chr5 : 88,897,693 – 88,898,089
396 bp 66 TFs 1 linked gene
This 396 bp open chromatin element is linked to MEF2C-AS1 and is bound by 66 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
MEF2C-AS1 8.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:88,892,693 – 88,903,089
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
66 transcription factors
Source
Cell type
CHD7 1 dataset
ChIP WA01 ENCSR000AVA.CHD7.WA01 198 bp overlap
CREB1 2 datasets
ChIP GM23338 ENCFF432ZEW 305 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 176 bp overlap
CREM 1 dataset
ChIP WTC11 ENCFF209ZUE 126 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 259 bp overlap
EP300 2 datasets
ChIP WA01 ENCSR000BKK.EP300.WA01 128 bp overlap
ChIP hESC GSE17917.EP300.hESC 181 bp overlap
ERF::FIGLA 2 datasets
Motif DE_12h DE_12h-ERFFIGLA_MA1934.2 13 bp overlap
Motif ES_0h ES_0h-ERFFIGLA_MA1934.2 13 bp overlap
ESR1 1 dataset
ChIP Ishikawa ENCSR000BKL.ESR1.Ishikawa 171 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 396 bp overlap
FIGLA 4 datasets
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
Motif ES_0h ES_0h-FIGLA_MA0820.2 6 bp overlap
Motif ES_0h ES_0h-FIGLA_MA0820.2 6 bp overlap
GRHL2 3 datasets
Motif DE_12h DE_12h-GRHL2_MA1105.3 8 bp overlap
Motif ES_0h ES_0h-GRHL2_MA1105.3 8 bp overlap
ChIP LNCaP GSE80256.GRHL2.LNCaP 241 bp overlap
Gfi1B 2 datasets
Motif DE_12h DE_12h-Gfi1B_MA0483.2 10 bp overlap
Motif ES_0h ES_0h-Gfi1B_MA0483.2 10 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000BNR.HDAC2.WA01 137 bp overlap
Hand1::Tcf3 2 datasets
Motif DE_12h DE_12h-Hand1Tcf3_MA0092.2 9 bp overlap
Motif ES_0h ES_0h-Hand1Tcf3_MA0092.2 9 bp overlap
ISL2 3 datasets
Motif DE_12h DE_12h-ISL2_MA0914.2 6 bp overlap
Motif DE_12h DE_12h-ISL2_MA0914.2 6 bp overlap
Motif ES_0h ES_0h-ISL2_MA0914.2 6 bp overlap
KLF4 1 dataset
ChIP hiPSC GSE56567.KLF4.hiPSC 154 bp overlap
MAX 1 dataset
ChIP WA01 ENCSR000EUP.MAX.WA01 170 bp overlap
MEN1 2 datasets
ChIP ML-2 GSE95511.MEN1.ML-2 190 bp overlap
ChIP RS4-11_DMSO-D3-180110 GSE127507.MEN1.RS4-11_DMSO-D3-180110 207 bp overlap
NANOG 10 datasets
ChIP GM23338 ENCFF065NZG 281 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 314 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 396 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 348 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 171 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 340 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 396 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 331 bp overlap
ChIP hESC GSE18292.NANOG.hESC 300 bp overlap
ChIP hESC GSE20650.NANOG.hESC 227 bp overlap
NIPBL 3 datasets
ChIP hESC GSE64758.NIPBL.hESC 225 bp overlap
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 216 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 275 bp overlap
NUTM1 1 dataset
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 396 bp overlap
Nkx3-1 2 datasets
Motif DE_12h DE_12h-Nkx3-1_MA0124.3 7 bp overlap
Motif ES_0h ES_0h-Nkx3-1_MA0124.3 7 bp overlap
Nkx3-2 1 dataset
Motif DE_12h DE_12h-Nkx3-2_MA0122.4 10 bp overlap
Nr1h3::Rxra 2 datasets
Motif DE_12h DE_12h-Nr1h3Rxra_MA0494.2 16 bp overlap
Motif ES_0h ES_0h-Nr1h3Rxra_MA0494.2 16 bp overlap
PLAG1 2 datasets
Motif DE_12h DE_12h-PLAG1_MA0163.1 14 bp overlap
Motif ES_0h ES_0h-PLAG1_MA0163.1 14 bp overlap
POU1F1 1 dataset
Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap
POU2F1 1 dataset
Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap
POU2F1::SOX2 2 datasets
Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap
Motif ES_0h ES_0h-POU2F1SOX2_MA1962.1 17 bp overlap
POU2F2 1 dataset
Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap
POU2F3 1 dataset
