chr3 : 188,216,824 188,217,451
627 bp 62 TFs 1 linked gene
This 627 bp open chromatin element is linked to LPP and is bound by 62 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LPP 4.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:188,211,824 – 188,222,451
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
62 transcription factors
Source
Cell type
AR 1 dataset
ChIP breast-cancer_ENOB-2854 GSE128018.AR.breast-cancer_ENOB-2854 297 bp overlap
BCL11B 2 datasets
ChIP thymus_CD34neg GSE84677.BCL11B.thymus_CD34neg 496 bp overlap
ChIP thymus_CD34pos GSE84677.BCL11B.thymus_CD34pos 235 bp overlap
BCL6 3 datasets
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 207 bp overlap
ChIP OCI-Ly7 GSE44420.BCL6.OCI-Ly7 198 bp overlap
ChIP SU-DHL-4 GSE119038.BCL6.SU-DHL-4 547 bp overlap
BRD4 7 datasets
ChIP Jurkat GSE83777.BRD4.Jurkat 129 bp overlap
ChIP Jurkat GSE83777.BRD4.Jurkat 219 bp overlap
ChIP KOPT-K1_E GSE54379.BRD4.KOPT-K1_E 261 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 183 bp overlap
ChIP Mutu-1_vehicle GSE84213.BRD4.Mutu-1_vehicle 627 bp overlap
ChIP OCI-Ly1_JQ1 GSE53601.BRD4.OCI-Ly1_JQ1 177 bp overlap
ChIP SUM159PT_shMYC_dox_48h GSE87418.BRD4.SUM159PT_shMYC_dox_48h 255 bp overlap
CARM1 1 dataset
ChIP MCF-7_E2 GSE124448.CARM1.MCF-7_E2 238 bp overlap
CDK7 2 datasets
ChIP Jurkat GSE83777.CDK7.Jurkat 220 bp overlap
ChIP Jurkat_THZ2102 GSE60027.CDK7.Jurkat_THZ2102 234 bp overlap
CDK8 1 dataset
ChIP leiomyoma_PT886 GSE128230.CDK8.leiomyoma_PT886 271 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 206 bp overlap
CREBBP 2 datasets
ChIP tonsil_GCBC_p5 GSE89688.CREBBP.tonsil_GCBC_p5 388 bp overlap
ChIP tonsil_GCBc_p4 GSE89688.CREBBP.tonsil_GCBc_p4 387 bp overlap
CTCF 14 datasets
ChIP DND-41 ENCFF913MRA 317 bp overlap
ChIP DND-41 ENCFF913MRA 182 bp overlap
ChIP DND41 ENCSR000AQU.CTCF.DND41 172 bp overlap
ChIP DOHH2 ENCFF637WNW 491 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 391 bp overlap
ChIP KARPAS422 ENCSR113REG.CTCF.KARPAS422 278 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 111 bp overlap
ChIP Loucy ENCFF359TVQ 465 bp overlap
ChIP Loucy ENCFF359TVQ 262 bp overlap
ChIP OCI-LY1 ENCFF455ESK 434 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 475 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 279 bp overlap
ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 329 bp overlap
ChIP THP-1_macrophage_PMA GSE96800.CTCF.THP-1_macrophage_PMA 290 bp overlap
EBF1 1 dataset
ChIP MUTUL GSE75503.EBF1.MUTUL 226 bp overlap
ERG 1 dataset
ChIP Jurkat GSE49091.ERG.Jurkat 385 bp overlap
ESR1 7 datasets
ChIP MCF-7 GSE103023.ESR1.MCF-7 181 bp overlap
ChIP MCF-7 GSE68355.ESR1.MCF-7 328 bp overlap
ChIP MCF-7_PROG GSE68355.ESR1.MCF-7_PROG 296 bp overlap
ChIP MCF-7_R5020 GSE68355.ESR1.MCF-7_R5020 264 bp overlap
ChIP MCF-7_RAD001 GSE103023.ESR1.MCF-7_RAD001 180 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.ESR1.MCF-7_parental_4-hydroxytamoxifen 170 bp overlap
ChIP breast-cancer_S440-2187 GSE128018.ESR1.breast-cancer_S440-2187 216 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 195 bp overlap
ETS1 2 datasets
ChIP CTV-1_DSG GSE128835.ETS1.CTV-1_DSG 408 bp overlap
