chr3 : 114,022,190 114,022,922
732 bp 69 TFs 0 linked genes
This 732 bp open chromatin element has no linked target genes and is bound by 69 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:114,017,190 – 114,027,922
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
69 transcription factors
Source
Cell type
AFF4 2 datasets
ChIP HeLa_DOX GSE40632.AFF4.HeLa_DOX 195 bp overlap
ChIP HeLa_DOX_EGF GSE40632.AFF4.HeLa_DOX_EGF 193 bp overlap
AR 2 datasets
ChIP prostate GSE56288.AR.prostate 159 bp overlap
ChIP prostate_1798_T GSE130408.AR.prostate_1798_T 238 bp overlap
BCL6B 2 datasets
ChIP HEK293 ENCFF555YRB 365 bp overlap
ChIP HEK293 ENCSR673SGK.BCL6B.HEK293 304 bp overlap
BNC2 1 dataset
ChIP SK-N-SH ENCFF174EMC 382 bp overlap
BRD2 1 dataset
ChIP HCC1806_NTsiRNA GSE116879.BRD2.HCC1806_NTsiRNA 319 bp overlap
BRD4 1 dataset
ChIP HCC1806_100nMtrametinib300nMJQ1_24h GSE87418.BRD4.HCC1806_100nMtrametinib300nMJQ1_24h 340 bp overlap
CREB1 2 datasets
ChIP MCF-7 ENCFF867SAS 417 bp overlap
ChIP MCF-7 ENCSR897JAS.CREB1.MCF-7 275 bp overlap
CREB5 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR758GOA.CREB5.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 256 bp overlap
CREBBP 1 dataset
ChIP MCF-7 ERP000901.CREBBP.MCF-7 146 bp overlap
CTBP1 2 datasets
ChIP HEK293T ENCFF003PDY 331 bp overlap
ChIP HEK293T ENCSR237TFX.CTBP1.HEK293T 267 bp overlap
DPF2 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.DPF2.BIN-67_lentivirus-SMARCA4 403 bp overlap
DUX4 2 datasets
ChIP HEK293 GSE75791.DUX4.HEK293 235 bp overlap
ChIP WA01 GSE94322.DUX4.WA01 203 bp overlap
EBF1 2 datasets
ChIP MUTUL GSE75503.EBF1.MUTUL 200 bp overlap
ChIP NALM-6 GSE126300.EBF1.NALM-6 299 bp overlap
ELL2 1 dataset
ChIP HeLa_DOX GSE40632.ELL2.HeLa_DOX 110 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 353 bp overlap
EP300 2 datasets
ChIP neural ENCSR843ZUP.EP300.neural 430 bp overlap
ChIP neural cell ENCFF442QNK 287 bp overlap
ESR1 5 datasets
ChIP MCF-7 GSE76893.ESR1.MCF-7 293 bp overlap
ChIP MCF-7_E2-160min-ERalpha GSE94023.ESR1.MCF-7_E2-160min-ERalpha 150 bp overlap
ChIP MCF-7_E2-20min-ERalpha GSE94023.ESR1.MCF-7_E2-20min-ERalpha 155 bp overlap
ChIP MCF-7_E2-5min-ERalpha GSE94023.ESR1.MCF-7_E2-5min-ERalpha 202 bp overlap
ChIP MCF-7_E2-80min-ERalpha GSE94023.ESR1.MCF-7_E2-80min-ERalpha 187 bp overlap
FEZF1 2 datasets
ChIP HEK293 ENCFF528YED 421 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 293 bp overlap
FOSL2 1 dataset
ChIP hESC GSE69539.FOSL2.hESC 168 bp overlap
FOXA1 32 datasets
ChIP 22Rv1_CST_Crispr-70 GSE123618.FOXA1.22Rv1_CST_Crispr-70 216 bp overlap
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 384 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 402 bp overlap
ChIP HEK293_eGFP_TFS GSE123618.FOXA1.HEK293_eGFP_TFS 251 bp overlap
ChIP HEK293_i176m_TFS GSE123618.FOXA1.HEK293_i176m_TFS 330 bp overlap
ChIP HEK293_r261g_TFS GSE123618.FOXA1.HEK293_r261g_TFS 305 bp overlap
ChIP HEK293_v5_TFS GSE123618.FOXA1.HEK293_v5_TFS 408 bp overlap
ChIP LAPC-4_TFS_p358fs-V5 GSE123618.FOXA1.LAPC-4_TFS_p358fs-V5 197 bp overlap
