chr4 : 54,254,184 – 54,255,091

907 bp 87 TFs 0 linked genes

This 907 bp open chromatin element has no linked target genes and is bound by 87 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

87 transcription factors

ARID1A 1 dataset

ChIP 12Z GSE129781.ARID1A.12Z 324 bp overlap

BARX1 1 dataset

Motif DE_12h DE_12h-BARX1_MA0875.2 6 bp overlap

BCOR 1 dataset

ChIP K-562 ENCSR808AKZ.BCOR.K-562 155 bp overlap

BRD2 1 dataset

ChIP THP-1_iBET-BD1 GSE138084.BRD2.THP-1_iBET-BD1 303 bp overlap

BSX 1 dataset

Motif DE_12h DE_12h-BSX_MA0876.2 6 bp overlap

CEBPA 5 datasets

ChIP Kasumi-1_CEBPA-ER_E2 GSE102697.CEBPA.Kasumi-1_CEBPA-ER_E2 136 bp overlap

ChIP MV4-11 GSE88746.CEBPA.MV4-11 312 bp overlap

ChIP THP-1_1-25D_8h GSE124032.CEBPA.THP-1_1-25D_8h 58 bp overlap

ChIP THP-1_EtOH_2h GSE124032.CEBPA.THP-1_EtOH_2h 210 bp overlap

ChIP THP-1_EtOH_8h GSE124032.CEBPA.THP-1_EtOH_8h 214 bp overlap

CEBPB 3 datasets

ChIP HFOB_DIFF GSE82295.CEBPB.HFOB_DIFF 276 bp overlap

ChIP HFOB_DIFF GSE82295.CEBPB.HFOB_DIFF 324 bp overlap

ChIP MV4-11 GSE88746.CEBPB.MV4-11 340 bp overlap

CTNNB1 1 dataset

ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 341 bp overlap

DLX1 1 dataset

Motif DE_12h DE_12h-DLX1_MA0879.3 6 bp overlap

DLX6 1 dataset

Motif DE_12h DE_12h-DLX6_MA0882.2 6 bp overlap

Dlx2 1 dataset

Motif DE_12h DE_12h-Dlx2_MA0885.3 8 bp overlap

Dlx3 1 dataset

Motif DE_12h DE_12h-Dlx3_MA0880.2 6 bp overlap

Dlx4 1 dataset

Motif DE_12h DE_12h-Dlx4_MA0881.2 6 bp overlap

Dlx5 1 dataset

Motif DE_12h DE_12h-Dlx5_MA1476.3 8 bp overlap

E2F6 1 dataset

ChIP WA01 ENCSR000BSI.E2F6.WA01 177 bp overlap

EOMES 2 datasets

ChIP hESC GSE26097.EOMES.hESC 212 bp overlap

ChIP hESC GSE26097.EOMES.hESC 379 bp overlap

ESR1 4 datasets

ChIP U2OS_100nM-E2 GSE151039.ESR1.U2OS_100nM-E2 315 bp overlap

ChIP U2OS_10nM-E2 GSE151039.ESR1.U2OS_10nM-E2 237 bp overlap

ChIP U2OS_10nM-E2-B GSE151039.ESR1.U2OS_10nM-E2-B 253 bp overlap

ChIP U2OS_E2 GSE26110.ESR1.U2OS_E2 172 bp overlap

ESR1_Y537N 1 dataset

ChIP MCF-7_dox_E2 GSE94493.ESR1_Y537N.MCF-7_dox_E2 71 bp overlap

FOXA1 1 dataset

Motif DE_12h DE_12h-FOXA1_MA0148.5 8 bp overlap

FOXA2 5 datasets

ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 226 bp overlap

ChIP BJ1-hTERT_MimoRelease GSE92491.FOXA2.BJ1-hTERT_MimoRelease 259 bp overlap