ChIP CTV-1_DSG_SPI1-mut GSE128835.ETS1.CTV-1_DSG_SPI1-mut 294 bp overlap
FLI1 1 dataset
ChIP CTV-1_DSG GSE128835.FLI1.CTV-1_DSG 318 bp overlap
FOXA1 2 datasets
ChIP breast-cancer_Veh-2858 GSE128018.FOXA1.breast-cancer_Veh-2858 595 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 461 bp overlap
FOXA2 4 datasets
ChIP Caco-2 GSE66218.FOXA2.Caco-2 333 bp overlap
ChIP DE DE-FOXA2-1 485 bp overlap
ChIP DE DE-FOXA2-2 348 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 421 bp overlap
FOXO4 1 dataset
ChIP HepG2 ENCFF909ISL 89 bp overlap
GATA3 3 datasets
ChIP Jurkat GSE76181.GATA3.Jurkat 474 bp overlap
ChIP Jurkat GSE68976.GATA3.Jurkat 195 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 216 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 431 bp overlap
ChIP DE DE-GATA4-2 445 bp overlap
ChIP foregut GSE117136.GATA4.foregut 437 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 569 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 627 bp overlap
GATA6 12 datasets
ChIP AGS GSE51705.GATA6.AGS 137 bp overlap
ChIP DE DE-GATA6-1 511 bp overlap
ChIP DE DE-GATA6-2 560 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 557 bp overlap
ChIP HUG1N GSE51936.GATA6.HUG1N 205 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 285 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 353 bp overlap
ChIP foregut GSE117136.GATA6.foregut 513 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 391 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 528 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 419 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 566 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 301 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 276 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 201 bp overlap
HNF4A 2 datasets
ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 164 bp overlap
ChIP Caco-2_PROLIF GSE23436.HNF4A.Caco-2_PROLIF 227 bp overlap
KDM1A 3 datasets
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 335 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 88 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 398 bp overlap
LDB1 1 dataset
ChIP HEP GSE52637.LDB1.HEP 228 bp overlap
LMO1 1 dataset
ChIP Jurkat GSE94391.LMO1.Jurkat 457 bp overlap
LMO2 1 dataset
ChIP CCRF-CEM GSE33850.LMO2.CCRF-CEM 384 bp overlap
MED12 1 dataset
ChIP leiomyoma_PT886 GSE128230.MED12.leiomyoma_PT886 97 bp overlap
MYB 2 datasets
ChIP Jurkat GSE59657.MYB.Jurkat 508 bp overlap
ChIP PF-382 GSE94000.MYB.PF-382 484 bp overlap
MYCN 1 dataset
ChIP Kelly GSE94822.MYCN.Kelly 150 bp overlap
NCAPH2 1 dataset
ChIP IMR-90_FLAG_OIS GSE118494.NCAPH2.IMR-90_FLAG_OIS 197 bp overlap
NFATC1 1 dataset
ChIP HUVEC-C_VEGF GSE49428.NFATC1.HUVEC-C_VEGF 186 bp overlap
NOTCH1 1 dataset
ChIP HPBALL GSE39263.NOTCH1.HPBALL 627 bp overlap
NR4A1 1 dataset
ChIP Kasumi-1 GSE79491.NR4A1.Kasumi-1 177 bp overlap
NR5A2 1 dataset
ChIP A-549 ENCSR190GIW.NR5A2.A-549 341 bp overlap
NRIP1 1 dataset
ChIP MCF-7 ERP005838.NRIP1.MCF-7 132 bp overlap
ONECUT1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 524 bp overlap
PDX1 3 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 389 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 375 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 414 bp overlap
PGR 1 dataset
ChIP breast_tumor_Male_26 GSE104399.PGR.breast_tumor_Male_26 229 bp overlap
PHOX2B 2 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 310 bp overlap
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 164 bp overlap
POLR2A 12 datasets
ChIP esophagus muscularis mucosa ENCFF432ZCY 127 bp overlap
ChIP esophagus muscularis mucosa ENCFF432ZCY 478 bp overlap
ChIP esophagus muscularis mucosa ENCFF759BBR 377 bp overlap
ChIP gastroesophageal sphincter ENCFF043KAM 391 bp overlap
ChIP gastroesophageal sphincter ENCFF070PCA 288 bp overlap
ChIP gastroesophageal sphincter ENCFF238INU 366 bp overlap
ChIP gastroesophageal sphincter ENCFF461UHJ 355 bp overlap
ChIP gastroesophageal sphincter ENCFF461UHJ 421 bp overlap
ChIP stomach ENCFF607ZPU 325 bp overlap
ChIP stomach ENCFF607ZPU 325 bp overlap
ChIP stomach ENCFF820WZN 173 bp overlap
ChIP transverse colon ENCFF607LKE 309 bp overlap
PROX1 1 dataset
ChIP HepG2 ENCFF016ZJS 481 bp overlap
RAD21 3 datasets
ChIP MCF-7 ENCSR703TNG.RAD21.MCF-7 252 bp overlap
ChIP THP-1_PMA_Dex-0h GSE103477.RAD21.THP-1_PMA_Dex-0h 165 bp overlap
ChIP THP-1_PMA_IFNb-0h GSE103477.RAD21.THP-1_PMA_IFNb-0h 210 bp overlap
RBM22 2 datasets
ChIP HepG2 ENCFF292RVQ 423 bp overlap
ChIP HepG2 ENCFF292RVQ 407 bp overlap
REL 1 dataset
ChIP Ramos GSE139810.REL.Ramos 266 bp overlap
RUNX1 2 datasets
ChIP Jurkat GSE76181.RUNX1.Jurkat 340 bp overlap
ChIP Jurkat GSE68976.RUNX1.Jurkat 317 bp overlap
RXR 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.RXR.pancreatic-progenitor_PP1 289 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 503 bp overlap
SMAD3 1 dataset
ChIP NCI-H441 GSE51509.SMAD3.NCI-H441 271 bp overlap
SMARCA4 5 datasets
ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 388 bp overlap
ChIP CTV-1_FLAG GSE128835.SMARCA4.CTV-1_FLAG 340 bp overlap
ChIP CTV-1_FLAG_SPI1-mut GSE128835.SMARCA4.CTV-1_FLAG_SPI1-mut 320 bp overlap
ChIP CTV-1_delA GSE128835.SMARCA4.CTV-1_delA 345 bp overlap
ChIP CTV-1_delQ GSE128835.SMARCA4.CTV-1_delQ 390 bp overlap
SMC1A 1 dataset
ChIP A-549 GSE76893.SMC1A.A-549 172 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 317 bp overlap
SPI1 6 datasets
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 295 bp overlap
ChIP CTV-1_delA GSE128835.SPI1.CTV-1_delA 335 bp overlap
ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 402 bp overlap
ChIP CTV-1_delQA GSE128835.SPI1.CTV-1_delQA 339 bp overlap
ChIP DC_96h_donorM GSE128834.SPI1.DC_96h_donorM 187 bp overlap
ChIP OCI-Ly7 GSE69558.SPI1.OCI-Ly7 177 bp overlap
STAT3 1 dataset
ChIP OCI-Ly7 GSE50723.STAT3.OCI-Ly7 143 bp overlap
TAL1 2 datasets
ChIP PRIMA5 GSE33850.TAL1.PRIMA5 209 bp overlap
ChIP ProEs GSE59087.TAL1.ProEs 193 bp overlap
TCF12 1 dataset
ChIP Jurkat GSE29180.TCF12.Jurkat 75 bp overlap
TCF3 2 datasets
ChIP Ramos GSE139810.TCF3.Ramos 228 bp overlap
ChIP Ramos GSE139810.TCF3.Ramos 157 bp overlap
TEAD4 2 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 252 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 252 bp overlap
ZBTB42 1 dataset
ChIP HEK293 GSE76494.ZBTB42.HEK293 103 bp overlap
ZNF467 1 dataset
ChIP HEK293 GSE76494.ZNF467.HEK293 169 bp overlap