ChIP LNCaP GSE56288.FOXA1.LNCaP 165 bp overlap
ChIP LNCaP_FENG_shFOXA1_Ethanol GSE128883.FOXA1.LNCaP_FENG_shFOXA1_Ethanol 411 bp overlap
ChIP LNCaP_GSK GSE148926.FOXA1.LNCaP_GSK 189 bp overlap
ChIP MCF-7 ENCFF465LTH 237 bp overlap
ChIP MCF-7 ENCSR126YEB.FOXA1.MCF-7 335 bp overlap
ChIP MCF-7 GSE81714.FOXA1.MCF-7 319 bp overlap
ChIP MCF-7 ERP001226.FOXA1.MCF-7 208 bp overlap
ChIP MCF-7_1117 GSE124667.FOXA1.MCF-7_1117 261 bp overlap
ChIP MCF-7_DEX GSE72249.FOXA1.MCF-7_DEX 298 bp overlap
ChIP MCF-7_E2 GSE72249.FOXA1.MCF-7_E2 244 bp overlap
ChIP MCF-7_E2 GSE23852.FOXA1.MCF-7_E2 206 bp overlap
ChIP MCF-7_ETOH GSE23852.FOXA1.MCF-7_ETOH 232 bp overlap
ChIP MCF-7_JC4691 GSE126004.FOXA1.MCF-7_JC4691 200 bp overlap
ChIP MCF-7_JC4693 GSE126004.FOXA1.MCF-7_JC4693 355 bp overlap
ChIP MCF-7_JC4695 GSE126004.FOXA1.MCF-7_JC4695 283 bp overlap
ChIP MCF-7_JC4697 GSE126004.FOXA1.MCF-7_JC4697 229 bp overlap
ChIP MCF-7_estrogen_ab2 GSE112969.FOXA1.MCF-7_estrogen_ab2 344 bp overlap
ChIP MCF-7_vehicle_ab1 GSE112969.FOXA1.MCF-7_vehicle_ab1 327 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 387 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 579 bp overlap
ChIP prostate_2030 GSE130408.FOXA1.prostate_2030 389 bp overlap
ChIP prostate_2030_T GSE130408.FOXA1.prostate_2030_T 225 bp overlap
ChIP prostate_2483 GSE130408.FOXA1.prostate_2483 153 bp overlap
ChIP prostate_P7_T GSE130408.FOXA1.prostate_P7_T 166 bp overlap
FOXA2 10 datasets
ChIP BJ1-hTERT_CDT1 GSE92491.FOXA2.BJ1-hTERT_CDT1 240 bp overlap
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 253 bp overlap
ChIP BJ1-hTERT_Mimo GSE92491.FOXA2.BJ1-hTERT_Mimo 288 bp overlap
ChIP BJ1-hTERT_MimoRelease GSE92491.FOXA2.BJ1-hTERT_MimoRelease 319 bp overlap
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 468 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 434 bp overlap
ChIP DE DE-FOXA2-1 732 bp overlap
ChIP DE DE-FOXA2-2 732 bp overlap
ChIP PANC-1_HNF1B-OE GSE119930.FOXA2.PANC-1_HNF1B-OE 374 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 517 bp overlap
GATA2 3 datasets
ChIP ESF GSE108408.GATA2.ESF 316 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 312 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P2 336 bp overlap
GATA3 4 datasets
ChIP MCF-7 ENCFF352QVM 320 bp overlap
ChIP MCF-7_E2 GSE60270.GATA3.MCF-7_E2 208 bp overlap
ChIP MCF-7_E2 GSE29073.GATA3.MCF-7_E2 127 bp overlap
ChIP MCF-7_sgScr GSE133072.GATA3.MCF-7_sgScr 300 bp overlap
GATA4 8 datasets
ChIP BJ1-hTERT GSE92491.GATA4.BJ1-hTERT 459 bp overlap
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 212 bp overlap
ChIP DE DE-GATA4-1 449 bp overlap
ChIP DE DE-GATA4-2 732 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 429 bp overlap
ChIP foregut GSE117136.GATA4.foregut 362 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 501 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 458 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 469 bp overlap
ChIP DE DE-GATA6-2 732 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 390 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 356 bp overlap
