chr4 : 54,659,494 – 54,659,691
197 bp 61 TFs 1 linked gene
This 197 bp open chromatin element is linked to KIT and is bound by 61 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
KIT 1.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:54,654,494 – 54,664,691
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
61 transcription factors
Source
Cell type
AR 2 datasets
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 186 bp overlap
ChIP breast-cancer_ENOB-995 GSE128018.AR.breast-cancer_ENOB-995 90 bp overlap
ARID2 1 dataset
ChIP Aska-SS GSE108025.ARID2.Aska-SS 173 bp overlap
BCL11A 8 datasets
ChIP CD34_Day5_30min GSE104676.BCL11A.CD34_Day5_30min 88 bp overlap
ChIP CD34_Day7_30min GSE104676.BCL11A.CD34_Day7_30min 85 bp overlap
ChIP CD34_Day7_60min GSE104676.BCL11A.CD34_Day7_60min 75 bp overlap
ChIP CD34_Day7_90min GSE104676.BCL11A.CD34_Day7_90min 85 bp overlap
ChIP CD34_Day9_15min GSE104676.BCL11A.CD34_Day9_15min 53 bp overlap
ChIP CD34_Day9_30min GSE104676.BCL11A.CD34_Day9_30min 124 bp overlap
ChIP CD34_Day9_60min GSE104676.BCL11A.CD34_Day9_60min 88 bp overlap
ChIP CD34_Day9_90min GSE104676.BCL11A.CD34_Day9_90min 86 bp overlap
BMPR1A 1 dataset
ChIP HUVEC-C GSE60156.BMPR1A.HUVEC-C 197 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 197 bp overlap
BRD2 2 datasets
ChIP THP-1_DMSO GSE138084.BRD2.THP-1_DMSO 197 bp overlap
ChIP THP-1_iBET-BD2 GSE138084.BRD2.THP-1_iBET-BD2 75 bp overlap
BRD4 1 dataset
ChIP MPNST_PDJQ GSE62499.BRD4.MPNST_PDJQ 110 bp overlap
CBX2 1 dataset
ChIP K-562 ENCSR000ATU.CBX2.K-562 131 bp overlap
CBX8 2 datasets
ChIP A-549 ENCSR616MOB.CBX8.A-549 197 bp overlap
ChIP K562 ENCFF485TBL 178 bp overlap
CDK8 1 dataset
ChIP SET-2 GSE65138.CDK8.SET-2 143 bp overlap
CDKN1B 1 dataset
ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 197 bp overlap
CHD4 1 dataset
ChIP pre-B-cell GSE107886.CHD4.pre-B-cell 197 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 197 bp overlap
CTCF 13 datasets
ChIP 22Rv1_hydroxy_10nM_4h ENCSR847XGE.CTCF.22Rv1_hydroxy_10nM_4h 197 bp overlap
ChIP HEK293 ENCSR617IFZ.CTCF.HEK293 140 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 197 bp overlap
ChIP K-562_RabbitC GSE137216.CTCF.K-562_RabbitC 163 bp overlap
ChIP SH-SY5Y GSE101295.CTCF.SH-SY5Y 167 bp overlap
ChIP THP-1_Pam3csk-060m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-060m-Flavo-000m 146 bp overlap
ChIP THP-1_Pam3csk-180m-Flavo-060m GSE103477.CTCF.THP-1_Pam3csk-180m-Flavo-060m 133 bp overlap
ChIP THP-1_siCtrl-NS1-Pam3csk-4h GSE103477.CTCF.THP-1_siCtrl-NS1-Pam3csk-4h 160 bp overlap
ChIP THP-1_siCtrl-eGFP-Pam3csk-0h GSE103477.CTCF.THP-1_siCtrl-eGFP-Pam3csk-0h 63 bp overlap
ChIP aorta_thoracic ENCSR668BTN.CTCF.aorta_thoracic 165 bp overlap
ChIP astrocyte_cerebellum ENCSR000DSZ.CTCF.astrocyte_cerebellum 98 bp overlap
ChIP heart right ventricle ENCFF979TCT 197 bp overlap
ChIP thyroid gland ENCFF300RYK 197 bp overlap
CTCFL 1 dataset
ChIP FT282 GSE131931.CTCFL.FT282 197 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 197 bp overlap
EBF1 1 dataset
ChIP NALM-6 GSE126300.EBF1.NALM-6 191 bp overlap
ETS1 6 datasets
ChIP HUVEC-C_12h GSE93030.ETS1.HUVEC-C_12h 127 bp overlap
ChIP HUVEC-C_4h GSE93030.ETS1.HUVEC-C_4h 173 bp overlap
ChIP HUVEC-C_VEGF_12H GSE41166.ETS1.HUVEC-C_VEGF_12H 127 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.ETS1.HUVEC-C_VEGF_12h 127 bp overlap
ChIP HUVEC-C_VEGF_4H GSE41166.ETS1.HUVEC-C_VEGF_4H 173 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.ETS1.HUVEC-C_VEGF_4h 173 bp overlap
EZH2 9 datasets
ChIP B-cell ENCSR000AUZ.EZH2.B-cell 197 bp overlap
ChIP GM23338 ENCFF613YON 67 bp overlap
ChIP GM23338 ENCSR045YHA.EZH2.GM23338 184 bp overlap
ChIP HCT-116 ENCSR046HGP.EZH2.HCT-116 197 bp overlap
ChIP Hep-G2 ENCSR000ARI.EZH2.Hep-G2 140 bp overlap
ChIP RL_CPI169-10d GSE134136.EZH2.RL_CPI169-10d 179 bp overlap
ChIP keratinocyte ENCFF070STK 197 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 197 bp overlap
ChIP neural progenitor cell ENCFF472NFV 129 bp overlap
EZH2_phosphoT487 2 datasets