Motif DE_12h DE_12h-POU2F3_MA0627.3 9 bp overlap
POU3F1 1 dataset
Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
POU3F3 3 datasets
Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap
Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap
Motif ES_0h ES_0h-POU3F3_MA0788.1 13 bp overlap
POU3F4 1 dataset
Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap
POU5F1 9 datasets
ChIP BG03 GSE21614.POU5F1.BG03 153 bp overlap
Motif DE_12h DE_12h-POU5F1_MA1115.2 7 bp overlap
ChIP GM23338 ENCFF333SNB 284 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 396 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 240 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 218 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 283 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 206 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 136 bp overlap
POU5F1B 1 dataset
Motif DE_12h DE_12h-POU5F1B_MA0792.1 9 bp overlap
PPARA::RXRA 2 datasets
Motif DE_12h DE_12h-PPARARXRA_MA1148.2 17 bp overlap
Motif ES_0h ES_0h-PPARARXRA_MA1148.2 17 bp overlap
Pou5f1::Sox2 2 datasets
Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap
RAD21 1 dataset
ChIP hiPSC_IIA12 GSE106870.RAD21.hiPSC_IIA12 138 bp overlap
REST 1 dataset
ChIP hiPSC_IB12 GSE106870.REST.hiPSC_IB12 193 bp overlap
SIN3A 1 dataset
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 137 bp overlap
SMAD3 2 datasets
ChIP BG03 GSE21614.SMAD3.BG03 178 bp overlap
ChIP hESC GSE29422.SMAD3.hESC 186 bp overlap
SMARCA4 1 dataset
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 235 bp overlap
SMARCC1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 268 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_shSNAI2 GSE137168.SNAI2.SMS-CTR_shSNAI2 185 bp overlap
SOX2 2 datasets
ChIP hESC GSE18292.SOX2.hESC 170 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 279 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 130 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 194 bp overlap
TBP 3 datasets
ChIP hESC GSE122298.TBP.hESC 158 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 185 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 110 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 251 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 195 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 374 bp overlap
TCF4 2 datasets
Motif DE_12h DE_12h-TCF4_MA0830.3 8 bp overlap
Motif ES_0h ES_0h-TCF4_MA0830.3 8 bp overlap
TCF7L1 1 dataset
Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap
TEAD4 1 dataset
ChIP H1 ENCFF778PAX 245 bp overlap
TFAP2A 1 dataset
Motif DE_12h DE_12h-TFAP2A_MA0003.5 9 bp overlap
TFAP2C 1 dataset
Motif DE_12h DE_12h-TFAP2C_MA0814.3 9 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 232 bp overlap
TRERF1 1 dataset
ChIP WTC11 ENCFF113BUM 238 bp overlap
USF1 1 dataset
ChIP WA01 ENCSR000BIU.USF1.WA01 144 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 143 bp overlap
ZEB1 4 datasets
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
Motif ES_0h ES_0h-ZEB1_MA0103.4 6 bp overlap
Motif ES_0h ES_0h-ZEB1_MA0103.4 6 bp overlap
ZFP64 1 dataset
ChIP HEK293 GSE76494.ZFP64.HEK293 229 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 233 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 297 bp overlap
ZNF684 1 dataset
Motif DE_12h DE_12h-ZNF684_MA1600.2 14 bp overlap
ZNF692 4 datasets
Motif DE_12h DE_12h-ZNF692_MA1986.2 8 bp overlap
Motif DE_12h DE_12h-ZNF692_MA1986.2 8 bp overlap
Motif ES_0h ES_0h-ZNF692_MA1986.2 8 bp overlap
Motif ES_0h ES_0h-ZNF692_MA1986.2 8 bp overlap
ZNF85 2 datasets
Motif DE_12h DE_12h-ZNF85_MA1720.2 12 bp overlap
Motif ES_0h ES_0h-ZNF85_MA1720.2 12 bp overlap
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