ChIP foregut GSE117136.GATA6.foregut 301 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 351 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 413 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 424 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 456 bp overlap
HOXB13 2 datasets
ChIP prostate-cancer_PDX_141 GSE130408.HOXB13.prostate-cancer_PDX_141 61 bp overlap
ChIP prostate_P19 GSE130408.HOXB13.prostate_P19 171 bp overlap
HOXB8 1 dataset
ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 320 bp overlap
ISL1 1 dataset
ChIP SK-N-SH ENCFF285GEQ 395 bp overlap
KDM1A 2 datasets
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 447 bp overlap
ChIP pancreatic-progenitor_PP2-KDM1A-inh GSE104840.KDM1A.pancreatic-progenitor_PP2-KDM1A-inh 286 bp overlap
KLF3 1 dataset
ChIP HEK293 GSE69739.KLF3.HEK293 212 bp overlap
KMT2A 1 dataset
ChIP L826 GSE83671.KMT2A.L826 257 bp overlap
KMT2C 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2C.BIN-67_lentivirus-SMARCA4 320 bp overlap
KMT2D 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2D.BIN-67_lentivirus-SMARCA4 361 bp overlap
MEIS1 2 datasets
ChIP CHRF28811 ERR063469.MEIS1.CHRF28811 192 bp overlap
ChIP HEK293 ENCFF821TIY 370 bp overlap
MEIS2 2 datasets
ChIP K-562 ENCSR851BNE.MEIS2.K-562 271 bp overlap
ChIP K562 ENCFF320GSD 154 bp overlap
NR3C1 1 dataset
ChIP A-549 ENCSR000BHF.NR3C1.A-549 129 bp overlap
ONECUT1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 400 bp overlap
PBX2 2 datasets
ChIP K-562 ENCSR263DFP.PBX2.K-562 341 bp overlap
ChIP K562 ENCFF286KMN 242 bp overlap
PDX1 4 datasets
ChIP hESC GSE58685.PDX1.hESC 206 bp overlap
ChIP hiPSC GSE125768.PDX1.hiPSC 390 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 430 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 489 bp overlap
PKNOX1 6 datasets
ChIP HEK293T ENCFF174WDB 314 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 380 bp overlap
ChIP K-562 ENCSR115SMW.PKNOX1.K-562 239 bp overlap
ChIP K562 ENCFF236IUS 166 bp overlap
ChIP MCF-7 ENCFF116OCS 137 bp overlap
ChIP MCF-7 ENCSR986XYK.PKNOX1.MCF-7 301 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 317 bp overlap
PRDM6 3 datasets
ChIP HEK293 ENCFF283AJL 202 bp overlap
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 338 bp overlap
ChIP HEK293 GSE76494.PRDM6.HEK293 298 bp overlap
RAD21 1 dataset
ChIP HAP1 GSE126634.RAD21.HAP1 194 bp overlap
RARA 4 datasets
ChIP hiPSC_D2 GSE132532.RARA.hiPSC_D2 439 bp overlap
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 501 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 508 bp overlap
ChIP hiPSC_D5 GSE132532.RARA.hiPSC_D5 380 bp overlap
REST 3 datasets
ChIP neural ENCSR000BTV.REST.neural 246 bp overlap
ChIP neural ENCSR000BTV.REST.neural 146 bp overlap
ChIP neural cell ENCFF882LXX 418 bp overlap
RUNX1 2 datasets
ChIP BCP-ALL_patient1 GSE109377.RUNX1.BCP-ALL_patient1 359 bp overlap
ChIP NALM-6 GSE126300.RUNX1.NALM-6 231 bp overlap
SIN3A 2 datasets
ChIP MCF-7 ENCFF521RDC 477 bp overlap
ChIP MCF-7 ENCSR000BUM.SIN3A.MCF-7 253 bp overlap
SIX2 2 datasets
