chr3 : 146,510,973 – 146,512,267
1,294 bp 67 TFs 0 linked genes
This 1.3 kb open chromatin element has no linked target genes and is bound by 67 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:146,505,973 – 146,517,267
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
67 transcription factors
Source
Cell type
AR 18 datasets
ChIP 22Rv1_R1881 GSE80742.AR.22Rv1_R1881 302 bp overlap
ChIP VCaP GSE32892.AR.VCaP 159 bp overlap
ChIP VCaP_DHAT_18H GSE28950.AR.VCaP_DHAT_18H 203 bp overlap
ChIP VCaP_DHAT_2H GSE28950.AR.VCaP_DHAT_2H 392 bp overlap
ChIP VCaP_R1881 GSE32892.AR.VCaP_R1881 355 bp overlap
ChIP VCaP_R1881_10C30 GSE32892.AR.VCaP_R1881_10C30 129 bp overlap
ChIP VCaP_R1881_1C30 GSE32892.AR.VCaP_R1881_1C30 347 bp overlap
ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 203 bp overlap
ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 168 bp overlap
ChIP VCaP_shCt GSE110655.AR.VCaP_shCt 176 bp overlap
ChIP VCaP_shERG GSE110655.AR.VCaP_shERG 417 bp overlap
ChIP prostate GSE65478.AR.prostate 380 bp overlap
ChIP prostate-cancer_PDX_141 GSE130408.AR.prostate-cancer_PDX_141 408 bp overlap
ChIP prostate-cancer_PDX_189-4 GSE130408.AR.prostate-cancer_PDX_189-4 248 bp overlap
ChIP prostate-cancer_PDX_70 GSE130408.AR.prostate-cancer_PDX_70 345 bp overlap
ChIP prostate_1636_T GSE130408.AR.prostate_1636_T 364 bp overlap
ChIP prostate_2752_T GSE130408.AR.prostate_2752_T 170 bp overlap
ChIP prostate_P7_T GSE130408.AR.prostate_P7_T 385 bp overlap
ASH2L 3 datasets
ChIP Hep-G2 ENCSR508LMH.ASH2L.Hep-G2 288 bp overlap
ChIP VCaP GSE60841.ASH2L.VCaP 403 bp overlap
ChIP VCaP_R1881 GSE60841.ASH2L.VCaP_R1881 152 bp overlap
ATF3 2 datasets
ChIP liver ENCSR205FOW.ATF3.liver 501 bp overlap
ChIP liver ENCSR480LIS.ATF3.liver 277 bp overlap
BAF155 2 datasets
ChIP VCaP_shARID1A GSE110655.BAF155.VCaP_shARID1A 443 bp overlap
ChIP VCaP_shERG GSE110655.BAF155.VCaP_shERG 468 bp overlap
BCOR 1 dataset
ChIP VCaP_EtOH GSE122572.BCOR.VCaP_EtOH 275 bp overlap
BRD3 1 dataset
ChIP H-1_DE GSE126661.BRD3.H-1_DE 372 bp overlap
BRD4 1 dataset
ChIP SUM159PT_100nMtrametinib_24h GSE87418.BRD4.SUM159PT_100nMtrametinib_24h 556 bp overlap
CDX2 3 datasets
ChIP Caco-2_DIFF GSE23436.CDX2.Caco-2_DIFF 156 bp overlap
ChIP LS180_125 GSE31939.CDX2.LS180_125 194 bp overlap
ChIP adult-duodenal-cell GSE115314.CDX2.adult-duodenal-cell 403 bp overlap
CEBPA 1 dataset
ChIP liver ERP002306.CEBPA.liver 181 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 265 bp overlap
E2F8 1 dataset
ChIP K-562 ENCSR953DVM.E2F8.K-562 248 bp overlap
EGR1 2 datasets
ChIP liver ENCFF130MBW 401 bp overlap
ChIP liver ENCSR736BUG.EGR1.liver 293 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 203 bp overlap
ESR1 1 dataset
