chr5 : 61,308,730 – 61,309,558
828 bp 77 TFs 3 linked genes
This 828 bp open chromatin element is linked to ZSWIM6, SMIM15-AS1, and SMIM15 and is bound by 77 transcription factors.
Linked Genes
3 genes
Link type
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ZSWIM6 23.1 kb Distal Multiome
SMIM15-AS1 146.7 kb Distal Multiome+HiCAR
SMIM15 146.7 kb Distal Multiome+HiCAR
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:61,303,730 – 61,314,558
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
77 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP 12Z GSE129781.ARID1A.12Z 125 bp overlap
ASH2L 2 datasets
ChIP VCaP GSE60841.ASH2L.VCaP 160 bp overlap
ChIP VCaP_R1881 GSE60841.ASH2L.VCaP_R1881 255 bp overlap
Arid3a 1 dataset
Motif DE_36h DE_36h-Arid3a_MA0151.1 6 bp overlap
BRD4 1 dataset
ChIP MDA-MB-231_DMSO GSE116879.BRD4.MDA-MB-231_DMSO 251 bp overlap
CASZ1 1 dataset
ChIP rhabdomyosarcoma_DOX GSE126142.CASZ1.rhabdomyosarcoma_DOX 225 bp overlap
CBX1 1 dataset
ChIP Hep-G2 ENCSR819WZE.CBX1.Hep-G2 120 bp overlap
CEBPA 3 datasets
Motif DE_36h DE_36h-CEBPA_MA0102.5 10 bp overlap
Motif DE_48h DE_48h-CEBPA_MA0102.5 10 bp overlap
Motif DE_60h DE_60h-CEBPA_MA0102.5 10 bp overlap
CEBPD 3 datasets
Motif DE_36h DE_36h-CEBPD_MA0836.3 8 bp overlap
Motif DE_48h DE_48h-CEBPD_MA0836.3 8 bp overlap
Motif DE_60h DE_60h-CEBPD_MA0836.3 8 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF896HSY 353 bp overlap
DMRTA1 3 datasets
Motif DE_36h DE_36h-DMRTA1_MA1707.2 10 bp overlap
Motif DE_48h DE_48h-DMRTA1_MA1707.2 10 bp overlap
Motif DE_60h DE_60h-DMRTA1_MA1707.2 10 bp overlap
DMRTC2 3 datasets
Motif DE_36h DE_36h-DMRTC2_MA1479.2 11 bp overlap
Motif DE_48h DE_48h-DMRTC2_MA1479.2 11 bp overlap
Motif DE_60h DE_60h-DMRTC2_MA1479.2 11 bp overlap
ELF3 1 dataset
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 138 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 254 bp overlap
ESR1 1 dataset
ChIP MCF-7_R5020 GSE68355.ESR1.MCF-7_R5020 262 bp overlap
FOSL2 1 dataset
ChIP SK-N-SH ENCSR000BVB.FOSL2.SK-N-SH 247 bp overlap
FOXA1 2 datasets
Motif DE_36h DE_36h-FOXA1_MA0148.5 8 bp overlap
ChIP T-47D_shRNF2_24h GSE137579.FOXA1.T-47D_shRNF2_24h 113 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 828 bp overlap
ChIP DE DE-FOXA2-2 828 bp overlap
GABPA 1 dataset
ChIP VCaP_ETOH GSE49091.GABPA.VCaP_ETOH 147 bp overlap
GATA3 1 dataset
ChIP SK-N-SH ENCFF040SSB 355 bp overlap
GATA4 6 datasets
ChIP DE DE-GATA4-1 639 bp overlap
ChIP DE DE-GATA4-2 797 bp overlap
Motif DE_48h DE_48h-GATA4_MA0482.3 8 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap
ChIP foregut GSE117136.GATA4.foregut 282 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-1 713 bp overlap
ChIP DE DE-GATA6-2 803 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 612 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 322 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 616 bp overlap
GFI1 1 dataset
