chr4 : 99,642,694 99,644,217
1,523 bp 64 TFs 0 linked genes
This 1.5 kb open chromatin element has no linked target genes and is bound by 64 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:99,637,694 – 99,649,217
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
64 transcription factors
Source
Cell type
AR 3 datasets
ChIP LNCaP_M253K_shFOXA1_Ethanol GSE128883.AR.LNCaP_M253K_shFOXA1_Ethanol 186 bp overlap
ChIP MCF-7 GSE48930.AR.MCF-7 174 bp overlap
ChIP prostate_P1_T GSE130408.AR.prostate_P1_T 143 bp overlap
ATF3 2 datasets
ChIP liver ENCFF375GID 336 bp overlap
ChIP liver ENCSR480LIS.ATF3.liver 351 bp overlap
BRD4 2 datasets
ChIP SUM159PT_100nMtrametinib_24h GSE87418.BRD4.SUM159PT_100nMtrametinib_24h 269 bp overlap
ChIP SUM159PT_scramble GSE131097.BRD4.SUM159PT_scramble 247 bp overlap
CRY2 1 dataset
ChIP U2OS GSE130602.CRY2.U2OS 267 bp overlap
CTCF 5 datasets
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 308 bp overlap
ChIP body of pancreas ENCFF269EDN 428 bp overlap
ChIP erythroid GSE67783.CTCF.erythroid 163 bp overlap
ChIP pancreas_body ENCSR265PFQ.CTCF.pancreas_body 235 bp overlap
ChIP pancreas_body ENCSR484DDO.CTCF.pancreas_body 196 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 175 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF031ISE 311 bp overlap
ChIP BLaER1 ENCFF335XTP 341 bp overlap
EBF1 1 dataset
ChIP ASC GSE54889.EBF1.ASC 351 bp overlap
EGR1 2 datasets
ChIP liver ENCFF130MBW 401 bp overlap
ChIP liver ENCSR736BUG.EGR1.liver 208 bp overlap
EP300 2 datasets
ChIP sigmoid colon ENCFF953ZIP 261 bp overlap
ChIP tibial nerve ENCFF346AYA 127 bp overlap
ESR1 2 datasets
ChIP MDA-MB-134-VI_ESTROGEN GSE51022.ESR1.MDA-MB-134-VI_ESTROGEN 300 bp overlap
ChIP primary-endometrium-cancer_E1_DSG GSE114737.ESR1.primary-endometrium-cancer_E1_DSG 103 bp overlap
EZH2 4 datasets
ChIP A673 ENCFF790MVL 340 bp overlap
ChIP A673 ENCFF790MVL 137 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 250 bp overlap
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 124 bp overlap
FOXA1 4 datasets
ChIP 22Rv1_CST_Crispr-36 GSE123618.FOXA1.22Rv1_CST_Crispr-36 209 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 625 bp overlap
ChIP liver ERP002306.FOXA1.liver 328 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 217 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 255 bp overlap
ChIP DE DE-FOXA2-2 225 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 197 bp overlap
GATA2 1 dataset
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 310 bp overlap
GATA4 6 datasets
ChIP DE DE-GATA4-2 175 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
ChIP foregut GSE117136.GATA4.foregut 316 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 489 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 154 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 178 bp overlap
GATA5 1 dataset
Motif DE_60h DE_60h-GATA5_MA0766.3 8 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-1 243 bp overlap
ChIP DE DE-GATA6-2 233 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 284 bp overlap
ChIP foregut GSE117136.GATA6.foregut 411 bp overlap
ChIP foregut GSE117136.GATA6.foregut 248 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 286 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 474 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 241 bp overlap
HDAC2 2 datasets
ChIP H1 ENCFF353UJQ 645 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 144 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 193 bp overlap
HIF1A 1 dataset
ChIP U2OS_DMOG GSE85096.HIF1A.U2OS_DMOG 187 bp overlap
HLF 2 datasets
ChIP Hep-G2 ENCSR528PSI.HLF.Hep-G2 124 bp overlap
ChIP HepG2 ENCFF854JLR 245 bp overlap
HMBOX1 2 datasets
ChIP K-562 ENCSR757IIU.HMBOX1.K-562 267 bp overlap
ChIP K562 ENCFF317JJX 521 bp overlap
HNF1A 1 dataset
ChIP HEE_5 GSE76376.HNF1A.HEE_5 148 bp overlap
HNF1B 2 datasets
ChIP PDAC GSE64557.HNF1B.PDAC 421 bp overlap
ChIP foregut GSE117136.HNF1B.foregut 288 bp overlap
HNF4A 2 datasets