ChIP endometrioid-adenocarcinoma_tumor_2 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_2 400 bp overlap
FOXA1 13 datasets
ChIP 22Rv1_R1881 GSE80742.FOXA1.22Rv1_R1881 182 bp overlap
ChIP 22Rv1_i176m_CST GSE123618.FOXA1.22Rv1_i176m_CST 373 bp overlap
ChIP VCaP_ETOH24H GSE58428.FOXA1.VCaP_ETOH24H 302 bp overlap
ChIP liver ENCFF537QZV 421 bp overlap
ChIP liver ENCFF749ERP 345 bp overlap
ChIP liver ENCFF749ERP 345 bp overlap
ChIP liver ERP002306.FOXA1.liver 389 bp overlap
ChIP liver ENCSR324RCI.FOXA1.liver 364 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 801 bp overlap
ChIP prostate-cancer_PDX_189-3 GSE130408.FOXA1.prostate-cancer_PDX_189-3 150 bp overlap
ChIP prostate_2480 GSE130408.FOXA1.prostate_2480 179 bp overlap
ChIP prostate_2483_T GSE130408.FOXA1.prostate_2483_T 167 bp overlap
ChIP prostate_P7_T GSE130408.FOXA1.prostate_P7_T 381 bp overlap
FOXA2 10 datasets
ChIP DE DE-FOXA2-1 819 bp overlap
ChIP DE DE-FOXA2-2 923 bp overlap
ChIP PANC-1_HNF1B-OE GSE119930.FOXA2.PANC-1_HNF1B-OE 451 bp overlap
ChIP liver ENCFF877SFI 345 bp overlap
ChIP liver ENCFF888VJF 345 bp overlap
ChIP liver ENCSR080XEY.FOXA2.liver 439 bp overlap
ChIP liver ENCSR310NYI.FOXA2.liver 332 bp overlap
ChIP liver_CARN1618 ERP008682.FOXA2.liver_CARN1618 176 bp overlap
ChIP pancreas_CARN1618 ERP008682.FOXA2.pancreas_CARN1618 233 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 725 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 716 bp overlap
ChIP DE DE-GATA4-2 738 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 657 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 649 bp overlap
GATA6 11 datasets
ChIP DE DE-GATA6-1 630 bp overlap
ChIP DE DE-GATA6-2 865 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 265 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 268 bp overlap
ChIP ESO-26 GSE132680.GATA6.ESO-26 808 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 270 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 277 bp overlap
ChIP HUG1N GSE51936.GATA6.HUG1N 167 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 247 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 541 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 520 bp overlap
HNF1A 3 datasets
ChIP HEE_1 GSE76376.HNF1A.HEE_1 431 bp overlap
ChIP HEE_5 GSE76376.HNF1A.HEE_5 256 bp overlap
ChIP Hep-G2 ENCSR800QIT.HNF1A.Hep-G2 140 bp overlap
HNF1B 3 datasets
ChIP H9 ERP004206.HNF1B.H9 288 bp overlap
ChIP PANC-1_HNF1B-OE GSE119930.HNF1B.PANC-1_HNF1B-OE 600 bp overlap
ChIP foregut GSE117136.HNF1B.foregut 331 bp overlap
HNF4A 5 datasets
ChIP KATO-III GSE114018.HNF4A.KATO-III 177 bp overlap
ChIP liver ENCFF354NRH 183 bp overlap
ChIP liver ENCFF354NRH 405 bp overlap
ChIP liver ENCFF449HPV 148 bp overlap
ChIP liver ERP002306.HNF4A.liver 533 bp overlap
HOXB13 5 datasets
ChIP prostate-cancer_PDX_141 GSE130408.HOXB13.prostate-cancer_PDX_141 491 bp overlap
ChIP prostate-cancer_PDX_70 GSE130408.HOXB13.prostate-cancer_PDX_70 350 bp overlap
ChIP prostate_2480_T GSE130408.HOXB13.prostate_2480_T 502 bp overlap
ChIP prostate_2483_T GSE130408.HOXB13.prostate_2483_T 370 bp overlap
ChIP prostate_P7_T GSE130408.HOXB13.prostate_P7_T 478 bp overlap
Hmx1 1 dataset
Motif DE_60h DE_60h-Hmx1_MA0896.2 9 bp overlap
IFNA1 3 datasets
ChIP Huh-7_GFP GSE110511.IFNA1.Huh-7_GFP 485 bp overlap
ChIP Huh-7_GFP GSE110511.IFNA1.Huh-7_GFP 225 bp overlap
ChIP Huh-7_NS5 GSE110511.IFNA1.Huh-7_NS5 882 bp overlap
ISL2 1 dataset
Motif DE_60h DE_60h-ISL2_MA0914.2 6 bp overlap
JUND 3 datasets
ChIP liver ENCFF007WWT 421 bp overlap
ChIP liver ENCSR837GTK.JUND.liver 238 bp overlap
ChIP liver ENCSR196HGZ.JUND.liver 458 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 214 bp overlap
MAFB 1 dataset
ChIP islet ERP004003.MAFB.islet 362 bp overlap
MAX 3 datasets
ChIP liver ENCFF584QGB 457 bp overlap
ChIP liver ENCSR521IID.MAX.liver 415 bp overlap
ChIP liver ENCSR847DIT.MAX.liver 280 bp overlap
MED1 1 dataset
ChIP SGBS_TNF GSE64233.MED1.SGBS_TNF 280 bp overlap
MPHOSPH8 2 datasets
ChIP H9 GSE95374.MPHOSPH8.H9 183 bp overlap
ChIP H9 GSE95374.MPHOSPH8.H9 288 bp overlap
MYB 1 dataset
Motif DE_60h DE_60h-MYB_MA0100.4 6 bp overlap
NFKB1 1 dataset
ChIP MCF10A-Er-Src_TAM GSE115597.NFKB1.MCF10A-Er-Src_TAM 244 bp overlap
NKX2-3 1 dataset
Motif DE_60h DE_60h-NKX2-3_MA0672.2 8 bp overlap
NKX2-8 1 dataset
Motif DE_60h DE_60h-NKX2-8_MA0673.2 8 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 294 bp overlap
NR1I2 1 dataset
Motif DE_60h DE_60h-NR1I2_MA1533.2 15 bp overlap
NR2F2 2 datasets
ChIP MCF-7_Veh GSE132432.NR2F2.MCF-7_Veh 335 bp overlap
ChIP liver ENCSR168SMX.NR2F2.liver 379 bp overlap
NR3C1 2 datasets
ChIP BEAS-2B_TNF-DEX GSE125623.NR3C1.BEAS-2B_TNF-DEX 219 bp overlap
ChIP BEAS-2B_TNF-DEX_IA1 GSE125623.NR3C1.BEAS-2B_TNF-DEX_IA1 471 bp overlap
NR4A1 1 dataset
ChIP Kasumi-1 GSE79491.NR4A1.Kasumi-1 206 bp overlap
Nkx3-2 1 dataset
Motif DE_60h DE_60h-Nkx3-2_MA0122.4 10 bp overlap
ONECUT1 3 datasets
ChIP H9 ERP004206.ONECUT1.H9 303 bp overlap
ChIP liver ERP002306.ONECUT1.liver 314 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 513 bp overlap
PDX1 4 datasets
ChIP hESC GSE58685.PDX1.hESC 291 bp overlap
ChIP hiPSC GSE125768.PDX1.hiPSC 254 bp overlap
ChIP hiPSC GSE125768.PDX1.hiPSC 461 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 481 bp overlap
POLR2A 10 datasets
ChIP body of pancreas ENCFF501FEC 637 bp overlap
ChIP body of pancreas ENCFF501FEC 186 bp overlap
ChIP body of pancreas ENCFF675RCN 625 bp overlap
ChIP right lobe of liver ENCFF026NCK 416 bp overlap
