chr1 : 77,265,094 – 77,265,647

553 bp 90 TFs 0 linked genes

This 553 bp open chromatin element has no linked target genes and is bound by 90 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

90 transcription factors

AR 1 dataset

ChIP LNCaP GSE80256.AR.LNCaP 231 bp overlap

ASCL1 1 dataset

Motif DE_60h DE_60h-ASCL1_MA1631.2 9 bp overlap

Arid3a 1 dataset

Motif DE_60h DE_60h-Arid3a_MA0151.1 6 bp overlap

BHLHE22 2 datasets

Motif DE_48h DE_48h-BHLHE22_MA1635.2 6 bp overlap

Motif DE_60h DE_60h-BHLHE22_MA1635.2 6 bp overlap

BRD4 1 dataset

ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 429 bp overlap

CHD7 1 dataset

ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 272 bp overlap

CTBP2 1 dataset

ChIP WA01 ENCSR000EUO.CTBP2.WA01 219 bp overlap

Cebpa 3 datasets

ChIP BLaER1 ENCFF262VBH 251 bp overlap

ChIP BLaER1 ENCFF364PUR 326 bp overlap

ChIP BLaER1 ENCFF680YXW 202 bp overlap

ELF1 1 dataset

Motif DE_60h DE_60h-ELF1_MA0473.4 9 bp overlap

ELF3 1 dataset

Motif DE_60h DE_60h-ELF3_MA0640.3 9 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 399 bp overlap

ERF::NHLH1 1 dataset

Motif DE_60h DE_60h-ERFNHLH1_MA1938.2 16 bp overlap

ESRRB 1 dataset

Motif DE_60h DE_60h-ESRRB_MA0141.4 10 bp overlap

Esrrg 1 dataset

Motif DE_60h DE_60h-Esrrg_MA0643.2 9 bp overlap

FEZF2 1 dataset

Motif DE_60h DE_60h-FEZF2_MA2341.1 8 bp overlap

FIGLA 1 dataset

Motif DE_60h DE_60h-FIGLA_MA0820.2 6 bp overlap

FOXA1 2 datasets

ChIP LNCaP GSE64656.FOXA1.LNCaP 86 bp overlap

ChIP LNCaP_DHT24H GSE58428.FOXA1.LNCaP_DHT24H 221 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 384 bp overlap

ChIP DE DE-FOXA2-2 355 bp overlap

GATA2 2 datasets

ChIP LNCaP GSE38391.GATA2.LNCaP 66 bp overlap

ChIP LNCaP GSE52725.GATA2.LNCaP 66 bp overlap

GATA4 2 datasets

ChIP DE DE-GATA4-1 395 bp overlap

ChIP DE DE-GATA4-2 483 bp overlap

GATA6 4 datasets

ChIP DE DE-GATA6-1 350 bp overlap

ChIP DE DE-GATA6-2 425 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 405 bp overlap

ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 377 bp overlap

HIC2 1 dataset

Motif DE_60h DE_60h-HIC2_MA0738.2 6 bp overlap

IRF2 2 datasets

Motif DE_48h DE_48h-IRF2_MA0051.2 16 bp overlap

Motif DE_60h DE_60h-IRF2_MA0051.2 16 bp overlap

IRF5 1 dataset

Motif DE_60h DE_60h-IRF5_MA1420.1 14 bp overlap

ISL2 1 dataset

Motif DE_60h DE_60h-ISL2_MA0914.2 6 bp overlap

Isl1 1 dataset

Motif DE_60h DE_60h-Isl1_MA1608.2 7 bp overlap

MYOD1 1 dataset

ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 109 bp overlap

NANOG 4 datasets

ChIP WA01 ENCSR000BMT.NANOG.WA01 136 bp overlap

ChIP WA01 ENCSR000BMT.NANOG.WA01 208 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 467 bp overlap

