chr4 : 137,536,950 – 137,537,542
592 bp 66 TFs 1 linked gene
This 592 bp open chromatin element is linked to PCDH18 and is bound by 66 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
PCDH18 4.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:137,531,950 – 137,542,542
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
66 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 573 bp overlap
BRD4 1 dataset
ChIP SUM159PT_100nMtrametinib_24h GSE87418.BRD4.SUM159PT_100nMtrametinib_24h 228 bp overlap
CEBPA 1 dataset
ChIP SKH1_RUNX1-EVI1_KD GSE87283.CEBPA.SKH1_RUNX1-EVI1_KD 109 bp overlap
CHD7 3 datasets
ChIP H1 ENCFF126NLU 587 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 568 bp overlap
ChIP hiPSC_derived_lt-NES_AF22 GSE108506.CHD7.hiPSC_derived_lt-NES_AF22 284 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 212 bp overlap
CTCF 10 datasets
ChIP GM12869 ENCSR000DRJ.CTCF.GM12869 123 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 246 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 164 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 233 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 418 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 286 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 301 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 280 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.CTCF.HeLa-Kyoto_PDS5-depleted 154 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 133 bp overlap
ELL2 1 dataset
ChIP HeLa GSE40632.ELL2.HeLa 182 bp overlap
ETS1 1 dataset
ChIP hESC ENCSR534VHI.ETS1.hESC 134 bp overlap
ETV1 1 dataset
ChIP GIST GSE22441.ETV1.GIST 111 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 437 bp overlap
EWSR1-FLI1 1 dataset
Motif DE_12h DE_12h-EWSR1-FLI1_MA0149.1 18 bp overlap
FOXO1-PAX3 1 dataset
ChIP RH4_DMSO-6H GSE116344.FOXO1-PAX3.RH4_DMSO-6H 250 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 130 bp overlap
Foxq1 1 dataset
Motif DE_12h DE_12h-Foxq1_MA0040.2 10 bp overlap
GZF1 1 dataset
ChIP HepG2 ENCFF060TLH 400 bp overlap
HAND2 1 dataset
Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap
HDAC2 2 datasets
ChIP H1 ENCFF939VKA 237 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 230 bp overlap
Hand1 1 dataset
Motif DE_12h DE_12h-Hand1_MA2123.1 9 bp overlap
Hand1::Tcf3 1 dataset
Motif DE_12h DE_12h-Hand1Tcf3_MA0092.2 9 bp overlap
Hnf1A 1 dataset
Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap
JUN 1 dataset
ChIP HUES-8 GSE109524.JUN.HUES-8 288 bp overlap
Lef1 1 dataset
Motif DE_12h DE_12h-Lef1_MA0768.3 8 bp overlap
MAFK 2 datasets
ChIP H1 ENCFF854XWE 285 bp overlap
ChIP WA01 ENCSR000EBS.MAFK.WA01 262 bp overlap
MED1 7 datasets
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 408 bp overlap
ChIP hMSC-TERT4_4h GSE104537.MED1.hMSC-TERT4_4h 185 bp overlap
ChIP hMSC-TERT4_adipocyte-4H GSE113253.MED1.hMSC-TERT4_adipocyte-4H 405 bp overlap
ChIP hMSC-TERT4_osteoblast-4H GSE113253.MED1.hMSC-TERT4_osteoblast-4H 294 bp overlap
ChIP hMSC-TERT4_osteoblast-D1 GSE113253.MED1.hMSC-TERT4_osteoblast-D1 262 bp overlap
ChIP hMSC-TERT4_undifferentiated GSE113253.MED1.hMSC-TERT4_undifferentiated 218 bp overlap
ChIP hMSC-TERT4_undifferentiated GSE113253.MED1.hMSC-TERT4_undifferentiated 110 bp overlap
MYOD1 1 dataset
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 151 bp overlap
NANOG 8 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 248 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 531 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 424 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 378 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 452 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 453 bp overlap
ChIP hESC GSE20650.NANOG.hESC 209 bp overlap
NCOA2 1 dataset
ChIP MCF-7_E2 ERP000901.NCOA2.MCF-7_E2 52 bp overlap
ONECUT2 1 dataset
ChIP PC-3_normoxia GSE106305.ONECUT2.PC-3_normoxia 267 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 245 bp overlap
POU3F2 1 dataset
ChIP hiPSC_SGC0946 GSE149017.POU3F2.hiPSC_SGC0946 188 bp overlap
POU5F1 8 datasets
ChIP GM23338 ENCFF333SNB 309 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 592 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 396 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 248 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 306 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 425 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 389 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 383 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 243 bp overlap
RAD21 4 datasets
ChIP HAP1 GSE152721.RAD21.HAP1 434 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 343 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 498 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 411 bp overlap
RELA 1 dataset
ChIP Detroit-562_Poly-I GSE91018.RELA.Detroit-562_Poly-I 387 bp overlap
REST 1 dataset
ChIP hippocampus GSE144226.REST.hippocampus 241 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 507 bp overlap
SMAD2 1 dataset
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 259 bp overlap
SMARCA4 3 datasets
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 243 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 356 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 457 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 252 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 133 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 249 bp overlap
SMC3 3 datasets
ChIP HeLa GSE126990.SMC3.HeLa 210 bp overlap
ChIP HeLa-Kyoto GSE102884.SMC3.HeLa-Kyoto 210 bp overlap
ChIP HeLa-Kyoto GSE138405.SMC3.HeLa-Kyoto 210 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_T48 GSE137168.SNAI2.SMS-CTR_T48 170 bp overlap
SOX12 1 dataset
Motif DE_12h DE_12h-SOX12_MA1561.2 10 bp overlap
SOX14 1 dataset
Motif DE_12h DE_12h-SOX14_MA1562.2 9 bp overlap
SOX18 1 dataset
Motif DE_12h DE_12h-SOX18_MA1563.2 8 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 434 bp overlap
SOX8 1 dataset
Motif DE_12h DE_12h-SOX8_MA0868.3 7 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 386 bp overlap
SRF 1 dataset
ChIP MCF-7 ENCSR000BVA.SRF.MCF-7 184 bp overlap
SRY 1 dataset
Motif DE_12h DE_12h-SRY_MA0084.2 7 bp overlap
STAG1 2 datasets
ChIP HeLa GSE126990.STAG1.HeLa 184 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 184 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 265 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 224 bp overlap
TCF7L2 2 datasets
Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap
ChIP PANC-1 ENCSR000EXL.TCF7L2.PANC-1 252 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 405 bp overlap
TEAD4 3 datasets
ChIP ESC S26-ESC-d0-TEAD4-exp1 435 bp overlap
ChIP T-47D_Veh GSE125594.TEAD4.T-47D_Veh 355 bp overlap
ChIP hESC GSE99202.TEAD4.hESC 208 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 488 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 302 bp overlap
TWIST1 1 dataset
Motif DE_12h DE_12h-TWIST1_MA1123.3 8 bp overlap
USF1 1 dataset
ChIP H1 ENCFF090WVU 241 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 285 bp overlap
YY1AP1 2 datasets
ChIP T-47D_E2 GSE125594.YY1AP1.T-47D_E2 297 bp overlap
ChIP T-47D_Veh GSE125594.YY1AP1.T-47D_Veh 339 bp overlap
ZNF143 1 dataset
ChIP K-562 GSE39263.ZNF143.K-562 179 bp overlap
ZNF157 1 dataset
Motif DE_12h DE_12h-ZNF157_MA2331.1 21 bp overlap
ZNF189 1 dataset
Motif DE_12h DE_12h-ZNF189_MA1725.2 9 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 167 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 129 bp overlap
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