chr4 : 139,775,255 – 139,775,459
204 bp 64 TFs 0 linked genes
This 204 bp open chromatin element has no linked target genes and is bound by 64 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:139,770,255 – 139,780,459
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
64 transcription factors
Source
Cell type
AR 27 datasets
ChIP LNCaP GSE110655.AR.LNCaP 204 bp overlap
ChIP LNCaP GSE43720.AR.LNCaP 110 bp overlap
ChIP LNCaP GSE63202.AR.LNCaP 161 bp overlap
ChIP LNCaP-abl_DMSO GSE80238.AR.LNCaP-abl_DMSO 109 bp overlap
ChIP LNCaP-clone-FGC_DHT-ABBV-075 GSE118247.AR.LNCaP-clone-FGC_DHT-ABBV-075 185 bp overlap
ChIP LNCaP-clone-FGC_DHT-ABBV-744 GSE118247.AR.LNCaP-clone-FGC_DHT-ABBV-744 204 bp overlap
ChIP LNCaP-clone-FGC_DHT-DMSO GSE118247.AR.LNCaP-clone-FGC_DHT-DMSO 204 bp overlap
ChIP LNCaP_Bag-1L_WT_DHT GSE89938.AR.LNCaP_Bag-1L_WT_DHT 106 bp overlap
ChIP LNCaP_DHT GSE43720.AR.LNCaP_DHT 204 bp overlap
ChIP LNCaP_FOXA1 ERP003503.AR.LNCaP_FOXA1 195 bp overlap
ChIP LNCaP_G87R_shFOXA1_Ethanol GSE128883.AR.LNCaP_G87R_shFOXA1_Ethanol 104 bp overlap
ChIP LNCaP_GFP_Ethanol GSE128883.AR.LNCaP_GFP_Ethanol 204 bp overlap
ChIP LNCaP_androgen-N_hypoxia-N GSE114732.AR.LNCaP_androgen-N_hypoxia-N 169 bp overlap
ChIP LNCaP_androgen-N_hypoxia-Y GSE114732.AR.LNCaP_androgen-N_hypoxia-Y 149 bp overlap
ChIP LNCaP_r1881 GSE94682.AR.LNCaP_r1881 144 bp overlap
ChIP LNCaP_sgCHD1 GSE117430.AR.LNCaP_sgCHD1 127 bp overlap
ChIP primary-prostate-cancer_P2_DSG GSE114737.AR.primary-prostate-cancer_P2_DSG 66 bp overlap
ChIP prostate-cancer_PDX_141 GSE130408.AR.prostate-cancer_PDX_141 93 bp overlap
ChIP prostate-cancer_PDX_35 GSE130408.AR.prostate-cancer_PDX_35 101 bp overlap
ChIP prostate_1636_T GSE130408.AR.prostate_1636_T 85 bp overlap
ChIP prostate_1730_T GSE130408.AR.prostate_1730_T 85 bp overlap
ChIP prostate_1816_T GSE130408.AR.prostate_1816_T 204 bp overlap
ChIP prostate_2752_T GSE130408.AR.prostate_2752_T 101 bp overlap
ChIP prostate_2815_T GSE130408.AR.prostate_2815_T 99 bp overlap
ChIP prostate_4024_T GSE130408.AR.prostate_4024_T 179 bp overlap
ChIP prostate_P25 GSE130408.AR.prostate_P25 69 bp overlap
ChIP prostate_P7_T GSE130408.AR.prostate_P7_T 67 bp overlap
ASXL3 1 dataset
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 204 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 89 bp overlap
BAF155 2 datasets
ChIP VCaP_shARID1A GSE110655.BAF155.VCaP_shARID1A 101 bp overlap
ChIP VCaP_shERG GSE110655.BAF155.VCaP_shERG 126 bp overlap
BAP1 2 datasets
ChIP NCI-H1963_shASXL3 GSE145028.BAP1.NCI-H1963_shASXL3 166 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BAP1.NCI-H1963_shNONT 204 bp overlap
BCOR 1 dataset
ChIP VCaP_EtOH GSE122572.BCOR.VCaP_EtOH 64 bp overlap
BRD4 9 datasets
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 204 bp overlap
ChIP LNCaP-C4-2_F133V_JQ1 GSE88871.BRD4.LNCaP-C4-2_F133V_JQ1 166 bp overlap
ChIP LNCaP-clone-FGC_DHT-DMSO GSE118247.BRD4.LNCaP-clone-FGC_DHT-DMSO 186 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 204 bp overlap
ChIP NCI-H1963_dBET6 GSE145028.BRD4.NCI-H1963_dBET6 204 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 204 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 204 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 204 bp overlap
ChIP VCaP GSE148358.BRD4.VCaP 204 bp overlap
CDX2 2 datasets
ChIP LS180_125 GSE31939.CDX2.LS180_125 74 bp overlap
ChIP intestinal-cell GSE115314.CDX2.intestinal-cell 111 bp overlap
CREB1 1 dataset
ChIP LNCaP-abl_SHCTR GSE63034.CREB1.LNCaP-abl_SHCTR 150 bp overlap
CTCF 9 datasets
ChIP C4-2B ENCFF821XVN 204 bp overlap
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 111 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 140 bp overlap
ChIP LNCaP_Ctrl GSE125639.CTCF.LNCaP_Ctrl 165 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 195 bp overlap
ChIP VCaP_R1881 GSE84432.CTCF.VCaP_R1881 122 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 155 bp overlap
ChIP leukemia GSE142161.CTCF.leukemia 149 bp overlap
EP300 1 dataset
ChIP hESC GSE17917.EP300.hESC 143 bp overlap
FEZF1 3 datasets
ChIP HEK293 ENCFF528YED 204 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 185 bp overlap
ChIP HEK293 GSE76494.FEZF1.HEK293 149 bp overlap
FOXA1 18 datasets
ChIP LNCaP GSE64656.FOXA1.LNCaP 152 bp overlap
ChIP LNCaP-C4-2B_CST GSE123618.FOXA1.LNCaP-C4-2B_CST 90 bp overlap
ChIP LNCaP-C4-2B_TFS GSE123618.FOXA1.LNCaP-C4-2B_TFS 74 bp overlap
ChIP LNCaP-abl GSE63034.FOXA1.LNCaP-abl 52 bp overlap
ChIP LNCaP_1F5 GSE30623.FOXA1.LNCaP_1F5 81 bp overlap
ChIP LNCaP_G87R_shFOXA1 GSE128883.FOXA1.LNCaP_G87R_shFOXA1 84 bp overlap
ChIP LNCaP_SHFOXA1_R1881 GSE37345.FOXA1.LNCaP_SHFOXA1_R1881 108 bp overlap
ChIP LNCaP_TFS GSE123618.FOXA1.LNCaP_TFS 143 bp overlap
ChIP LNCaP_VEH GSE114266.FOXA1.LNCaP_VEH 116 bp overlap
ChIP VCaP_ETOH24H GSE58428.FOXA1.VCaP_ETOH24H 204 bp overlap
ChIP primary-prostate-cancer_P2_DSG GSE114737.FOXA1.primary-prostate-cancer_P2_DSG 106 bp overlap
ChIP prostate_2078_T GSE130408.FOXA1.prostate_2078_T 109 bp overlap
ChIP prostate_2480 GSE130408.FOXA1.prostate_2480 167 bp overlap
ChIP prostate_2483_T GSE130408.FOXA1.prostate_2483_T 125 bp overlap
ChIP prostate_P13_T GSE130408.FOXA1.prostate_P13_T 65 bp overlap
ChIP prostate_P23_T GSE130408.FOXA1.prostate_P23_T 141 bp overlap
ChIP prostate_P5_T GSE130408.FOXA1.prostate_P5_T 120 bp overlap
ChIP prostate_P7_T GSE130408.FOXA1.prostate_P7_T 91 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 192 bp overlap
ChIP DE DE-FOXA2-2 137 bp overlap
GATA2 3 datasets
ChIP LNCaP GSE38391.GATA2.LNCaP 63 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 63 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 91 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-2 97 bp overlap
GATA6 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 204 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 204 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 204 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000BNR.HDAC2.WA01 154 bp overlap
HNF4A 1 dataset
Motif DE_12h DE_12h-HNF4A_MA1494.2 14 bp overlap
HOXB13 35 datasets
ChIP 22Rv1 GSE96652.HOXB13.22Rv1 97 bp overlap
ChIP LNCaP GSE56288.HOXB13.LNCaP 204 bp overlap
ChIP LNCaP GSE96652.HOXB13.LNCaP 202 bp overlap
ChIP LNCaP_DHT_CTL GSE117304.HOXB13.LNCaP_DHT_CTL 97 bp overlap
ChIP LNCaP_EtOH_CTL GSE117304.HOXB13.LNCaP_EtOH_CTL 128 bp overlap
ChIP prostate-cancer_PDX_141 GSE130408.HOXB13.prostate-cancer_PDX_141 161 bp overlap
ChIP prostate-cancer_PDX_167 GSE130408.HOXB13.prostate-cancer_PDX_167 144 bp overlap
ChIP prostate-cancer_PDX_170-2 GSE130408.HOXB13.prostate-cancer_PDX_170-2 123 bp overlap
ChIP prostate-cancer_PDX_189-4 GSE130408.HOXB13.prostate-cancer_PDX_189-4 101 bp overlap
ChIP prostate-cancer_PDX_70 GSE130408.HOXB13.prostate-cancer_PDX_70 167 bp overlap
ChIP prostate-cancer_PDX_92 GSE130408.HOXB13.prostate-cancer_PDX_92 204 bp overlap
ChIP prostate_2030_T GSE130408.HOXB13.prostate_2030_T 156 bp overlap
ChIP prostate_2078 GSE130408.HOXB13.prostate_2078 179 bp overlap
ChIP prostate_2078_T GSE130408.HOXB13.prostate_2078_T 204 bp overlap
ChIP prostate_2483 GSE130408.HOXB13.prostate_2483 156 bp overlap
ChIP prostate_2483_T GSE130408.HOXB13.prostate_2483_T 181 bp overlap
ChIP prostate_2484 GSE130408.HOXB13.prostate_2484 132 bp overlap
ChIP prostate_2484_T GSE130408.HOXB13.prostate_2484_T 128 bp overlap
ChIP prostate_P1 GSE130408.HOXB13.prostate_P1 66 bp overlap
ChIP prostate_P13 GSE130408.HOXB13.prostate_P13 144 bp overlap
ChIP prostate_P13_T GSE130408.HOXB13.prostate_P13_T 204 bp overlap
ChIP prostate_P19 GSE130408.HOXB13.prostate_P19 169 bp overlap
ChIP prostate_P19_T GSE130408.HOXB13.prostate_P19_T 150 bp overlap
ChIP prostate_P1_T GSE130408.HOXB13.prostate_P1_T 204 bp overlap
ChIP prostate_P23 GSE130408.HOXB13.prostate_P23 87 bp overlap
ChIP prostate_P23_T GSE130408.HOXB13.prostate_P23_T 204 bp overlap
ChIP prostate_P25 GSE130408.HOXB13.prostate_P25 204 bp overlap
ChIP prostate_P27 GSE130408.HOXB13.prostate_P27 204 bp overlap
ChIP prostate_P27_T GSE130408.HOXB13.prostate_P27_T 150 bp overlap
ChIP prostate_P29 GSE130408.HOXB13.prostate_P29 204 bp overlap
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 204 bp overlap
ChIP prostate_P5 GSE130408.HOXB13.prostate_P5 59 bp overlap
ChIP prostate_P5_T GSE130408.HOXB13.prostate_P5_T 186 bp overlap
ChIP prostate_P7 GSE130408.HOXB13.prostate_P7 85 bp overlap
ChIP prostate_P7_T GSE130408.HOXB13.prostate_P7_T 190 bp overlap
IKZF3 2 datasets
ChIP HEK293 ENCFF518OXG 154 bp overlap
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 83 bp overlap
JUN 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 64 bp overlap
MED1 1 dataset
ChIP VCaP GSE148358.MED1.VCaP 119 bp overlap
MYCN 5 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 136 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 174 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 112 bp overlap
ChIP LNCaP_DHT GSE117304.MYCN.LNCaP_DHT 204 bp overlap
ChIP LNCaP_EtOH GSE117304.MYCN.LNCaP_EtOH 204 bp overlap
NANOG 4 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 204 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 120 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 204 bp overlap
ChIP hESC GSE18292.NANOG.hESC 137 bp overlap
NIPBL 1 dataset
ChIP GP5D GSE51234.NIPBL.GP5D 122 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 82 bp overlap
NOTCH3 1 dataset
ChIP TALL-1_GSI GSE104261.NOTCH3.TALL-1_GSI 152 bp overlap
NUTM1 1 dataset
ChIP NMC24335 GSE96775.NUTM1.NMC24335 69 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 95 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 165 bp overlap
POLR2A 1 dataset
ChIP prostate gland ENCFF881OMH 73 bp overlap
PRDM6 3 datasets
ChIP HEK293 ENCFF283AJL 66 bp overlap
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 115 bp overlap
ChIP HEK293 GSE76494.PRDM6.HEK293 55 bp overlap
RAD21 4 datasets
ChIP GP5D GSE51234.RAD21.GP5D 204 bp overlap
ChIP H1 ENCFF698EWO 204 bp overlap
ChIP HeLa-S3_CTCF-s-OE GSE108869.RAD21.HeLa-S3_CTCF-s-OE 202 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 93 bp overlap
RARA 1 dataset
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 172 bp overlap
RELA 2 datasets
ChIP LNCaP_SICTR_TNFA GSE83860.RELA.LNCaP_SICTR_TNFA 73 bp overlap
ChIP LNCaP_SIFOXA1_TNFA GSE83860.RELA.LNCaP_SIFOXA1_TNFA 90 bp overlap
SIX2 2 datasets
ChIP HEK GSE73865.SIX2.HEK 73 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 53 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 204 bp overlap
SMAD2_3 1 dataset
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 183 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE36578.SMAD3.BG03 94 bp overlap
SMARCA4 3 datasets
ChIP MCF-7 GSE140185.SMARCA4.MCF-7 50 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 126 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 195 bp overlap
SMARCC1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 204 bp overlap
SMC3 1 dataset
ChIP GP5D GSE51234.SMC3.GP5D 97 bp overlap
SOX10 1 dataset
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
SOX2 2 datasets
ChIP hESC GSE18292.SOX2.hESC 75 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 136 bp overlap
SP7 1 dataset
ChIP HEK293 ENCSR468IJT.SP7.HEK293 148 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 115 bp overlap
TAF7 2 datasets
ChIP H1 ENCFF061XZZ 74 bp overlap
ChIP WA01 ENCSR000BLU.TAF7.WA01 50 bp overlap
TBX2 1 dataset
ChIP Kelly GSE94822.TBX2.Kelly 55 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 204 bp overlap
TLE3 2 datasets
ChIP LNCaP GSE94682.TLE3.LNCaP 105 bp overlap
ChIP LNCaP_r1881 GSE94682.TLE3.LNCaP_r1881 92 bp overlap
TSHZ2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 56 bp overlap
XBP1 1 dataset
ChIP LNCaP_Tg GSE121880.XBP1.LNCaP_Tg 124 bp overlap
YY1AP1 1 dataset
ChIP HEK293_siCtrl GSE130135.YY1AP1.HEK293_siCtrl 97 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 204 bp overlap
ZKSCAN5 1 dataset
ChIP HEK293T GSE78099.ZKSCAN5.HEK293T 89 bp overlap
ZNF341 3 datasets
ChIP HEK293 ENCFF944VMC 204 bp overlap
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 204 bp overlap
ChIP HEK293 GSE76494.ZNF341.HEK293 204 bp overlap
ZNF394 1 dataset
ChIP HEK293 ENCSR125DNC.ZNF394.HEK293 81 bp overlap
ZNF425 1 dataset
ChIP HEK293T GSE78099.ZNF425.HEK293T 204 bp overlap
ZNF561 1 dataset
ChIP HEK293 ENCSR125ULS.ZNF561.HEK293 134 bp overlap
ZNF652 1 dataset
Motif DE_12h DE_12h-ZNF652_MA1657.2 9 bp overlap
ZNF780A 1 dataset
ChIP HEK293T GSE78099.ZNF780A.HEK293T 123 bp overlap
ZSCAN5C 2 datasets
ChIP HEK293 ENCFF343DTU 129 bp overlap
ChIP HEK293 ENCSR731AGO.ZSCAN5C.HEK293 137 bp overlap
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