ChIP hESC GSE18292.NANOG.hESC 111 bp overlap

NKX6-3 1 dataset

Motif DE_60h DE_60h-NKX6-3_MA1530.2 8 bp overlap

NR2C1 1 dataset

Motif DE_60h DE_60h-NR2C1_MA1535.2 6 bp overlap

NR2C2 1 dataset

Motif DE_60h DE_60h-NR2C2_MA1536.2 6 bp overlap

NR2F2 1 dataset

Motif DE_60h DE_60h-NR2F2_MA1111.2 7 bp overlap

NR4A1 1 dataset

Motif DE_60h DE_60h-NR4A1_MA1112.3 8 bp overlap

NR4A2 1 dataset

Motif DE_60h DE_60h-NR4A2_MA0160.3 8 bp overlap

Neurod2 2 datasets

Motif DE_48h DE_48h-Neurod2_MA1993.2 6 bp overlap

Motif DE_60h DE_60h-Neurod2_MA1993.2 6 bp overlap

Nr1H2 1 dataset

Motif DE_60h DE_60h-Nr1H2_MA1996.2 6 bp overlap

Nr1H4 1 dataset

Motif DE_60h DE_60h-Nr1H4_MA1110.3 6 bp overlap

Nr1h3 1 dataset

Motif DE_60h DE_60h-Nr1h3_MA2337.1 6 bp overlap

Nr2F6 1 dataset

Motif DE_60h DE_60h-Nr2F6_MA0728.1 15 bp overlap

Olig2 2 datasets

Motif DE_48h DE_48h-Olig2_MA1997.2 6 bp overlap

Motif DE_60h DE_60h-Olig2_MA1997.2 6 bp overlap

POU4F2 2 datasets

Motif DE_48h DE_48h-POU4F2_MA0683.2 15 bp overlap

Motif DE_60h DE_60h-POU4F2_MA0683.2 15 bp overlap

Ppara 1 dataset

Motif DE_60h DE_60h-Ppara_MA2338.1 7 bp overlap

Pparg::Rxra 1 dataset

Motif DE_60h DE_60h-PpargRxra_MA0065.3 13 bp overlap

Ptf1A 1 dataset

Motif DE_60h DE_60h-Ptf1A_MA1620.2 8 bp overlap

RARA 2 datasets

Motif DE_60h DE_60h-RARA_MA0729.1 18 bp overlap

RBPJ 1 dataset

Motif DE_60h DE_60h-RBPJ_MA1116.2 6 bp overlap

Rarb 1 dataset

Motif DE_60h DE_60h-Rarb_MA0857.1 16 bp overlap

Rarg 1 dataset

Motif DE_60h DE_60h-Rarg_MA0859.2 15 bp overlap

SMAD2-3 1 dataset

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 355 bp overlap

SMAD2_3 1 dataset

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 286 bp overlap

SMARCC1 1 dataset

ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 267 bp overlap

SNAI1 1 dataset

Motif DE_60h DE_60h-SNAI1_MA1558.2 7 bp overlap

SNAI3 1 dataset

Motif DE_60h DE_60h-SNAI3_MA1559.2 9 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 379 bp overlap