ChIP DE DE-FOXA2-1 744 bp overlap

ChIP DE DE-FOXA2-2 737 bp overlap

Motif DE_12h DE_12h-FOXA2_MA0047.4 8 bp overlap

FOXA3 1 dataset

Motif DE_12h DE_12h-FOXA3_MA1683.2 7 bp overlap

FOXB1 1 dataset

Motif DE_12h DE_12h-FOXB1_MA0845.1 11 bp overlap

FOXC1 1 dataset

Motif DE_12h DE_12h-FOXC1_MA0032.2 11 bp overlap

FOXC2 1 dataset

Motif DE_12h DE_12h-FOXC2_MA0846.2 11 bp overlap

FOXI1 1 dataset

Motif DE_12h DE_12h-FOXI1_MA0042.2 7 bp overlap

FOXL2 1 dataset

ChIP KGN_1512 GSE138496.FOXL2.KGN_1512 204 bp overlap

FOXP1 1 dataset

Motif DE_12h DE_12h-FOXP1_MA0481.4 7 bp overlap

FOXP4 1 dataset

Motif DE_12h DE_12h-FOXP4_MA2117.1 7 bp overlap

FOXS1 1 dataset

Motif DE_12h DE_12h-FOXS1_MA2118.1 8 bp overlap

Foxl2 1 dataset

Motif DE_12h DE_12h-Foxl2_MA1607.2 10 bp overlap

GATA2 3 datasets

ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 183 bp overlap

ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 132 bp overlap

ChIP primary-endometrial-stromal-cell_IVD_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P2 341 bp overlap

GATA4 4 datasets

ChIP BJ1-hTERT GSE92491.GATA4.BJ1-hTERT 412 bp overlap

ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 175 bp overlap

ChIP DE DE-GATA4-1 428 bp overlap

ChIP DE DE-GATA4-2 260 bp overlap

GATA6 8 datasets

ChIP DE DE-GATA6-2 607 bp overlap

ChIP DE_D1 S09-DE-d1-GATA6-exp1 907 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 907 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 871 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 642 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 907 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 907 bp overlap

ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 438 bp overlap

GBX2 1 dataset

Motif DE_12h DE_12h-GBX2_MA0890.2 6 bp overlap

HES7 1 dataset

Motif DE_12h DE_12h-HES7_MA0822.1 12 bp overlap

HESX1 1 dataset

Motif DE_12h DE_12h-HESX1_MA0894.2 6 bp overlap

HOXA7 1 dataset

Motif DE_12h DE_12h-HOXA7_MA1498.3 6 bp overlap

HOXB8 1 dataset

ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 234 bp overlap

JUN 4 datasets

ChIP DE_D1 S08-DE-d1-JUN-exp1 721 bp overlap

ChIP DE_D1 S40-DE-d1-JUN-exp2 591 bp overlap

ChIP DE_D2 S02-DE-d2-JUN-exp1 308 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 679 bp overlap