ChIP PC-3 ENCSR617RSQ.EZH2_phosphoT487.PC-3 197 bp overlap
ChIP hepatocyte ENCSR341VYI.EZH2_phosphoT487.hepatocyte 197 bp overlap
FOXA1 1 dataset
ChIP LNCaP_TFS GSE123618.FOXA1.LNCaP_TFS 50 bp overlap
GLIS1 1 dataset
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 197 bp overlap
GLIS2 1 dataset
ChIP HEK293 ENCSR535DIA.GLIS2.HEK293 197 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 197 bp overlap
HDAC1 1 dataset
ChIP K-562 ENCSR387UWP.HDAC1.K-562 197 bp overlap
IKZF1 1 dataset
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 148 bp overlap
JMJD1C 1 dataset
ChIP Kasumi-1 GSE63484.JMJD1C.Kasumi-1 197 bp overlap
JUN 2 datasets
ChIP MCF-7_DMSO GSE157385.JUN.MCF-7_DMSO 50 bp overlap
ChIP MDA-MB-231 GSE112444.JUN.MDA-MB-231 195 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 103 bp overlap
KDM5B 1 dataset
ChIP K-562 ENCSR000AQA.KDM5B.K-562 106 bp overlap
KMT2A 2 datasets
ChIP HEK293T_N-term_shCtrl GSE90762.KMT2A.HEK293T_N-term_shCtrl 197 bp overlap
ChIP THP-1 GSE83671.KMT2A.THP-1 140 bp overlap
MAZ 1 dataset
ChIP K-562 ENCSR163IUV.MAZ.K-562 122 bp overlap
MBD1 1 dataset
ChIP K562 ENCFF741LIL 168 bp overlap
MEN1 1 dataset
ChIP IMS-M2_DMSO GSE129636.MEN1.IMS-M2_DMSO 65 bp overlap
MTA2 1 dataset
ChIP pre-B-cell GSE107886.MTA2.pre-B-cell 170 bp overlap
MYCN 1 dataset
ChIP NB-1643 GSE138295.MYCN.NB-1643 117 bp overlap
NFATC3 1 dataset
ChIP Hep-G2 GSE97661.NFATC3.Hep-G2 197 bp overlap
NR2F1 2 datasets
ChIP K-562 ENCSR970NKQ.NR2F1.K-562 197 bp overlap
ChIP K562 ENCFF221HJH 197 bp overlap
NR2F2 1 dataset
ChIP liver ENCSR338MMB.NR2F2.liver 136 bp overlap
NR2F6 1 dataset
ChIP K-562 ENCSR707QWA.NR2F6.K-562 142 bp overlap
PHIP 3 datasets
ChIP HCT-116_MLL4-SET-KO_ab833 GSE101646.PHIP.HCT-116_MLL4-SET-KO_ab833 197 bp overlap
ChIP HCT-116_MLL4-SET-KO_ab834 GSE101646.PHIP.HCT-116_MLL4-SET-KO_ab834 197 bp overlap
ChIP HCT-116_ab834 GSE101646.PHIP.HCT-116_ab834 197 bp overlap
RAD21 1 dataset
ChIP RH4 GSE83726.RAD21.RH4 176 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 162 bp overlap
RNF2 3 datasets
ChIP K-562 ENCSR138FUZ.RNF2.K-562 127 bp overlap
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 161 bp overlap
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 145 bp overlap
RUNX1 1 dataset
ChIP VCaP_DHT24H GSE58428.RUNX1.VCaP_DHT24H 197 bp overlap
SIN3A 1 dataset
ChIP HUVEC-C GSE103245.SIN3A.HUVEC-C 131 bp overlap
SMARCA4 4 datasets
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 197 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 161 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 102 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 172 bp overlap
SMARCB1 1 dataset
ChIP hiPSC GSE124903.SMARCB1.hiPSC 197 bp overlap
SMARCC1 2 datasets
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 197 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 101 bp overlap
SS18 1 dataset
ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 149 bp overlap
SUZ12 4 datasets
ChIP GM12878 ENCFF498QAM 152 bp overlap
ChIP GM12878 ENCFF498QAM 197 bp overlap
ChIP K-562 ENCSR412CTM.SUZ12.K-562 118 bp overlap
ChIP hiPSC_WT GSE124903.SUZ12.hiPSC_WT 197 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 166 bp overlap
TCF3 1 dataset
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 197 bp overlap
UBTF 1 dataset
ChIP K-562 ENCSR000EFZ.UBTF.K-562 197 bp overlap
USF1 1 dataset
ChIP WA01 ENCSR000BIU.USF1.WA01 121 bp overlap
VDR 1 dataset
ChIP THP-1_1d_1-25-OH-2D3 GSE89431.VDR.THP-1_1d_1-25-OH-2D3 197 bp overlap
ZBTB7A 3 datasets
ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 197 bp overlap
ChIP Ishikawa ENCSR000BSZ.ZBTB7A.Ishikawa 136 bp overlap
ChIP K-562 GSE103445.ZBTB7A.K-562 197 bp overlap
ZEB1 1 dataset
ChIP GM12878 ENCSR000BND.ZEB1.GM12878 140 bp overlap
ZEB2 1 dataset
ChIP K-562 ENCSR004GKA.ZEB2.K-562 92 bp overlap
ZNF335 1 dataset
ChIP HEK293 ENCFF784SLD 197 bp overlap
ZNF407 1 dataset
ChIP Hep-G2 ENCSR005WGY.ZNF407.Hep-G2 78 bp overlap
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