Motif DE_36h DE_36h-GFI1_MA0038.3 11 bp overlap
GRHL2 4 datasets
ChIP MCF-7 GSE109820.GRHL2.MCF-7 201 bp overlap
ChIP MCF-7-WS8_VEH GSE113092.GRHL2.MCF-7-WS8_VEH 287 bp overlap
ChIP OVCA429 GSE71018.GRHL2.OVCA429 173 bp overlap
ChIP T-47D GSE99680.GRHL2.T-47D 256 bp overlap
Gfi1B 1 dataset
Motif DE_36h DE_36h-Gfi1B_MA0483.2 10 bp overlap
HOXB13 1 dataset
ChIP prostate-cancer_PDX_170-2 GSE130408.HOXB13.prostate-cancer_PDX_170-2 72 bp overlap
Hnf1A 2 datasets
Motif DE_48h DE_48h-Hnf1A_MA1991.2 10 bp overlap
Motif DE_60h DE_60h-Hnf1A_MA1991.2 10 bp overlap
IKZF2 3 datasets
Motif DE_36h DE_36h-IKZF2_MA2326.1 6 bp overlap
Motif DE_48h DE_48h-IKZF2_MA2326.1 6 bp overlap
Motif DE_60h DE_60h-IKZF2_MA2326.1 6 bp overlap
INSM1 3 datasets
Motif DE_36h DE_36h-INSM1_MA0155.1 12 bp overlap
Motif DE_48h DE_48h-INSM1_MA0155.1 12 bp overlap
Motif DE_60h DE_60h-INSM1_MA0155.1 12 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 312 bp overlap
JUND 1 dataset
ChIP SK-N-SH ENCSR000BSK.JUND.SK-N-SH 179 bp overlap
KLF6 1 dataset
Motif DE_48h DE_48h-KLF6_MA1517.2 9 bp overlap
Lef1 2 datasets
Motif DE_48h DE_48h-Lef1_MA0768.3 8 bp overlap
Motif DE_60h DE_60h-Lef1_MA0768.3 8 bp overlap
Lhx3 1 dataset
Motif DE_36h DE_36h-Lhx3_MA0135.2 12 bp overlap
MEIS1 1 dataset
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
MYB 2 datasets
Motif DE_48h DE_48h-MYB_MA0100.4 6 bp overlap
Motif DE_60h DE_60h-MYB_MA0100.4 6 bp overlap
NFIC 1 dataset
ChIP SK-N-SH ENCSR000BSV.NFIC.SK-N-SH 123 bp overlap
Nr2e3 3 datasets
Motif DE_36h DE_36h-Nr2e3_MA0164.2 6 bp overlap
Motif DE_48h DE_48h-Nr2e3_MA0164.2 6 bp overlap
Motif DE_60h DE_60h-Nr2e3_MA0164.2 6 bp overlap
OSR2 2 datasets
Motif DE_48h DE_48h-OSR2_MA1646.2 8 bp overlap
Motif DE_60h DE_60h-OSR2_MA1646.2 8 bp overlap
PBX3 1 dataset
ChIP SK-N-SH ENCFF876BMC 317 bp overlap
PGR 1 dataset
ChIP T-47D_R5020-A1 GSE126859.PGR.T-47D_R5020-A1 140 bp overlap
POU4F2 1 dataset
Motif DE_36h DE_36h-POU4F2_MA0683.2 15 bp overlap
PRDM14 1 dataset
ChIP primordial-germ-cell-like-cell GSE138674.PRDM14.primordial-germ-cell-like-cell 76 bp overlap
Pou5f1::Sox2 2 datasets
Motif DE_48h DE_48h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif DE_60h DE_60h-Pou5f1Sox2_MA0142.1 15 bp overlap
RELA 1 dataset
ChIP KB GSE52469.RELA.KB 107 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 578 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 386 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 531 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 194 bp overlap
SMARCA4 3 datasets
ChIP 501-mel_SHMITF GSE61965.SMARCA4.501-mel_SHMITF 280 bp overlap
ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 401 bp overlap
ChIP BT-16_Dox GSE71504.SMARCA4.BT-16_Dox 305 bp overlap
SOX13 2 datasets
Motif DE_48h DE_48h-SOX13_MA1120.2 7 bp overlap
Motif DE_60h DE_60h-SOX13_MA1120.2 7 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 571 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 744 bp overlap
