chr4 : 139,568,623 139,568,909
286 bp 58 TFs 1 linked gene
This 286 bp open chromatin element is linked to ENSG00000286896 and is bound by 58 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
ENSG00000286896 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:139,563,623 – 139,573,909
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
58 transcription factors
Source
Cell type
BRD4 2 datasets
ChIP K-562_iBET-BD1-IFNG GSE138084.BRD4.K-562_iBET-BD1-IFNG 193 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 286 bp overlap
BRF1 1 dataset
ChIP H9 GSE94418.BRF1.H9 136 bp overlap
CBX2 1 dataset
ChIP K-562 ENCSR000ATU.CBX2.K-562 161 bp overlap
CBX8 1 dataset
ChIP K-562 ENCSR000ATW.CBX8.K-562 119 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 286 bp overlap
CREBBP 1 dataset
ChIP keratinocyte GSE140991.CREBBP.keratinocyte 189 bp overlap
CTCF 1 dataset
ChIP dorsolateral prefrontal cortex ENCFF812HQJ 272 bp overlap
ERG 1 dataset
ChIP SKNO-1 GSE23730.ERG.SKNO-1 230 bp overlap
ESR1 1 dataset
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 244 bp overlap
EZH2 1 dataset
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 286 bp overlap
GATA2 1 dataset
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 258 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 204 bp overlap
HDAC2 2 datasets
ChIP RH4_DMSO-6H GSE116344.HDAC2.RH4_DMSO-6H 250 bp overlap
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 286 bp overlap
IRF2 1 dataset
ChIP keratinocyte_DOX GSE135677.IRF2.keratinocyte_DOX 215 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 158 bp overlap
JUN 1 dataset
ChIP MCF10A-Er-Src_EtOH GSE115597.JUN.MCF10A-Er-Src_EtOH 144 bp overlap
KDM4B 1 dataset
ChIP K-562 ENCSR642VZY.KDM4B.K-562 147 bp overlap
KLF5 1 dataset
ChIP HEK293_E419K GSE88976.KLF5.HEK293_E419K 218 bp overlap
MAX 1 dataset
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 199 bp overlap
MECOM 1 dataset
ChIP SKH1 GSE102697.MECOM.SKH1 163 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 286 bp overlap
MYC 1 dataset
ChIP MCF-10A ENCSR000DOS.MYC.MCF-10A 214 bp overlap
MYOD1 8 datasets
ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 286 bp overlap
ChIP RD GSE137168.MYOD1.RD 254 bp overlap
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 270 bp overlap
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 286 bp overlap
ChIP RH4 GSE83726.MYOD1.RH4 236 bp overlap
ChIP SMS-CTR GSE137168.MYOD1.SMS-CTR 275 bp overlap
ChIP myoblast GSE50413.MYOD1.myoblast 215 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 220 bp overlap
MYOG 4 datasets
ChIP RH30_DMSO GSE85169.MYOG.RH30_DMSO 253 bp overlap
ChIP RH4 GSE83726.MYOG.RH4 253 bp overlap
ChIP RH4_DMSO-6H GSE116344.MYOG.RH4_DMSO-6H 284 bp overlap
ChIP RH4_Entinostat-6H GSE116344.MYOG.RH4_Entinostat-6H 167 bp overlap
NEUROD1 3 datasets
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 246 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 129 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 156 bp overlap
NEUROG2 6 datasets
ChIP MRC-5_NFD_02DPT GSE75910.NEUROG2.MRC-5_NFD_02DPT 280 bp overlap
ChIP MRC-5_NFD_05DPT GSE75910.NEUROG2.MRC-5_NFD_05DPT 286 bp overlap
ChIP MRC-5_NFD_1DPT GSE75910.NEUROG2.MRC-5_NFD_1DPT 286 bp overlap
ChIP MRC-5_N_02DPT GSE75910.NEUROG2.MRC-5_N_02DPT 264 bp overlap
ChIP MRC-5_N_05DPT GSE75910.NEUROG2.MRC-5_N_05DPT 272 bp overlap
ChIP MRC-5_N_1DPT GSE75910.NEUROG2.MRC-5_N_1DPT 254 bp overlap
NOTCH3 1 dataset
ChIP TALL-1_DMSO GSE104261.NOTCH3.TALL-1_DMSO 193 bp overlap
NRF1 1 dataset
ChIP HMEC-1 GSE67867.NRF1.HMEC-1 230 bp overlap
OLIG2 3 datasets
ChIP brain-prefrontal-cortex_2016018 GSE129039.OLIG2.brain-prefrontal-cortex_2016018 225 bp overlap
ChIP brain-prefrontal-cortex_2017014 GSE129039.OLIG2.brain-prefrontal-cortex_2017014 197 bp overlap
ChIP brain-prefrontal-cortex_2018006 GSE129039.OLIG2.brain-prefrontal-cortex_2018006 286 bp overlap
PHF19 1 dataset
ChIP DU145_CTR GSE135623.PHF19.DU145_CTR 274 bp overlap
POU5F1 3 datasets
ChIP BG03 GSE21614.POU5F1.BG03 197 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 187 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR362VCG.POU5F1.neuron_bipolar_doxy_4d 187 bp overlap
RAD21 1 dataset
ChIP RH4 GSE83726.RAD21.RH4 222 bp overlap
RBBP4 2 datasets
ChIP RH5 GSE155861.RBBP4.RH5 216 bp overlap
ChIP SCMC GSE155861.RBBP4.SCMC 273 bp overlap
RCOR1 1 dataset
ChIP keratinocyte_diff GSE57702.RCOR1.keratinocyte_diff 192 bp overlap
RELA 3 datasets
ChIP BJAB GSE117250.RELA.BJAB 182 bp overlap
ChIP BJAB_1h-activation GSE117250.RELA.BJAB_1h-activation 144 bp overlap
ChIP BJAB_4h-activation GSE117250.RELA.BJAB_4h-activation 158 bp overlap
RNF2 1 dataset
ChIP K-562 ENCSR820GND.RNF2.K-562 286 bp overlap
RUNX1 1 dataset
ChIP CD34_ADULT GSE70660.RUNX1.CD34_ADULT 170 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000EBO.SIN3A.WA01 161 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 129 bp overlap
SOX4 1 dataset
ChIP MRC-5_1DPT GSE75910.SOX4.MRC-5_1DPT 266 bp overlap
SOX8 1 dataset
ChIP RH4 GSE116344.SOX8.RH4 279 bp overlap
TBL1X 1 dataset
ChIP HEK293T GSE35197.TBL1X.HEK293T 189 bp overlap
TCF4 1 dataset
ChIP GEN2-2 GSE76147.TCF4.GEN2-2 185 bp overlap
TEAD1 1 dataset
ChIP keratinocyte GSE138727.TEAD1.keratinocyte 286 bp overlap
TEAD4 3 datasets
ChIP BJ_fibroblast_CD13-pos GSE114367.TEAD4.BJ_fibroblast_CD13-pos 214 bp overlap
ChIP H1 ENCFF778PAX 245 bp overlap
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 228 bp overlap
TP53 1 dataset
ChIP SaOS-2 GSE51268.TP53.SaOS-2 215 bp overlap
TP63 18 datasets
ChIP BxPC-3 GSE115461.TP63.BxPC-3 286 bp overlap
ChIP HaCaT_LacZ_TGFB GSE60814.TP63.HaCaT_LacZ_TGFB 223 bp overlap
ChIP HaCaT_caRAS_TGFB GSE60814.TP63.HaCaT_caRAS_TGFB 200 bp overlap
ChIP HaCaT_dnRAS_TGFB GSE60814.TP63.HaCaT_dnRAS_TGFB 177 bp overlap
ChIP MCF-10A_DCIS GSE72009.TP63.MCF-10A_DCIS 211 bp overlap
ChIP MCF-10A_Nutlin3A GSE111009.TP63.MCF-10A_Nutlin3A 286 bp overlap
ChIP SUIT-2 GSE115461.TP63.SUIT-2 286 bp overlap
ChIP TT GSE46837.TP63.TT 153 bp overlap
ChIP keratinocyte GSE56674.TP63.keratinocyte 275 bp overlap
ChIP keratinocyte GSE33571.TP63.keratinocyte 267 bp overlap
ChIP keratinocyte_CISP GSE56674.TP63.keratinocyte_CISP 283 bp overlap
ChIP keratinocyte_D0 GSE59824.TP63.keratinocyte_D0 286 bp overlap
ChIP keratinocyte_D2 GSE59824.TP63.keratinocyte_D2 286 bp overlap
ChIP keratinocyte_D4 GSE59824.TP63.keratinocyte_D4 286 bp overlap
ChIP keratinocyte_D7 GSE59824.TP63.keratinocyte_D7 286 bp overlap
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 276 bp overlap
ChIP keratinocyte_epidermal GSE67382.TP63.keratinocyte_epidermal 286 bp overlap
ChIP keratinocyte_epidermal_KDPAF GSE67382.TP63.keratinocyte_epidermal_KDPAF 272 bp overlap
TP73_TA 1 dataset
ChIP SaOS-2 GSE15780.TP73_TA.SaOS-2 195 bp overlap
YY1 1 dataset
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 202 bp overlap
YY1AP1 1 dataset
ChIP MCF-10A_ctrl GSE115787.YY1AP1.MCF-10A_ctrl 152 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 275 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 211 bp overlap
ZEB1 1 dataset
ChIP neuron_bipolar_doxy_4d ENCSR418KUS.ZEB1.neuron_bipolar_doxy_4d 172 bp overlap
ZNF532 1 dataset
ChIP NMC24335 GSE96775.ZNF532.NMC24335 282 bp overlap
ZNF600 1 dataset
ChIP HEK293 ENCFF785JSX 252 bp overlap
ZNF711 1 dataset
ChIP HEK293T GSE145160.ZNF711.HEK293T 282 bp overlap