ChIP HEK GSE73865.SIX2.HEK 383 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 373 bp overlap
SMARCA4 9 datasets
ChIP A-549_AG15677 GSE132290.SMARCA4.A-549_AG15677 76 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 546 bp overlap
ChIP BT-16_Dox GSE71504.SMARCA4.BT-16_Dox 203 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 333 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 197 bp overlap
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 581 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 627 bp overlap
ChIP TTC-1240_SMARCB1-FL GSE124903.SMARCA4.TTC-1240_SMARCB1-FL 485 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 534 bp overlap
SMARCB1 4 datasets
ChIP TTC-1240 GSE124903.SMARCB1.TTC-1240 312 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCB1.TTC-1240_R377H 289 bp overlap
ChIP TTC-1240_SMARCB1-FL GSE124903.SMARCB1.TTC-1240_SMARCB1-FL 357 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCB1.TTC-1240_delC 455 bp overlap
SMARCC1 7 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4 436 bp overlap
ChIP G-401_Dox GSE71504.SMARCC1.G-401_Dox 241 bp overlap
ChIP TTC-1240 GSE124903.SMARCC1.TTC-1240 456 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCC1.TTC-1240_R377H 506 bp overlap
ChIP TTC-1240_SMARCB1-FL GSE124903.SMARCC1.TTC-1240_SMARCB1-FL 362 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCC1.TTC-1240_delC 527 bp overlap
ChIP TTC-549_Dox GSE71504.SMARCC1.TTC-549_Dox 411 bp overlap
SP5_Zebrafish 2 datasets
ChIP HEK293_Zebrafish_dDBD GSE121316.SP5_Zebrafish.HEK293_Zebrafish_dDBD 276 bp overlap
ChIP HEK293_dDBD GSE110277.SP5_Zebrafish.HEK293_dDBD 173 bp overlap
SP7 2 datasets
ChIP HEK293 ENCFF733RBE 335 bp overlap
ChIP HEK293 ENCSR468IJT.SP7.HEK293 394 bp overlap
SPDEF 1 dataset
ChIP MCF-7 ENCSR042GSX.SPDEF.MCF-7 221 bp overlap
SPI1 3 datasets
ChIP CD34_FETAL GSE70660.SPI1.CD34_FETAL 173 bp overlap
ChIP NB4 GSE128834.SPI1.NB4 166 bp overlap
ChIP RS4-11_DEX GSE71616.SPI1.RS4-11_DEX 195 bp overlap
SS18 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 505 bp overlap
STAT3 1 dataset
ChIP MCF-7_jc5836 GSE126004.STAT3.MCF-7_jc5836 238 bp overlap
TEAD1 3 datasets
ChIP HUCCT1 GSE68296.TEAD1.HUCCT1 160 bp overlap
ChIP MSTO GSE68170.TEAD1.MSTO 311 bp overlap
ChIP pancreas_12D ERP008682.TEAD1.pancreas_12D 351 bp overlap
TEAD4 2 datasets
ChIP HEK293_siCtrl GSE130135.TEAD4.HEK293_siCtrl 217 bp overlap
ChIP MCF-7_BLRP_WT_Veh GSE125594.TEAD4.MCF-7_BLRP_WT_Veh 242 bp overlap
TWIST1 2 datasets
ChIP SHEP-21N GSE80151.TWIST1.SHEP-21N 209 bp overlap
ChIP SHEP-21N_24h GSE80151.TWIST1.SHEP-21N_24h 151 bp overlap
YY1 1 dataset
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 513 bp overlap
YY1AP1 1 dataset
ChIP HEK293_siCtrl GSE130135.YY1AP1.HEK293_siCtrl 209 bp overlap
ZNF189 2 datasets
ChIP HEK293 ENCFF638TIB 384 bp overlap
ChIP HEK293 ENCSR163RYW.ZNF189.HEK293 263 bp overlap
ZNF366 2 datasets
ChIP HEK293 ENCFF799ATK 511 bp overlap
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 413 bp overlap
ZNF843 2 datasets
ChIP HEK293 ENCFF241QRH 374 bp overlap
ChIP HEK293 ENCSR502KPJ.ZNF843.HEK293 277 bp overlap