SOX2 2 datasets

ChIP HNSC GSE69479.SOX2.HNSC 352 bp overlap

ChIP hESC GSE18292.SOX2.hESC 98 bp overlap

SOX21 1 dataset

Motif DE_60h DE_60h-SOX21_MA0866.1 15 bp overlap

SP1 1 dataset

ChIP WA01 ENCSR000BIR.SP1.WA01 136 bp overlap

SP5 1 dataset

Motif DE_60h DE_60h-SP5_MA1965.2 6 bp overlap

SPIB 1 dataset

Motif DE_60h DE_60h-SPIB_MA0081.3 13 bp overlap

STAT1::STAT2 2 datasets

Motif DE_48h DE_48h-STAT1STAT2_MA0517.2 13 bp overlap

Motif DE_60h DE_60h-STAT1STAT2_MA0517.2 13 bp overlap

Sox1 1 dataset

Motif DE_60h DE_60h-Sox1_MA0870.1 15 bp overlap

Stat2 2 datasets

Motif DE_48h DE_48h-Stat2_MA1623.2 10 bp overlap

Motif DE_60h DE_60h-Stat2_MA1623.2 10 bp overlap

T 1 dataset

ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 327 bp overlap

TCF12 1 dataset

Motif DE_60h DE_60h-TCF12_MA1648.2 7 bp overlap

TCF3 2 datasets

Motif DE_60h DE_60h-TCF3_MA0522.4 7 bp overlap

ChIP NPC GSE154479.TCF3.NPC 231 bp overlap

TCF4 1 dataset

Motif DE_60h DE_60h-TCF4_MA0830.3 8 bp overlap

TEAD4 3 datasets

ChIP H1 ENCFF778PAX 245 bp overlap

ChIP MCF-7_BLRP_WT_Veh GSE125594.TEAD4.MCF-7_BLRP_WT_Veh 118 bp overlap

ChIP SK-MEL-147 GSE94488.TEAD4.SK-MEL-147 116 bp overlap

TFAP4 2 datasets

Motif DE_48h DE_48h-TFAP4_MA0691.1 10 bp overlap

Motif DE_60h DE_60h-TFAP4_MA0691.1 10 bp overlap

THRB 1 dataset

Motif DE_60h DE_60h-THRB_MA1576.2 18 bp overlap

TP53 1 dataset

ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 204 bp overlap

TRIM28 1 dataset

ChIP hESC GSE115387.TRIM28.hESC 193 bp overlap

Tcf12 2 datasets

Motif DE_48h DE_48h-Tcf12_MA0521.3 6 bp overlap

Motif DE_60h DE_60h-Tcf12_MA0521.3 6 bp overlap

Twist2 2 datasets

Motif DE_48h DE_48h-Twist2_MA0633.3 6 bp overlap

Motif DE_60h DE_60h-Twist2_MA0633.3 6 bp overlap

USF1 2 datasets

ChIP H1 ENCFF090WVU 241 bp overlap

ChIP WA01 ENCSR000BIU.USF1.WA01 168 bp overlap

YY1 1 dataset

ChIP WA01 ENCSR000BKD.YY1.WA01 417 bp overlap

ZEB1 1 dataset

Motif DE_60h DE_60h-ZEB1_MA0103.4 6 bp overlap

ZIC1 1 dataset

Motif DE_60h DE_60h-ZIC1_MA0696.1 14 bp overlap

ZIC2 1 dataset

ChIP HEK293 ENCFF033NQQ 471 bp overlap

ZIC4 1 dataset

Motif DE_60h DE_60h-ZIC4_MA0751.2 14 bp overlap

ZIC5 1 dataset

Motif DE_60h DE_60h-ZIC5_MA1584.2 15 bp overlap

ZKSCAN5 1 dataset

Motif DE_60h DE_60h-ZKSCAN5_MA1652.2 9 bp overlap

ZNF24 1 dataset

Motif DE_60h DE_60h-ZNF24_MA1124.1 13 bp overlap

ZNF423 1 dataset

ChIP WTC11 ENCFF574PBR 317 bp overlap

ZNF462 2 datasets

ChIP GM23338 ENCFF896CCA 251 bp overlap

ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 326 bp overlap

ZNF677 2 datasets

Motif DE_48h DE_48h-ZNF677_MA2101.1 12 bp overlap

Motif DE_60h DE_60h-ZNF677_MA2101.1 12 bp overlap

ZNF701 2 datasets

Motif DE_60h DE_60h-ZNF701_MA1987.2 17 bp overlap

Zfp809 1 dataset

Motif DE_60h DE_60h-Zfp809_MA2125.1 9 bp overlap

Zic1::Zic2 1 dataset

Motif DE_60h DE_60h-Zic1Zic2_MA1628.2 7 bp overlap

Zic2 1 dataset

Motif DE_60h DE_60h-Zic2_MA1629.2 9 bp overlap

Zic3 1 dataset

Motif DE_60h DE_60h-Zic3_MA0697.3 7 bp overlap