ChIP sigmoid colon ENCFF725QFT 417 bp overlap
ChIP stomach ENCFF820WZN 90 bp overlap
ChIP transverse colon ENCFF193UMS 571 bp overlap
ChIP transverse colon ENCFF193UMS 571 bp overlap
ChIP transverse colon ENCFF607LKE 371 bp overlap
ChIP transverse colon ENCFF610RWV 425 bp overlap
RAD21 1 dataset
ChIP liver ENCFF485PAC 457 bp overlap
RELA 3 datasets
ChIP FaDu_LPS GSE132018.RELA.FaDu_LPS 489 bp overlap
ChIP HAEC_TNFa_4h GSE89970.RELA.HAEC_TNFa_4h 143 bp overlap
ChIP SGBS_TNF GSE64233.RELA.SGBS_TNF 334 bp overlap
REST 4 datasets
ChIP liver ENCFF240FWT 485 bp overlap
ChIP liver ENCFF577AZT 537 bp overlap
ChIP liver ENCSR867WPH.REST.liver 454 bp overlap
ChIP liver ENCSR893QWP.REST.liver 415 bp overlap
RREB1 1 dataset
Motif DE_60h DE_60h-RREB1_MA0073.2 19 bp overlap
RXRA 2 datasets
ChIP liver ENCFF077DAP 465 bp overlap
ChIP liver ENCFF807CIA 220 bp overlap
RXRA::VDR 1 dataset
Motif DE_60h DE_60h-RXRAVDR_MA0074.1 15 bp overlap
SKIL 1 dataset
ChIP GM12878 ENCSR212YKD.SKIL.GM12878 214 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 182 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 724 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 586 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 348 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 325 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 487 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 505 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 285 bp overlap
SMAD3 1 dataset
ChIP SUM159PT GSE130364.SMAD3.SUM159PT 431 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 168 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 338 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 230 bp overlap
SP1 2 datasets
ChIP liver ENCFF597LFJ 596 bp overlap
ChIP liver ENCFF769YSM 512 bp overlap
SUPT5H 1 dataset
ChIP MOLT-4_SNS GSE89384.SUPT5H.MOLT-4_SNS 103 bp overlap
TAF1 2 datasets
ChIP liver ENCFF610UQP 511 bp overlap
ChIP liver ENCSR016BMM.TAF1.liver 267 bp overlap
VDR 1 dataset
ChIP kidney-cortex GSE129585.VDR.kidney-cortex 501 bp overlap
YY1 6 datasets
ChIP liver ENCFF400MBC 591 bp overlap
ChIP liver ENCFF400MBC 591 bp overlap
ChIP liver ENCFF515BWJ 479 bp overlap
ChIP liver ENCFF515BWJ 565 bp overlap
ChIP liver ENCFF515BWJ 349 bp overlap
ChIP liver ENCSR994YLZ.YY1.liver 856 bp overlap
ZBTB33 4 datasets
ChIP liver ENCFF592BJA 521 bp overlap
ChIP liver ENCFF592BJA 521 bp overlap
ChIP liver ENCSR516HUP.ZBTB33.liver 523 bp overlap
ChIP liver ENCSR345YWJ.ZBTB33.liver 250 bp overlap
ZGPAT 1 dataset
ChIP Hep-G2 ENCSR704IGU.ZGPAT.Hep-G2 181 bp overlap
ZNF331 1 dataset
Motif DE_60h DE_60h-ZNF331_MA1726.2 10 bp overlap
ZNF382 1 dataset
Motif DE_60h DE_60h-ZNF382_MA1594.1 24 bp overlap
Huangfu Lab · Publications · Resources · Contact