chr5 : 51,188,035 51,188,455
420 bp 72 TFs 0 linked genes
This 420 bp open chromatin element has no linked target genes and is bound by 72 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:51,183,035 – 51,193,455
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
72 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP GSE80256.AR.LNCaP 362 bp overlap
ARNTL 2 datasets
ChIP U2OS GSE44236.ARNTL.U2OS 110 bp overlap
ChIP U2OS_DMOG GSE85096.ARNTL.U2OS_DMOG 261 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_SKNFI GSE100148.ATRX.metastatic-neuroblastoma_SKNFI 247 bp overlap
BRD4 7 datasets
ChIP CLB-Ga GSE133453.BRD4.CLB-Ga 243 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 420 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 301 bp overlap
ChIP NCI-H2171 GSE101821.BRD4.NCI-H2171 239 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 268 bp overlap
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 420 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 186 bp overlap
CHD2 2 datasets
ChIP SK-N-SH ENCFF669KMB 261 bp overlap
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 205 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 241 bp overlap
CHD8 1 dataset
ChIP T-47D GSE62428.CHD8.T-47D 160 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 251 bp overlap
DMRTA1 1 dataset
Motif DE_12h DE_12h-DMRTA1_MA1707.2 10 bp overlap
DPF2 2 datasets
ChIP BIN-67_ctrl GSE117734.DPF2.BIN-67_ctrl 300 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.DPF2.BIN-67_lentivirus-SMARCA4-T910M 102 bp overlap
EP300 2 datasets
ChIP SK-N-SH ENCFF829RWA 331 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 420 bp overlap
ESR1 1 dataset
ChIP MCF-7_E2 GSE14664.ESR1.MCF-7_E2 112 bp overlap
FOXA2 2 datasets
ChIP liver_CARN1618 ERP008682.FOXA2.liver_CARN1618 367 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 301 bp overlap
FOXJ3 1 dataset
ChIP SK-N-SH ENCFF124KVL 260 bp overlap
GATA2 2 datasets
ChIP SK-N-SH ENCFF764OZD 215 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 136 bp overlap
GRHL2 1 dataset
ChIP LNCaP GSE80256.GRHL2.LNCaP 158 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 298 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 200 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 363 bp overlap
HDAC2 1 dataset
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 304 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 420 bp overlap
JUN 1 dataset
ChIP MCF-7_Tamoxifen GSE102410.JUN.MCF-7_Tamoxifen 187 bp overlap
KDM1A 2 datasets
ChIP SH-SY5Y_B0 GSE58258.KDM1A.SH-SY5Y_B0 177 bp overlap
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 261 bp overlap
MAX 2 datasets
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 236 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 202 bp overlap
MED1 1 dataset
ChIP NCI-H2171 GSE36354.MED1.NCI-H2171 122 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 260 bp overlap
MXI1 1 dataset
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 131 bp overlap
MYC 2 datasets
ChIP NB69 GSE138295.MYC.NB69 98 bp overlap
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 233 bp overlap
MYCN 2 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 250 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 376 bp overlap
NANOG 7 datasets
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 267 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 393 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 291 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 186 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 420 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 387 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 404 bp overlap
NCOA2 1 dataset
ChIP MCF-7 ERP000901.NCOA2.MCF-7 134 bp overlap
NHLH1 1 dataset
Motif DE_12h DE_12h-NHLH1_MA0048.3 9 bp overlap
Olig2 1 dataset
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
PBX1 1 dataset
Motif DE_12h DE_12h-PBX1_MA0070.2 9 bp overlap
PGR 2 datasets
Motif DE_12h DE_12h-PGR_MA2327.1 9 bp overlap
Motif ES_0h ES_0h-PGR_MA2327.1 9 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 420 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 289 bp overlap
POU5F1 9 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 336 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 420 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 184 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 245 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 129 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 250 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 344 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 224 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR362VCG.POU5F1.neuron_bipolar_doxy_4d 336 bp overlap
PRDM1 1 dataset
ChIP fetal_testis GSE100639.PRDM1.fetal_testis 126 bp overlap
RAD21 2 datasets
ChIP SK-N-SH ENCFF747MAS 251 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 247 bp overlap
RARA 2 datasets
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 274 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 181 bp overlap
RBBP4 1 dataset
ChIP SCMC GSE155861.RBBP4.SCMC 420 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 304 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 280 bp overlap
REST 1 dataset
ChIP neural ENCSR000BTV.REST.neural 120 bp overlap
RNF2 1 dataset
ChIP WA09 GSE105028.RNF2.WA09 241 bp overlap
SMARCA4 5 datasets
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 420 bp overlap
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 259 bp overlap
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 239 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 199 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 304 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 229 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 257 bp overlap
SOX8 1 dataset
ChIP RH4 GSE116344.SOX8.RH4 305 bp overlap
TBX2 1 dataset
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 228 bp overlap
TCF4 1 dataset
ChIP SK-N-SH ENCFF270OWF 125 bp overlap
TFAP2A 1 dataset
Motif ES_0h ES_0h-TFAP2A_MA0003.5 9 bp overlap
TFAP2B 2 datasets
Motif ES_0h ES_0h-TFAP2B_MA0812.2 9 bp overlap
ChIP SK-N-SH ENCFF869XXQ 384 bp overlap
TFAP2C 3 datasets
Motif ES_0h ES_0h-TFAP2C_MA0814.3 9 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 420 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 187 bp overlap
TFAP2E 1 dataset
Motif ES_0h ES_0h-TFAP2E_MA1569.2 9 bp overlap
TOX2 1 dataset
ChIP SK-N-SH ENCFF415OYE 229 bp overlap
TP53 1 dataset
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 204 bp overlap
TSHZ2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 291 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 206 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 206 bp overlap
Tcf12 1 dataset
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
YY1 2 datasets
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 223 bp overlap
ChIP SK-N-SH ENCSR000BLZ.YY1.SK-N-SH 107 bp overlap
ZEB1 1 dataset
ChIP neuron_bipolar_doxy_4d ENCSR418KUS.ZEB1.neuron_bipolar_doxy_4d 145 bp overlap
ZNF140 1 dataset
Motif DE_12h DE_12h-ZNF140_MA1589.2 19 bp overlap
ZNF143 2 datasets
ChIP WA09 GSE105028.ZNF143.WA09 190 bp overlap
ChIP WA09_heat-shock GSE105028.ZNF143.WA09_heat-shock 239 bp overlap
ZNF214 1 dataset
Motif DE_12h DE_12h-ZNF214_MA1975.2 13 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 161 bp overlap
Zfp335 1 dataset
Motif ES_0h ES_0h-Zfp335_MA2002.2 7 bp overlap