chr3 : 181,757,778 – 181,758,237

459 bp 81 TFs 0 linked genes

This 459 bp open chromatin element has no linked target genes and is bound by 81 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

81 transcription factors

ARID2 1 dataset

ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 449 bp overlap

BARHL1 1 dataset

Motif DE_12h DE_12h-BARHL1_MA0877.4 6 bp overlap

BARHL2 1 dataset

Motif DE_12h DE_12h-BARHL2_MA0635.2 6 bp overlap

BRD3 1 dataset

ChIP HEK293T GSE39579.BRD3.HEK293T 127 bp overlap

CDX1 1 dataset

Motif DE_12h DE_12h-CDX1_MA0878.3 10 bp overlap

CDX2 1 dataset

Motif DE_12h DE_12h-CDX2_MA0465.3 8 bp overlap

CDX4 1 dataset

Motif DE_12h DE_12h-CDX4_MA1473.2 9 bp overlap

CHD1 1 dataset

ChIP WA01 ENCSR000AQK.CHD1.WA01 191 bp overlap

CHD7 1 dataset

ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 321 bp overlap

Cebpa 1 dataset

ChIP BLaER1 ENCFF680YXW 249 bp overlap

DPF2 1 dataset

ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.DPF2.BIN-67_lentivirus-SMARCA4-K785R 216 bp overlap

DUXA 1 dataset

Motif DE_12h DE_12h-DUXA_MA0884.2 13 bp overlap

Dux 1 dataset

Motif DE_12h DE_12h-Dux_MA0611.3 11 bp overlap

ESR1 1 dataset

ChIP primary-endometrium-cancer_E1_DSG GSE114737.ESR1.primary-endometrium-cancer_E1_DSG 390 bp overlap

ETV5::HOXA2 1 dataset

Motif DE_12h DE_12h-ETV5HOXA2_MA1948.2 12 bp overlap

Elf5 1 dataset

Motif DE_12h DE_12h-Elf5_MA0136.4 8 bp overlap

FEZF1 2 datasets

ChIP HEK293 ENCFF528YED 166 bp overlap

ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 96 bp overlap

FLI1 1 dataset

ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 176 bp overlap

FOXA1 1 dataset

ChIP NCI-H3122 GSE39998.FOXA1.NCI-H3122 211 bp overlap

FOXD3 1 dataset

Motif DE_12h DE_12h-FOXD3_MA0041.3 14 bp overlap

Foxl2 1 dataset

Motif DE_12h DE_12h-Foxl2_MA1607.2 10 bp overlap

HOXB4 1 dataset

Motif DE_12h DE_12h-HOXB4_MA1499.2 6 bp overlap

HOXC4 1 dataset

Motif DE_12h DE_12h-HOXC4_MA1504.2 6 bp overlap

HOXD4 1 dataset

Motif DE_12h DE_12h-HOXD4_MA1507.2 6 bp overlap

Hoxa13 1 dataset

Motif DE_12h DE_12h-Hoxa13_MA0650.4 8 bp overlap

Hoxd13 1 dataset

Motif DE_12h DE_12h-Hoxd13_MA0909.4 7 bp overlap

IKZF2 2 datasets

Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap

IKZF3 1 dataset

ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 165 bp overlap

IRF2 1 dataset

Motif DE_12h DE_12h-IRF2_MA0051.2 16 bp overlap

MEIS1 1 dataset

Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap

MTA2 1 dataset

ChIP RH4 GSE155861.MTA2.RH4 333 bp overlap

Msgn1 1 dataset

Motif DE_12h DE_12h-Msgn1_MA1524.3 10 bp overlap

NANOG 5 datasets

ChIP HUES-8 GSE109524.NANOG.HUES-8 459 bp overlap

ChIP WA01 ERP004238.NANOG.WA01 259 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 291 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 459 bp overlap

ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 201 bp overlap

NKX2-1 1 dataset

ChIP NCI-H3122 GSE39998.NKX2-1.NCI-H3122 211 bp overlap

NKX6-3 1 dataset

Motif DE_12h DE_12h-NKX6-3_MA1530.2 8 bp overlap

NR2C2 1 dataset

Motif DE_12h DE_12h-NR2C2_MA0504.2 14 bp overlap

Npas4 1 dataset

Motif DE_12h DE_12h-Npas4_MA1995.2 7 bp overlap

OSR2 2 datasets

ChIP HEK293 ENCSR324LTM.OSR2.HEK293 172 bp overlap

ChIP HEK293 GSE76494.OSR2.HEK293 139 bp overlap

PBX2 1 dataset

Motif DE_12h DE_12h-PBX2_MA1113.3 9 bp overlap

POU4F1 1 dataset

Motif DE_12h DE_12h-POU4F1_MA0790.2 12 bp overlap

POU4F2 1 dataset

Motif DE_12h DE_12h-POU4F2_MA0683.2 15 bp overlap

POU4F3 1 dataset

Motif DE_12h DE_12h-POU4F3_MA0791.2 12 bp overlap

POU6F1 1 dataset

Motif DE_12h DE_12h-POU6F1_MA1549.2 7 bp overlap

POU6F2 1 dataset

Motif DE_12h DE_12h-POU6F2_MA0793.2 9 bp overlap

PPARA::RXRA 2 datasets

Motif DE_12h DE_12h-PPARARXRA_MA1148.2 17 bp overlap

PPARD 1 dataset

Motif DE_12h DE_12h-PPARD_MA1550.2 14 bp overlap

PPARG 1 dataset

Motif DE_12h DE_12h-PPARG_MA0066.2 19 bp overlap

PRDM1 1 dataset

ChIP HEK293 ENCFF302TBP 110 bp overlap

PRDM14 1 dataset

ChIP hESC GSE138674.PRDM14.hESC 105 bp overlap

PRDM6 2 datasets

ChIP HEK293 ENCFF283AJL 352 bp overlap

ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 358 bp overlap

PRDM9 1 dataset

Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap

Pparg::Rxra 1 dataset

Motif DE_12h DE_12h-PpargRxra_MA0065.3 13 bp overlap

RBBP4 1 dataset

ChIP RH5 GSE155861.RBBP4.RH5 173 bp overlap

RBPJ 2 datasets

Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap

ChIP GSC8-11_12d-das GSE74557.RBPJ.GSC8-11_12d-das 159 bp overlap

RXRB 1 dataset

Motif DE_12h DE_12h-RXRB_MA0855.1 14 bp overlap

SIX1 1 dataset

Motif DE_12h DE_12h-SIX1_MA1118.2 9 bp overlap

SIX2 2 datasets

ChIP HEK GSE73865.SIX2.HEK 160 bp overlap

ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 206 bp overlap

SMARCA4 7 datasets

ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 183 bp overlap

ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 441 bp overlap

ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 459 bp overlap

ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 377 bp overlap

ChIP NSC GSE125033.SMARCA4.NSC 430 bp overlap

ChIP hiPSC GSE124903.SMARCA4.hiPSC 459 bp overlap

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 459 bp overlap

SMARCB1 2 datasets

ChIP hiPSC GSE124903.SMARCB1.hiPSC 273 bp overlap

ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 160 bp overlap

SMARCC1 2 datasets

ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-K785R 434 bp overlap

ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 448 bp overlap

SOX15 1 dataset

Motif DE_12h DE_12h-SOX15_MA1152.2 7 bp overlap

SOX2 10 datasets

ChIP HNSC GSE69479.SOX2.HNSC 449 bp overlap

ChIP KYSE-70 GSE46837.SOX2.KYSE-70 185 bp overlap

ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 230 bp overlap

ChIP NPC GSE122631.SOX2.NPC 358 bp overlap

ChIP RENVM GSE49404.SOX2.RENVM 234 bp overlap

ChIP hiPSC GSE67282.SOX2.hiPSC 264 bp overlap

ChIP hiPSC GSE56567.SOX2.hiPSC 222 bp overlap

ChIP hiPSC_INHI GSE67282.SOX2.hiPSC_INHI 256 bp overlap

ChIP hiPSC_KDP53 GSE67282.SOX2.hiPSC_KDP53 220 bp overlap

ChIP hiPSC_KDP53_INHI GSE67282.SOX2.hiPSC_KDP53_INHI 237 bp overlap

SOX21 1 dataset

ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 339 bp overlap

SOX3 1 dataset

ChIP NPC GSE122631.SOX3.NPC 324 bp overlap

SP1 1 dataset

ChIP WA01 ENCSR000BIR.SP1.WA01 141 bp overlap

SS18 1 dataset

ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SS18.BIN-67_lentivirus-SMARCA4-K785R 285 bp overlap

Sox17 1 dataset

Motif DE_12h DE_12h-Sox17_MA0078.3 10 bp overlap

Sox6 1 dataset

Motif DE_12h DE_12h-Sox6_MA0515.1 10 bp overlap

Sox7 1 dataset

Motif DE_12h DE_12h-Sox7_MA2095.1 10 bp overlap

Stat2 1 dataset

Motif DE_12h DE_12h-Stat2_MA1623.2 10 bp overlap

Stat5a::Stat5b 1 dataset

Motif DE_12h DE_12h-Stat5aStat5b_MA0519.2 9 bp overlap

THRB 1 dataset

Motif DE_12h DE_12h-THRB_MA1574.2 13 bp overlap

ZEB2 1 dataset

ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 130 bp overlap

ZFP14 1 dataset

Motif DE_12h DE_12h-ZFP14_MA1972.1 15 bp overlap

ZKSCAN5 1 dataset

Motif DE_12h DE_12h-ZKSCAN5_MA1652.2 9 bp overlap

ZNF140 1 dataset

Motif DE_12h DE_12h-ZNF140_MA1589.2 19 bp overlap

ZNF335 3 datasets

ChIP HEK293 ENCFF784SLD 427 bp overlap

ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 424 bp overlap

ZNF354A 1 dataset

Motif DE_12h DE_12h-ZNF354A_MA1978.2 20 bp overlap

ZNF366 2 datasets

ChIP HEK293 ENCFF799ATK 206 bp overlap

ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 185 bp overlap

ZNF528 1 dataset

Motif DE_12h DE_12h-ZNF528_MA1597.1 17 bp overlap

ZNF660 1 dataset

ChIP HEK293 ENCSR283DOU.ZNF660.HEK293 170 bp overlap