chr4 : 89,997,172 – 89,997,605
433 bp 69 TFs 1 linked gene
This 433 bp open chromatin element is linked to ENSG00000287239 and is bound by 69 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000287239 1.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:89,992,172 – 90,002,605
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
69 transcription factors
Source
Cell type
AR 2 datasets
ChIP MDA-MB-453 ERP001226.AR.MDA-MB-453 76 bp overlap
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 101 bp overlap
ARID1A 1 dataset
ChIP NGP GSE134626.ARID1A.NGP 433 bp overlap
ARID2 2 datasets
ChIP NGP GSE134626.ARID2.NGP 206 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.ARID2.NGP_ARID1A-mut2 214 bp overlap
BRD4 4 datasets
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 300 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 353 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 433 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 114 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 65 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 300 bp overlap
EP300 2 datasets
ChIP SK-N-SH ENCFF829RWA 241 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 174 bp overlap
ESR1 7 datasets
ChIP MCF-7 GSE48930.ESR1.MCF-7 68 bp overlap
ChIP MCF-7_E2+4OHT_SRC-3 GSE119702.ESR1.MCF-7_E2+4OHT_SRC-3 96 bp overlap
ChIP MCF-7_ICI GSE125594.ESR1.MCF-7_ICI 108 bp overlap
ChIP MCF-7_SRC3_OHT GSE119702.ESR1.MCF-7_SRC3_OHT 96 bp overlap
ChIP ZR751 ERP000783.ESR1.ZR751 115 bp overlap
ChIP ZR751 ERP000783.ESR1.ZR751 104 bp overlap
ChIP breast-cancer_3487 GSE126004.ESR1.breast-cancer_3487 433 bp overlap
ESRRA 1 dataset
ChIP BT-474_HRG GSE81651.ESRRA.BT-474_HRG 339 bp overlap
ESRRG 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR023KKB.ESRRG.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 188 bp overlap
FEZF1 2 datasets
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 179 bp overlap
ChIP HEK293 GSE76494.FEZF1.HEK293 173 bp overlap
FOXA1 6 datasets
ChIP MCF-7 GSE81714.FOXA1.MCF-7 81 bp overlap
ChIP MCF-7 ERP001226.FOXA1.MCF-7 75 bp overlap
ChIP MCF-7_E2 GSE23852.FOXA1.MCF-7_E2 60 bp overlap
ChIP MCF-7_E2_TAM ERP000380.FOXA1.MCF-7_E2_TAM 63 bp overlap
ChIP ZR751_E2_TAM ERP000380.FOXA1.ZR751_E2_TAM 98 bp overlap
ChIP breast-cancer_3487 GSE126004.FOXA1.breast-cancer_3487 433 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 421 bp overlap
ChIP DE DE-FOXA2-2 422 bp overlap
GATA2 7 datasets
Motif DE_36h DE_36h-GATA2_MA0036.4 7 bp overlap
Motif DE_60h DE_60h-GATA2_MA0036.4 7 bp overlap
ChIP SH-SY5Y ENCFF485YIB 317 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 433 bp overlap
ChIP SK-N-SH ENCFF764OZD 355 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 432 bp overlap
ChIP VCaP_JQ1 GSE125236.GATA2.VCaP_JQ1 202 bp overlap
GATA3 13 datasets
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 433 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 433 bp overlap
ChIP Kelly GSE94822.GATA3.Kelly 433 bp overlap
ChIP MCF-7 GSE122847.GATA3.MCF-7 282 bp overlap
ChIP MCF-7 GSE133072.GATA3.MCF-7 191 bp overlap
ChIP MCF-7_E2 GSE40129.GATA3.MCF-7_E2 86 bp overlap
ChIP MCF-7_E2_Dex GSE81510.GATA3.MCF-7_E2_Dex 142 bp overlap
ChIP NGP GSE65664.GATA3.NGP 415 bp overlap
ChIP SH-SY5Y ENCFF475HYF 374 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 433 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 433 bp overlap
ChIP SK-N-SH ENCFF040SSB 361 bp overlap
ChIP SK-N-SH ENCFF040SSB 148 bp overlap
GATA4 8 datasets
ChIP DE DE-GATA4-1 433 bp overlap
ChIP DE DE-GATA4-2 433 bp overlap
Motif DE_36h DE_36h-GATA4_MA0482.3 8 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 387 bp overlap
ChIP foregut GSE117136.GATA4.foregut 328 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 433 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 367 bp overlap
GATA5 2 datasets
Motif DE_36h DE_36h-GATA5_MA0766.3 8 bp overlap
Motif DE_60h DE_60h-GATA5_MA0766.3 8 bp overlap
GATA6 19 datasets
ChIP AGS GSE51705.GATA6.AGS 222 bp overlap
ChIP AGS GSE51936.GATA6.AGS 118 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 156 bp overlap
ChIP DE DE-GATA6-1 433 bp overlap
ChIP DE DE-GATA6-2 433 bp overlap
Motif DE_36h DE_36h-GATA6_MA1104.3 8 bp overlap
Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 433 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 433 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 433 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 433 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 433 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 433 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 143 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 433 bp overlap
ChIP foregut GSE117136.GATA6.foregut 415 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 271 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 302 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 279 bp overlap
Gata3 2 datasets
Motif DE_36h DE_36h-Gata3_MA0037.5 8 bp overlap
Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 433 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 433 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 433 bp overlap
Hoxa13 1 dataset
Motif DE_36h DE_36h-Hoxa13_MA0650.4 8 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 433 bp overlap
JUN 2 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 333 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 367 bp overlap
KDM1A 1 dataset
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 399 bp overlap
MAML3 2 datasets
ChIP SK-N-SH GSE69119.MAML3.SK-N-SH 366 bp overlap
ChIP SK-N-SH_RA GSE69119.MAML3.SK-N-SH_RA 327 bp overlap
MEIS1 1 dataset
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
MYCN 4 datasets
ChIP Kelly GSE94822.MYCN.Kelly 433 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 406 bp overlap
ChIP NB-1643 GSE94782.MYCN.NB-1643 138 bp overlap
ChIP NGP GSE80151.MYCN.NGP 248 bp overlap
NR1D2 2 datasets
Motif DE_36h DE_36h-NR1D2_MA1532.2 15 bp overlap
Motif DE_60h DE_60h-NR1D2_MA1532.2 15 bp overlap
NR3C1 1 dataset
ChIP MDA-MB-361 GSE152203.NR3C1.MDA-MB-361 79 bp overlap
NR4A1 1 dataset
Motif DE_36h DE_36h-NR4A1_MA1112.3 8 bp overlap
NR4A2 1 dataset
Motif DE_36h DE_36h-NR4A2_MA0160.3 8 bp overlap
NR6A1 1 dataset
Motif DE_36h DE_36h-NR6A1_MA1541.2 14 bp overlap
Nr2F6 1 dataset
Motif DE_36h DE_36h-Nr2F6_MA0728.1 15 bp overlap
ONECUT2 1 dataset
ChIP PC-3_normoxia GSE106305.ONECUT2.PC-3_normoxia 115 bp overlap
PAX5 1 dataset
ChIP fetal_testis GSE100639.PAX5.fetal_testis 135 bp overlap
PHOX2B 2 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 433 bp overlap
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 267 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 433 bp overlap
PRDM1 1 dataset
ChIP fetal_testis GSE100639.PRDM1.fetal_testis 141 bp overlap
PRDM9 1 dataset
Motif DE_36h DE_36h-PRDM9_MA1723.2 20 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 122 bp overlap
RARA 1 dataset
Motif DE_36h DE_36h-RARA_MA0730.1 17 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 325 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 319 bp overlap
Rarb 1 dataset
Motif DE_36h DE_36h-Rarb_MA0858.1 17 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 433 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 433 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 433 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 433 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 433 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 431 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 369 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 380 bp overlap
SMARCA4 5 datasets
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 79 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 174 bp overlap
ChIP NGP GSE134626.SMARCA4.NGP 433 bp overlap
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 282 bp overlap
ChIP NGP_ARID1A-mut1 GSE134626.SMARCA4.NGP_ARID1A-mut1 433 bp overlap
SMARCB1 1 dataset
ChIP hiPSC GSE124903.SMARCB1.hiPSC 256 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 433 bp overlap
SNAI2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR106GVM.SNAI2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 153 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 259 bp overlap
SOX21 1 dataset
Motif DE_36h DE_36h-SOX21_MA0866.1 15 bp overlap
SPIC 1 dataset
Motif DE_36h DE_36h-SPIC_MA0687.2 13 bp overlap
SREBF2 2 datasets
Motif DE_36h DE_36h-SREBF2_MA0596.1 10 bp overlap
Motif DE_60h DE_60h-SREBF2_MA0596.1 10 bp overlap
SS18 1 dataset
ChIP NGP_ARID1A-mut1 GSE134626.SS18.NGP_ARID1A-mut1 180 bp overlap
STAT3 1 dataset
ChIP breast-cancer_3487 GSE126004.STAT3.breast-cancer_3487 224 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 179 bp overlap
TBX2 2 datasets
ChIP Kelly GSE94822.TBX2.Kelly 433 bp overlap
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 263 bp overlap
TCF4 1 dataset
ChIP SK-N-SH ENCFF270OWF 268 bp overlap
TCF7L2 2 datasets
ChIP HEK293 ENCFF513JQN 401 bp overlap
ChIP HEK293 ENCSR000EUY.TCF7L2.HEK293 394 bp overlap
TEAD4 2 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 326 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 326 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 241 bp overlap
TOX2 3 datasets
ChIP SK-N-SH ENCFF415OYE 297 bp overlap
ChIP SK-N-SH ENCFF415OYE 110 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR226NRS.TOX2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 349 bp overlap
TP63 4 datasets
ChIP keratinocyte_D0 GSE59824.TP63.keratinocyte_D0 57 bp overlap
ChIP keratinocyte_D2 GSE59824.TP63.keratinocyte_D2 85 bp overlap
ChIP keratinocyte_D4 GSE59824.TP63.keratinocyte_D4 76 bp overlap
ChIP keratinocyte_D7 GSE59824.TP63.keratinocyte_D7 75 bp overlap
TRPS1 2 datasets
Motif DE_36h DE_36h-TRPS1_MA1970.2 8 bp overlap
Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap
TSHZ2 2 datasets
ChIP SK-N-SH ENCFF182EBB 282 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 433 bp overlap
ZNF274 1 dataset
Motif DE_36h DE_36h-ZNF274_MA1592.2 12 bp overlap
ZNF530 1 dataset
Motif DE_36h DE_36h-ZNF530_MA1981.2 14 bp overlap
ZNF652 1 dataset
Motif DE_36h DE_36h-ZNF652_MA1657.2 9 bp overlap
ZNF667 1 dataset
Motif DE_36h DE_36h-ZNF667_MA1984.2 11 bp overlap
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