF3_MA1637.2 9 bp overlap

EOMES 1 dataset

Motif DE_12h DE_12h-EOMES_MA0800.2 9 bp overlap

ESR1 1 dataset

ChIP MDA-MB-134-VI_ESTROGEN GSE51022.ESR1.MDA-MB-134-VI_ESTROGEN 235 bp overlap

ESRRA 1 dataset

Motif DE_12h DE_12h-ESRRA_MA0592.4 9 bp overlap

ESRRB 1 dataset

Motif DE_12h DE_12h-ESRRB_MA0141.4 10 bp overlap

EZH1 1 dataset

ChIP ProEs GSE59087.EZH1.ProEs 228 bp overlap

Ebf2 2 datasets

Motif DE_12h DE_12h-Ebf2_MA1604.2 9 bp overlap

Ebf4 1 dataset

Motif DE_12h DE_12h-Ebf4_MA2122.1 11 bp overlap

FOXE1 1 dataset

Motif DE_12h DE_12h-FOXE1_MA1487.3 12 bp overlap

GATA6 3 datasets

ChIP DE_D1 S14-DE-d1-GATA6-exp1 207 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 224 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 146 bp overlap

HNF4A 2 datasets

Motif DE_12h DE_12h-HNF4A_MA0114.5 9 bp overlap

Motif DE_12h DE_12h-HNF4A_MA1494.2 14 bp overlap

HNF4G 1 dataset

Motif DE_12h DE_12h-HNF4G_MA0484.3 9 bp overlap

MEF2D 1 dataset

Motif DE_12h DE_12h-MEF2D_MA0773.1 12 bp overlap

NANOG 9 datasets

ChIP GM23338 ENCSR061DGF.NANOG.GM23338 117 bp overlap

ChIP HUES-8 GSE109524.NANOG.HUES-8 522 bp overlap

ChIP WA01 ERP004238.NANOG.WA01 183 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 290 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 265 bp overlap

ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 369 bp overlap

ChIP hESC GSE18292.NANOG.hESC 179 bp overlap

ChIP hESC GSE18292.NANOG.hESC 151 bp overlap

ChIP hESC GSE18292.NANOG.hESC 112 bp overlap

NBN 1 dataset

ChIP MCF-10A GSE93038.NBN.MCF-10A 214 bp overlap

NHLH1 1 dataset

Motif DE_12h DE_12h-NHLH1_MA0048.3 9 bp overlap

NR1H2::RXRA 1 dataset

Motif DE_12h DE_12h-NR1H2RXRA_MA0115.1 17 bp overlap

NR1I3 1 dataset

Motif DE_12h DE_12h-NR1I3_MA1534.2 8 bp overlap

NR2C1 1 dataset

Motif DE_12h DE_12h-NR2C1_MA1535.2 6 bp overlap

NR2C2 1 dataset

Motif DE_12h DE_12h-NR2C2_MA1536.2 6 bp overlap

NR2F1 1 dataset

Motif DE_12h DE_12h-NR2F1_MA1537.2 13 bp overlap

NR6A1 1 dataset

Motif DE_12h DE_12h-NR6A1_MA1541.2 14 bp overlap

Neurod2 1 dataset

Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap

Nr1H2 1 dataset

Motif DE_12h DE_12h-Nr1H2_MA1996.2 6 bp overlap

Nr1H4 1 dataset

Motif DE_12h DE_12h-Nr1H4_MA1110.3 6 bp overlap

Nr1h3 1 dataset

Motif DE_12h DE_12h-Nr1h3_MA2337.1 6 bp overlap

Olig2 1 dataset

Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap

POU5F1 5 datasets

ChIP GM23338 ENCFF333SNB 311 bp overlap

ChIP HUES-8 GSE109524.POU5F1.HUES-8 529 bp overlap

ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 554 bp overlap

ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 264 bp overlap

ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 391 bp overlap

PPARD 1 dataset

Motif DE_12h DE_12h-PPARD_MA1550.2 14 bp overlap

PRDM1 1 dataset

ChIP HEK293 ENCFF302TBP 206 bp overlap

RAD21 4 datasets

ChIP HAP1 GSE152721.RAD21.HAP1 493 bp overlap

ChIP HAP1 GSE126634.RAD21.HAP1 480 bp overlap

ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 480 bp overlap

ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 407 bp overlap

RNF2 2 datasets

ChIP A-549 ENCSR798EGJ.RNF2.A-549 224 bp overlap

ChIP SYO-1_shRING1A-B GSE139053.RNF2.SYO-1_shRING1A-B 249 bp overlap

RXRA::VDR 1 dataset

Motif DE_12h DE_12h-RXRAVDR_MA0074.1 15 bp overlap

RXRB 1 dataset

Motif DE_12h DE_12h-RXRB_MA0855.1 14 bp overlap

RXRG 2 datasets

Motif DE_12h DE_12h-RXRG_MA0856.1 14 bp overlap

Motif DE_12h DE_12h-RXRG_MA1556.1 14 bp overlap

Rhox11 1 dataset

Motif DE_12h DE_12h-Rhox11_MA0629.2 9 bp overlap

Rxra 1 dataset

Motif DE_12h DE_12h-Rxra_MA0512.2 14 bp overlap

SCRT2 1 dataset

ChIP HEK293 ENCFF711QQB 380 bp overlap

SETDB1 1 dataset

ChIP WN8532 GSE36579.SETDB1.WN8532 238 bp overlap

SMAD2-3 2 datasets

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 198 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 112 bp overlap

SMAD2_3 2 datasets

ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 155 bp overlap

ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 132 bp overlap

SMARCC1 1 dataset

ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 287 bp overlap

SOX2 2 datasets

ChIP hESC GSE18292.SOX2.hESC 103 bp overlap

ChIP hiPSC GSE56567.SOX2.hiPSC 492 bp overlap

SREBF1 1 dataset

Motif DE_12h DE_12h-SREBF1_MA0595.1 10 bp overlap

TBR1 1 dataset

Motif DE_12h DE_12h-TBR1_MA0802.2 9 bp overlap

TBX18 1 dataset

Motif DE_12h DE_12h-TBX18_MA1565.2 9 bp overlap

TBX2 1 dataset

Motif DE_12h DE_12h-TBX2_MA0688.2 9 bp overlap

TBX21 1 dataset

Motif DE_12h DE_12h-TBX21_MA0690.3 10 bp overlap

TBX3 1 dataset

Motif DE_12h DE_12h-TBX3_MA1566.3 9 bp overlap

TEAD1 1 dataset

Motif DE_12h DE_12h-TEAD1_MA0090.4 9 bp overlap

TEAD4 1 dataset

Motif DE_12h DE_12h-TEAD4_MA0809.3 8 bp overlap

TFAP2A 1 dataset

Motif DE_12h DE_12h-TFAP2A_MA0810.2 11 bp overlap

TFAP2B 1 dataset

Motif DE_12h DE_12h-TFAP2B_MA0811.2 11 bp overlap

TFAP2C 1 dataset

Motif DE_12h DE_12h-TFAP2C_MA0524.3 11 bp overlap

TFAP2E 1 dataset

Motif DE_12h DE_12h-TFAP2E_MA1569.2 9 bp overlap

THRB 1 dataset

Motif DE_12h DE_12h-THRB_MA1574.2 13 bp overlap

Tbx6 1 dataset

Motif DE_12h DE_12h-Tbx6_MA1567.3 9 bp overlap

Tcf12 1 dataset

Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap

Twist2 1 dataset

Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap

Vdr 1 dataset

Motif DE_12h DE_12h-Vdr_MA0693.4 7 bp overlap

XBP1 1 dataset

Motif DE_12h DE_12h-XBP1_MA0844.2 11 bp overlap

ZBTB6 1 dataset

Motif DE_12h DE_12h-ZBTB6_MA1581.2 9 bp overlap

ZKSCAN5 1 dataset

Motif DE_12h DE_12h-ZKSCAN5_MA1652.2 9 bp overlap

ZNF143 1 dataset

ChIP HeLa GSE39263.ZNF143.HeLa 296 bp overlap

ZNF189 1 dataset

Motif DE_12h DE_12h-ZNF189_MA1725.2 9 bp overlap

ZNF257 1 dataset

Motif DE_12h DE_12h-ZNF257_MA1710.2 10 bp overlap

ZNF354C 1 dataset

Motif DE_12h DE_12h-ZNF354C_MA0130.1 6 bp overlap

ZNF462 2 datasets

ChIP GM23338 ENCFF896CCA 251 bp overlap

ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 334 bp overlap

ZNF682 1 dataset

Motif DE_12h DE_12h-ZNF682_MA1599.2 11 bp overlap

ZNF816 1 dataset

Motif DE_12h DE_12h-ZNF816_MA1719.2 15 bp overlap

Zfp335 1 dataset

Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap