chr4 : 55,157,544 – 55,157,877
333 bp 62 TFs 1 linked gene
This 333 bp open chromatin element is linked to ENSG00000287060 and is bound by 62 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000287060 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:55,152,544 – 55,162,877
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
62 transcription factors
Source
Cell type
AATF 1 dataset
ChIP NALM-6 GSE93626.AATF.NALM-6 151 bp overlap
ARID1A 1 dataset
ChIP H9 GSE139260.ARID1A.H9 212 bp overlap
ATF1 1 dataset
ChIP HCT-116 GSE130477.ATF1.HCT-116 246 bp overlap
BRD4 4 datasets
ChIP LNCaP-clone-FGC_DHT-Enzalutamide GSE118247.BRD4.LNCaP-clone-FGC_DHT-Enzalutamide 193 bp overlap
ChIP hESC GSE33281.BRD4.hESC 101 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 129 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 256 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 333 bp overlap
CHD1 1 dataset
ChIP hMSC-TERT_osteoblast GSE89179.CHD1.hMSC-TERT_osteoblast 284 bp overlap
CHD8 1 dataset
ChIP T-47D_ETOH_5 GSE62428.CHD8.T-47D_ETOH_5 160 bp overlap
CTCF 2 datasets
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 143 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 159 bp overlap
CTCFL 1 dataset
ChIP K-562 GSE70764.CTCFL.K-562 250 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF335XTP 333 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 96 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 179 bp overlap
ELF1 1 dataset
ChIP A-549 GSE122203.ELF1.A-549 112 bp overlap
EP300 1 dataset
ChIP osteoblast ENCSR000AUD.EP300.osteoblast 333 bp overlap
ERG 1 dataset
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 299 bp overlap
ESR1 3 datasets
ChIP Ishikawa GSE99905.ESR1.Ishikawa 295 bp overlap
ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 320 bp overlap
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 227 bp overlap
EZH1 3 datasets
ChIP ProEs GSE59087.EZH1.ProEs 151 bp overlap
ChIP ProEs_SHCTR GSE59087.EZH1.ProEs_SHCTR 203 bp overlap
ChIP ProEs_SHEZH2 GSE59087.EZH1.ProEs_SHEZH2 170 bp overlap
EZH2 7 datasets
ChIP K562 ENCFF494QJK 79 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 258 bp overlap
ChIP ProEs_SHCTR GSE59087.EZH2.ProEs_SHCTR 184 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 145 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 333 bp overlap
ChIP keratinocyte ENCSR000ARK.EZH2.keratinocyte 150 bp overlap
ChIP prostate-cancer_plko GSE107780.EZH2.prostate-cancer_plko 209 bp overlap
FLI1 3 datasets
ChIP ME-1 GSE46044.FLI1.ME-1 163 bp overlap
ChIP TSU-1621MT GSE60477.FLI1.TSU-1621MT 333 bp overlap
ChIP UAE GSE23730.FLI1.UAE 238 bp overlap
GATA2 1 dataset
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 248 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 264 bp overlap
HNRNPLL 1 dataset
ChIP K-562 ENCSR112RNT.HNRNPLL.K-562 82 bp overlap
JUN 2 datasets
ChIP HUES-8 GSE109524.JUN.HUES-8 245 bp overlap
ChIP MCF-7_DMSO GSE157385.JUN.MCF-7_DMSO 286 bp overlap
KDM6B 1 dataset
ChIP CUTLL1 GSE56694.KDM6B.CUTLL1 267 bp overlap
LMO2 1 dataset
ChIP Kasumi-1_SIRUNX1ETO GSE60130.LMO2.Kasumi-1_SIRUNX1ETO 216 bp overlap
MAX 1 dataset
ChIP WTC11 ENCFF223QFY 333 bp overlap
MYOD1 1 dataset
ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 264 bp overlap
NCAPH2 1 dataset
ChIP HEK293 GSE97540.NCAPH2.HEK293 284 bp overlap
NELFE 1 dataset
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 94 bp overlap
NR2F2 1 dataset
ChIP MCF-7_Veh GSE132432.NR2F2.MCF-7_Veh 333 bp overlap
NR3C1 1 dataset
ChIP A-549 ENCSR000BJR.NR3C1.A-549 117 bp overlap
NRL 1 dataset
ChIP retina_Hu13 GSE137311.NRL.retina_Hu13 261 bp overlap
OGG1 4 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 263 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 333 bp overlap
ChIP HEK293_30_min GSE89017.OGG1.HEK293_30_min 272 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 333 bp overlap
PGR 2 datasets
ChIP myometrium_NP1 GSE137550.PGR.myometrium_NP1 162 bp overlap
ChIP myometrium_NP1 GSE137550.PGR.myometrium_NP1 102 bp overlap
POU5F1 3 datasets
ChIP BG03 GSE21614.POU5F1.BG03 333 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 333 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 330 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 285 bp overlap
RARA 1 dataset
ChIP TSU-1621MT GSE60477.RARA.TSU-1621MT 219 bp overlap
RELA 1 dataset
ChIP HEK293_TNF-1h GSE75562.RELA.HEK293_TNF-1h 333 bp overlap
RNF2 1 dataset
ChIP fibroblast GSE139053.RNF2.fibroblast 164 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 333 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 333 bp overlap
RUNX1 2 datasets
ChIP AML_age-50-70 GSE111821.RUNX1.AML_age-50-70 175 bp overlap
ChIP Jurkat GSE85524.RUNX1.Jurkat 333 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1_CEBPA-ER_E2 GSE102697.RUNX1T1.Kasumi-1_CEBPA-ER_E2 198 bp overlap
RXR 1 dataset
ChIP TSU-1621MT GSE60477.RXR.TSU-1621MT 266 bp overlap
SIRT6 1 dataset
ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 159 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 256 bp overlap
SOX11 1 dataset
ChIP GRANT-A519 GSE52146.SOX11.GRANT-A519 76 bp overlap
SPI1 1 dataset
ChIP macrophage_IFNG GSE47188.SPI1.macrophage_IFNG 333 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 333 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 327 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 333 bp overlap
SUZ12 3 datasets
ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 333 bp overlap
ChIP CRL-7250_shSS18-SSX GSE108025.SUZ12.CRL-7250_shSS18-SSX 333 bp overlap
ChIP K-562 ENCSR000AUC.SUZ12.K-562 90 bp overlap
TAL1 1 dataset
ChIP ME-1 GSE46044.TAL1.ME-1 235 bp overlap
TEAD4 1 dataset
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 95 bp overlap
TFIIIC 1 dataset
ChIP HEK293 GSE119418.TFIIIC.HEK293 289 bp overlap
TP63 2 datasets
ChIP breast-organoid GSE113909.TP63.breast-organoid 179 bp overlap
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 278 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 309 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 249 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 333 bp overlap
YY1 1 dataset
ChIP HEK293T_control GSE128106.YY1.HEK293T_control 261 bp overlap
ZBTB48 2 datasets
ChIP U2OS GSE96776.ZBTB48.U2OS 315 bp overlap
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 333 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_DHT GSE123089.ZBTB7A.VCaP_DHT 253 bp overlap
ZNF263 1 dataset
ChIP K-562 ENCSR000EWN.ZNF263.K-562 142 bp overlap
ZNF891 1 dataset
ChIP Hep-G2 ENCSR020CLV.ZNF891.Hep-G2 155 bp overlap
Huangfu Lab · Publications · Resources · Contact