SOX2 2 datasets
Motif DE_48h DE_48h-SOX2_MA0143.5 7 bp overlap
Motif DE_60h DE_60h-SOX2_MA0143.5 7 bp overlap
SOX4 2 datasets
Motif DE_48h DE_48h-SOX4_MA0867.3 8 bp overlap
Motif DE_60h DE_60h-SOX4_MA0867.3 8 bp overlap
SOX8 2 datasets
Motif DE_48h DE_48h-SOX8_MA0868.3 7 bp overlap
Motif DE_60h DE_60h-SOX8_MA0868.3 7 bp overlap
SOX9 2 datasets
Motif DE_48h DE_48h-SOX9_MA0077.2 8 bp overlap
Motif DE_60h DE_60h-SOX9_MA0077.2 8 bp overlap
SRY 2 datasets
Motif DE_48h DE_48h-SRY_MA0084.2 7 bp overlap
Motif DE_60h DE_60h-SRY_MA0084.2 7 bp overlap
STAT3 2 datasets
ChIP T-47D_JC4757 GSE126004.STAT3.T-47D_JC4757 215 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 194 bp overlap
Sox17 2 datasets
Motif DE_48h DE_48h-Sox17_MA0078.3 10 bp overlap
Motif DE_60h DE_60h-Sox17_MA0078.3 10 bp overlap
Sox3 2 datasets
Motif DE_48h DE_48h-Sox3_MA0514.3 7 bp overlap
Motif DE_60h DE_60h-Sox3_MA0514.3 7 bp overlap
Sox5 2 datasets
Motif DE_48h DE_48h-Sox5_MA0087.3 8 bp overlap
Motif DE_60h DE_60h-Sox5_MA0087.3 8 bp overlap
Sox6 2 datasets
Motif DE_48h DE_48h-Sox6_MA0515.1 10 bp overlap
Motif DE_60h DE_60h-Sox6_MA0515.1 10 bp overlap
Sox7 2 datasets
Motif DE_48h DE_48h-Sox7_MA2095.1 10 bp overlap
Motif DE_60h DE_60h-Sox7_MA2095.1 10 bp overlap
TCF7 2 datasets
Motif DE_48h DE_48h-TCF7_MA0769.3 7 bp overlap
Motif DE_60h DE_60h-TCF7_MA0769.3 7 bp overlap
TCF7L1 2 datasets
Motif DE_48h DE_48h-TCF7L1_MA1421.1 12 bp overlap
Motif DE_60h DE_60h-TCF7L1_MA1421.1 12 bp overlap
TCF7L2 3 datasets
Motif DE_48h DE_48h-TCF7L2_MA0523.2 9 bp overlap
Motif DE_60h DE_60h-TCF7L2_MA0523.2 9 bp overlap
ChIP PANC-1 ENCSR000EXL.TCF7L2.PANC-1 220 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 344 bp overlap
TRPS1 1 dataset
ChIP T-47D GSE107013.TRPS1.T-47D 114 bp overlap
VENTX 1 dataset
Motif DE_36h DE_36h-VENTX_MA0724.1 9 bp overlap
Yy1 2 datasets
Motif DE_36h DE_36h-Yy1_MA0095.4 8 bp overlap
Motif DE_48h DE_48h-Yy1_MA0095.4 8 bp overlap
ZFP42 1 dataset
Motif DE_36h DE_36h-ZFP42_MA1651.2 13 bp overlap
ZNF140 3 datasets
Motif DE_36h DE_36h-ZNF140_MA1589.2 19 bp overlap
Motif DE_48h DE_48h-ZNF140_MA1589.2 19 bp overlap
Motif DE_60h DE_60h-ZNF140_MA1589.2 19 bp overlap
ZNF214 2 datasets
Motif DE_48h DE_48h-ZNF214_MA1975.2 13 bp overlap
Motif DE_60h DE_60h-ZNF214_MA1975.2 13 bp overlap
ZNF316 1 dataset
ChIP K562 ENCFF838QCD 58 bp overlap
ZNF343 2 datasets
Motif DE_36h DE_36h-ZNF343_MA1711.2 16 bp overlap
Motif DE_60h DE_60h-ZNF343_MA1711.2 16 bp overlap
ZNF418 2 datasets
Motif DE_48h DE_48h-ZNF418_MA1980.1 15 bp overlap
Motif DE_60h DE_60h-ZNF418_MA1980.1 15 bp overlap
ZNF680 1 dataset
Motif DE_36h DE_36h-ZNF680_MA1729.2 11 bp overlap
ZSCAN21 3 datasets
Motif DE_48h DE_48h-ZSCAN21_MA2336.1 7 bp overlap
Motif DE_60h DE_60h-ZSCAN21_MA2336.1 7 bp overlap
Motif DE_72h DE_72h-ZSCAN21_MA2336.1 7 bp overlap
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