KDM1A 1 dataset

ChIP H1 ENCFF696SGD 249 bp overlap

LBX2 1 dataset

Motif DE_12h DE_12h-LBX2_MA0699.2 6 bp overlap

LHX2 1 dataset

Motif DE_12h DE_12h-LHX2_MA0700.3 6 bp overlap

MAX 1 dataset

ChIP H1 ENCFF914VQY 357 bp overlap

MED1 1 dataset

ChIP SGBS GSE64233.MED1.SGBS 185 bp overlap

MGA::EVX1 1 dataset

Motif DE_12h DE_12h-MGAEVX1_MA1960.2 11 bp overlap

MSX1 1 dataset

Motif DE_12h DE_12h-MSX1_MA0666.3 6 bp overlap

MSX2 1 dataset

Motif DE_12h DE_12h-MSX2_MA0708.3 6 bp overlap

MXI1 1 dataset

Motif DE_12h DE_12h-MXI1_MA1108.3 6 bp overlap

MYB 1 dataset

ChIP THP-1 GSE90769.MYB.THP-1 106 bp overlap

Msx3 1 dataset

Motif DE_12h DE_12h-Msx3_MA0709.2 6 bp overlap

NCAPH2 1 dataset

ChIP IMR-90_FLAG_G GSE118494.NCAPH2.IMR-90_FLAG_G 399 bp overlap

NCOR1 1 dataset

ChIP LS180 GSE39277.NCOR1.LS180 93 bp overlap

NEUROG2 4 datasets

ChIP MRC-5_NFD_02DPT GSE75910.NEUROG2.MRC-5_NFD_02DPT 233 bp overlap

ChIP MRC-5_NFD_05DPT GSE75910.NEUROG2.MRC-5_NFD_05DPT 199 bp overlap

ChIP MRC-5_NFD_1DPT GSE75910.NEUROG2.MRC-5_NFD_1DPT 212 bp overlap

ChIP MRC-5_N_02DPT GSE75910.NEUROG2.MRC-5_N_02DPT 137 bp overlap

NFIC 1 dataset

ChIP SK-N-SH ENCSR000BSV.NFIC.SK-N-SH 157 bp overlap

Nobox 1 dataset

Motif DE_12h DE_12h-Nobox_MA0125.2 6 bp overlap

OSR2 1 dataset

Motif DE_12h DE_12h-OSR2_MA1646.2 8 bp overlap

PGR 1 dataset

ChIP myometrium_NP1 GSE137550.PGR.myometrium_NP1 278 bp overlap

POLR2A 2 datasets

ChIP spleen ENCFF044PYR 152 bp overlap

ChIP spleen ENCFF446ZGT 231 bp overlap

POU2F1 1 dataset

Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap

POU2F2 1 dataset

Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap

POU2F3 1 dataset

Motif DE_12h DE_12h-POU2F3_MA0627.3 9 bp overlap

POU3F1 1 dataset

Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap

POU3F3 1 dataset

Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap

POU5F1 3 datasets

ChIP BG03 GSE21614.POU5F1.BG03 153 bp overlap

Motif DE_12h DE_12h-POU5F1_MA1115.2 7 bp overlap

ChIP DE_D1 DED1-OCT4_Batch_II 377 bp overlap

POU5F1B 1 dataset

Motif DE_12h DE_12h-POU5F1B_MA0792.1 9 bp overlap

POU5F1_M 1 dataset

ChIP DE_D1 DED1-OCT4-M_Batch_II 455 bp overlap

Pou5f1::Sox2 1 dataset

Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap

RAX 1 dataset

Motif DE_12h DE_12h-RAX_MA0718.2 6 bp overlap

RBM25 3 datasets

ChIP K-562 ENCSR791OZM.RBM25.K-562 90 bp overlap

ChIP K562 ENCFF248CGR 129 bp overlap

ChIP K562 ENCFF957ORK 130 bp overlap

RELA 2 datasets

ChIP IMR-90_TNF GSE43070.RELA.IMR-90_TNF 193 bp overlap

ChIP SGBS_TNF GSE64233.RELA.SGBS_TNF 263 bp overlap

SMAD2-3 3 datasets

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 373 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 907 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 907 bp overlap

SMAD2_3 5 datasets

ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 703 bp overlap

ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 899 bp overlap

ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 907 bp overlap

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 463 bp overlap

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 432 bp overlap

SMAD3 2 datasets

ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 278 bp overlap

ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 239 bp overlap

SMARCA4 1 dataset

ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 407 bp overlap

SMARCC1 2 datasets

ChIP DE_D1 S10-DE-d1-BAF155-exp1 245 bp overlap

ChIP DE_D1 S15-DE-d1-BAF155-exp1 759 bp overlap

STAT1 1 dataset

ChIP CD14_LPS GSE43036.STAT1.CD14_LPS 123 bp overlap

STAT1_pS727 1 dataset

ChIP SET-2 GSE100566.STAT1_pS727.SET-2 191 bp overlap

T 2 datasets

ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 219 bp overlap

ChIP H9_MESODERM GSE60606.T.H9_MESODERM 488 bp overlap

TBXT 1 dataset

Motif DE_12h DE_12h-TBXT_MA0009.2 16 bp overlap

TCF21 1 dataset

ChIP HCASMC GSE124011.TCF21.HCASMC 195 bp overlap

ZFP36 1 dataset

ChIP K-562 ENCSR776CYN.ZFP36.K-562 78 bp overlap

ZMYM3 3 datasets

ChIP K-562 ENCSR102KIN.ZMYM3.K-562 107 bp overlap

ChIP K-562_Ab_JH39-2-2F10 GSE97661.ZMYM3.K-562_Ab_JH39-2-2F10 55 bp overlap

ChIP K562 ENCFF361LXT 129 bp overlap

ZNF324 2 datasets

Motif DE_12h DE_12h-ZNF324_MA1977.2 14 bp overlap

Motif DE_36h DE_36h-ZNF324_MA1977.2 14 bp overlap

ZNF667 1 dataset

Motif DE_12h DE_12h-ZNF667_MA1984.2 11 bp overlap

ZNF708 2 datasets

Motif DE_12h DE_12h-ZNF708_MA1730.2 9 bp overlap

Motif DE_36h DE_36h-ZNF708_MA1730.2 9 bp overlap

ZNF768 1 dataset

ChIP HepG2 ENCFF388QCK 192 bp overlap

Zfp809 2 datasets

Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap

Motif DE_36h DE_36h-Zfp809_MA2125.1 9 bp overlap