ChIP liver ENCFF354NRH 273 bp overlap
ChIP liver ERP002306.HNF4A.liver 374 bp overlap
JUND 2 datasets
ChIP liver ENCFF007WWT 355 bp overlap
ChIP liver ENCSR837GTK.JUND.liver 340 bp overlap
KDM1A 4 datasets
ChIP H1 ENCFF696SGD 505 bp overlap
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 531 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 499 bp overlap
ChIP pancreatic-progenitor_PP2-KDM1A-inh GSE104840.KDM1A.pancreatic-progenitor_PP2-KDM1A-inh 289 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 134 bp overlap
MED1 10 datasets
ChIP SGBS GSE64233.MED1.SGBS 358 bp overlap
ChIP SGBS GSE64233.MED1.SGBS 258 bp overlap
ChIP SGBS_TNF GSE64233.MED1.SGBS_TNF 356 bp overlap
ChIP adipocyte GSE140782.MED1.adipocyte 212 bp overlap
ChIP hMSC-TERT4_D1 GSE104537.MED1.hMSC-TERT4_D1 228 bp overlap
ChIP hMSC-TERT4_D14 GSE104537.MED1.hMSC-TERT4_D14 324 bp overlap
ChIP hMSC-TERT4_D7 GSE104537.MED1.hMSC-TERT4_D7 397 bp overlap
ChIP hMSC-TERT4_adipocyte-D14 GSE113253.MED1.hMSC-TERT4_adipocyte-D14 504 bp overlap
ChIP hMSC-TERT4_adipocyte-D3 GSE113253.MED1.hMSC-TERT4_adipocyte-D3 437 bp overlap
ChIP hMSC-TERT4_adipocyte-D7 GSE113253.MED1.hMSC-TERT4_adipocyte-D7 339 bp overlap
MITF 1 dataset
ChIP melanocyte_CTR GSE50681.MITF.melanocyte_CTR 205 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 180 bp overlap
MYOD1 1 dataset
ChIP RH4 GSE83726.MYOD1.RH4 370 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 250 bp overlap
NCOA3 1 dataset
ChIP MCF-7_E2 ERP000901.NCOA3.MCF-7_E2 223 bp overlap
NEUROG2 2 datasets
ChIP MRC-5_NFD_02DPT GSE75910.NEUROG2.MRC-5_NFD_02DPT 271 bp overlap
ChIP MRC-5_NFD_1DPT GSE75910.NEUROG2.MRC-5_NFD_1DPT 178 bp overlap
ONECUT1 3 datasets
ChIP H9 ERP004206.ONECUT1.H9 221 bp overlap
ChIP liver ERP002306.ONECUT1.liver 143 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 216 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 259 bp overlap
POLR2A 4 datasets
ChIP adrenal gland ENCFF843OBJ 211 bp overlap
ChIP esophagus muscularis mucosa ENCFF759BBR 391 bp overlap
ChIP spleen ENCFF044PYR 437 bp overlap
ChIP spleen ENCFF446ZGT 264 bp overlap
POU5F1 1 dataset
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 259 bp overlap
PPARG 3 datasets
ChIP ASC GSE21366.PPARG.ASC 411 bp overlap
ChIP HUVEC-C_DMSO_HYPO GSE50144.PPARG.HUVEC-C_DMSO_HYPO 147 bp overlap
ChIP SGBS GSE41629.PPARG.SGBS 299 bp overlap
RBM25 1 dataset
ChIP K-562 ENCSR791OZM.RBM25.K-562 170 bp overlap
RCOR1 1 dataset
ChIP keratinocyte_diff GSE57702.RCOR1.keratinocyte_diff 336 bp overlap
RELA 1 dataset
ChIP SGBS_TNF GSE64233.RELA.SGBS_TNF 439 bp overlap
REST 1 dataset
ChIP liver ENCSR867WPH.REST.liver 154 bp overlap
RNF2 1 dataset
ChIP K-562 ENCSR820GND.RNF2.K-562 394 bp overlap
RXRA 2 datasets
ChIP liver ENCFF077DAP 434 bp overlap
ChIP liver ENCFF807CIA 269 bp overlap
SIX2 3 datasets
ChIP HEK GSE73865.SIX2.HEK 283 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 173 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 291 bp overlap
SP1 1 dataset
ChIP liver ENCFF597LFJ 244 bp overlap
SUZ12 1 dataset
ChIP LNCaP-abl GSE39459.SUZ12.LNCaP-abl 426 bp overlap
TCF7L1 1 dataset
Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap
THAP1 2 datasets
Motif DE_12h DE_12h-THAP1_MA0597.3 8 bp overlap
ChIP K-562 ENCSR000BNN.THAP1.K-562 100 bp overlap
YY1 1 dataset
ChIP liver ENCSR994YLZ.YY1.liver 162 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 215 bp overlap
ZFP57 1 dataset
ChIP hESC GSE115387.ZFP57.hESC 439 bp overlap
ZMYM3 3 datasets
ChIP K-562 ENCSR102KIN.ZMYM3.K-562 197 bp overlap
ChIP K-562_Ab_JH39-2-2F10 GSE97661.ZMYM3.K-562_Ab_JH39-2-2F10 219 bp overlap
ChIP K562 ENCFF361LXT 381 bp overlap
ZNF652 2 datasets
ChIP Hep-G2 ENCSR502GAX.ZNF652.Hep-G2 219 bp overlap
ChIP HepG2 ENCFF331VPZ 381 bp overlap
ZNF680 1 dataset
Motif DE_12h DE_12h-ZNF680_MA1729.2 11 bp overlap
ZNF865 1 dataset
ChIP HepG2 ENCFF472KAQ 437 bp overlap
ZSCAN4 2 datasets
ChIP HEK293 ENCFF381BKT 451 bp overlap
ChIP HEK293 ENCSR211GNP.ZSCAN4.HEK293 364 bp overlap