chr3 : 65,971,459 65,971,848
389 bp 74 TFs 0 linked genes
This 389 bp open chromatin element has no linked target genes and is bound by 74 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:65,966,459 – 65,976,848
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
74 transcription factors
Source
Cell type
AR 3 datasets
ChIP prostate-cancer_PDX_35 GSE130408.AR.prostate-cancer_PDX_35 301 bp overlap
ChIP prostate-cancer_PDX_81 GSE130408.AR.prostate-cancer_PDX_81 74 bp overlap
ChIP prostate-cancer_PDX_81 GSE130408.AR.prostate-cancer_PDX_81 80 bp overlap
ATF3 1 dataset
ChIP HCT-116_CAMP GSE74355.ATF3.HCT-116_CAMP 102 bp overlap
BRD2 1 dataset
ChIP SK-MEL-147_JQ1 GSE94488.BRD2.SK-MEL-147_JQ1 186 bp overlap
BRD4 5 datasets
ChIP CHL-1 GSE95585.BRD4.CHL-1 225 bp overlap
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 111 bp overlap
ChIP RH4 GSE83726.BRD4.RH4 389 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 341 bp overlap
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 389 bp overlap
CDK8 1 dataset
ChIP HCT-116_NOMO GSE38258.CDK8.HCT-116_NOMO 341 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 168 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 272 bp overlap
CTCF 3 datasets
Motif DE_12h DE_12h-CTCF_MA0139.2 15 bp overlap
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 350 bp overlap
E2F1 1 dataset
ChIP MDA-MB-231 GSE95303.E2F1.MDA-MB-231 228 bp overlap
ERG 2 datasets
ChIP aortic-endothelial-cell_D14 GSE139377.ERG.aortic-endothelial-cell_D14 209 bp overlap
ChIP aortic-endothelial-cell_D5 GSE139377.ERG.aortic-endothelial-cell_D5 147 bp overlap
ETV1 3 datasets
Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap
Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap
ChIP MDA-Pca-2b GSE106624.ETV1.MDA-Pca-2b 72 bp overlap
FLI1 7 datasets
ChIP A-673 GSE99959.FLI1.A-673 281 bp overlap
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 336 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 298 bp overlap
ChIP A-673_D11 GSE129155.FLI1.A-673_D11 295 bp overlap
ChIP A-673_D14 GSE129155.FLI1.A-673_D14 389 bp overlap
ChIP A-673_D17 GSE129155.FLI1.A-673_D17 375 bp overlap
ChIP HUVEC-C GSE109695.FLI1.HUVEC-C 185 bp overlap
FOXA1 1 dataset
ChIP prostate_P13_T GSE130408.FOXA1.prostate_P13_T 166 bp overlap
FOXO1-PAX3 2 datasets
ChIP RH4_DMSO-6H GSE116344.FOXO1-PAX3.RH4_DMSO-6H 275 bp overlap
ChIP RH4_Entinostat-6H GSE116344.FOXO1-PAX3.RH4_Entinostat-6H 171 bp overlap
GABPA 1 dataset
ChIP VCaP_ETOH GSE49091.GABPA.VCaP_ETOH 144 bp overlap
GATA6 6 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 389 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 378 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 380 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 389 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 389 bp overlap
ChIP PATU8988 GSE47535.GATA6.PATU8988 182 bp overlap
HDAC2 2 datasets
ChIP RH4_DMSO-6H GSE116344.HDAC2.RH4_DMSO-6H 389 bp overlap
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 389 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 302 bp overlap
HMGB2 1 dataset
ChIP HUVEC-C GSE98245.HMGB2.HUVEC-C 190 bp overlap
HNF4A 4 datasets
ChIP IM95 GSE114018.HNF4A.IM95 210 bp overlap
ChIP KATO-III GSE114018.HNF4A.KATO-III 228 bp overlap
ChIP LoVo_PHASES GSE51290.HNF4A.LoVo_PHASES 229 bp overlap
ChIP gastric-epithelial-cell_OE GSE114018.HNF4A.gastric-epithelial-cell_OE 199 bp overlap
HOXB13 1 dataset
ChIP prostate_P25 GSE130408.HOXB13.prostate_P25 168 bp overlap
IKZF2 2 datasets
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Ikzf3 2 datasets
Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap
Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 339 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 279 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 368 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 364 bp overlap
MED1 2 datasets
ChIP HCT-116 GSE121798.MED1.HCT-116 321 bp overlap
ChIP RH4 GSE83726.MED1.RH4 360 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 348 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 389 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 316 bp overlap
MYCN 1 dataset
ChIP RH4 GSE83726.MYCN.RH4 350 bp overlap
MYF5 1 dataset
ChIP Rh18 GSE84628.MYF5.Rh18 176 bp overlap
MYOD1 7 datasets
ChIP RD GSE137168.MYOD1.RD 185 bp overlap
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 313 bp overlap
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 325 bp overlap
ChIP RH4 GSE83726.MYOD1.RH4 389 bp overlap
ChIP SMS-CTR GSE137168.MYOD1.SMS-CTR 216 bp overlap
ChIP myoblast GSE50413.MYOD1.myoblast 188 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 185 bp overlap
MYOG 2 datasets
ChIP RH30_DMSO GSE85169.MYOG.RH30_DMSO 182 bp overlap
ChIP RH4 GSE83726.MYOG.RH4 389 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 205 bp overlap
NKX2-1 1 dataset
ChIP NCI-H2087 GSE39998.NKX2-1.NCI-H2087 304 bp overlap
OSR1 1 dataset
Motif DE_12h DE_12h-OSR1_MA1542.2 8 bp overlap
OSR2 4 datasets
Motif DE_12h DE_12h-OSR2_MA1646.2 8 bp overlap
ChIP HEK293 ENCFF875BDB 206 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 367 bp overlap
ChIP HEK293 GSE76494.OSR2.HEK293 279 bp overlap
PAF1 1 dataset
ChIP HCT-116_ab20662 GSE97527.PAF1.HCT-116_ab20662 286 bp overlap
PAX3-FOXO1 2 datasets
ChIP RH3 GSE83726.PAX3-FOXO1.RH3 306 bp overlap
ChIP RH4 GSE140115.PAX3-FOXO1.RH4 328 bp overlap
PHIP 2 datasets
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 338 bp overlap
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 389 bp overlap
POLR2A 1 dataset
ChIP prostate gland ENCFF881OMH 369 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 138 bp overlap
RAD21 1 dataset
ChIP RH4 GSE83726.RAD21.RH4 254 bp overlap
RBBP4 1 dataset
ChIP SCMC GSE155861.RBBP4.SCMC 389 bp overlap
RELA 2 datasets
ChIP aortic-endothelial-cell_IL1B_D2 GSE139377.RELA.aortic-endothelial-cell_IL1B_D2 227 bp overlap
ChIP aortic-endothelial-cell_IL1B_D9 GSE139377.RELA.aortic-endothelial-cell_IL1B_D9 207 bp overlap
SMAD2 1 dataset
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 311 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 389 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 389 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 369 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 348 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 346 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 136 bp overlap
SMARCC1 2 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 311 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 320 bp overlap
SMC1 1 dataset
ChIP HCAEC GSE101921.SMC1.HCAEC 247 bp overlap
SOX10 1 dataset
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 194 bp overlap
TCF7L2 3 datasets
ChIP HCT-116 ENCSR000EUV.TCF7L2.HCT-116 314 bp overlap
ChIP HCT116 ENCFF038POZ 366 bp overlap
ChIP LNCaP GSE51621.TCF7L2.LNCaP 258 bp overlap
TP53 1 dataset
ChIP MDA-MB-231 GSE95303.TP53.MDA-MB-231 294 bp overlap
TRIM28 1 dataset
ChIP HEK293 ENCFF582MWI 389 bp overlap
YY1 2 datasets
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 184 bp overlap
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 389 bp overlap
ZBTB42 1 dataset
ChIP HEK293 GSE76494.ZBTB42.HEK293 156 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 224 bp overlap
ZIC1 1 dataset
Motif DE_12h DE_12h-ZIC1_MA0696.1 14 bp overlap
ZIC2 1 dataset
ChIP HCT-116_WT GSE127960.ZIC2.HCT-116_WT 326 bp overlap
ZIC4 1 dataset
Motif DE_12h DE_12h-ZIC4_MA0751.2 14 bp overlap
ZIC5 6 datasets
Motif DE_12h DE_12h-ZIC5_MA1584.2 15 bp overlap
ChIP HCT-116_C18-CT289 GSE127960.ZIC5.HCT-116_C18-CT289 232 bp overlap
ChIP HCT-116_WT-CT289 GSE127960.ZIC5.HCT-116_WT-CT289 219 bp overlap
ChIP HCT-116_WT-FL290 GSE127960.ZIC5.HCT-116_WT-FL290 216 bp overlap
ChIP HCT-116_sc1 GSE127960.ZIC5.HCT-116_sc1 218 bp overlap
ChIP HCT-116_sc2 GSE127960.ZIC5.HCT-116_sc2 262 bp overlap
ZMYND8 1 dataset
ChIP MDA-MB-231 GSE108833.ZMYND8.MDA-MB-231 196 bp overlap
ZNF175 1 dataset
Motif DE_12h DE_12h-ZNF175_MA2332.1 9 bp overlap
ZSCAN16 1 dataset
Motif DE_12h DE_12h-ZSCAN16_MA2100.1 18 bp overlap
Zfp335 1 dataset
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Zic2 1 dataset
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap