chr3 : 55,587,691 – 55,587,957
266 bp 58 TFs 0 linked genes
This 266 bp open chromatin element has no linked target genes and is bound by 58 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:55,582,691 – 55,592,957
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
58 transcription factors
Source
Cell type
ATF3 3 datasets
ChIP liver ENCFF375GID 137 bp overlap
ChIP liver ENCFF375GID 266 bp overlap
ChIP liver ENCSR480LIS.ATF3.liver 158 bp overlap
BRD4 3 datasets
ChIP HCC1395 GSE63581.BRD4.HCC1395 266 bp overlap
ChIP HeLa_JQ1 GSE151038.BRD4.HeLa_JQ1 250 bp overlap
ChIP NMC24335 GSE96775.BRD4.NMC24335 266 bp overlap
CEBPA 1 dataset
ChIP liver ERP002306.CEBPA.liver 90 bp overlap
CEBPB 2 datasets
ChIP HeLa-S3 ENCFF722WEG 111 bp overlap
ChIP monocyte GSE98367.CEBPB.monocyte 54 bp overlap
CTBP1 2 datasets
ChIP HEK293T ENCFF003PDY 186 bp overlap
ChIP HEK293T ENCSR237TFX.CTBP1.HEK293T 135 bp overlap
CTCF 1 dataset
ChIP H1 ENCFF414GZI 137 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 209 bp overlap
EBF1 2 datasets
ChIP GM12878 ENCFF167CZS 50 bp overlap
ChIP MUTUL GSE75503.EBF1.MUTUL 73 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 229 bp overlap
EP300 1 dataset
ChIP HeLa-S3 ENCSR000ECV.EP300.HeLa-S3 66 bp overlap
ESR2 1 dataset
ChIP MCF-7_C412_E2 GSE48096.ESR2.MCF-7_C412_E2 112 bp overlap
ESRRA 1 dataset
ChIP SK-BR-3_EGF GSE81651.ESRRA.SK-BR-3_EGF 91 bp overlap
FLI1 1 dataset
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 67 bp overlap
FOXA1 3 datasets
ChIP liver ENCFF749ERP 152 bp overlap
ChIP liver ENCSR735KEY.FOXA1.liver 53 bp overlap
ChIP liver ERP002306.FOXA1.liver 99 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 266 bp overlap
ChIP DE DE-FOXA2-2 244 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 266 bp overlap
ChIP DE DE-GATA4-2 266 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 266 bp overlap
ChIP DE DE-GATA6-2 266 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 266 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 266 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 266 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 266 bp overlap
HNF4A 3 datasets
ChIP liver ENCFF354NRH 141 bp overlap
ChIP liver ENCFF449HPV 168 bp overlap
ChIP liver ERP002306.HNF4A.liver 151 bp overlap
HNF4G 1 dataset
ChIP liver ENCSR297GII.HNF4G.liver 81 bp overlap
IKZF3 1 dataset
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 241 bp overlap
JUND 1 dataset
ChIP liver ENCSR837GTK.JUND.liver 77 bp overlap
KLF5 2 datasets
ChIP HEK293 GSE88976.KLF5.HEK293 255 bp overlap
ChIP HEK293_D418N GSE88976.KLF5.HEK293_D418N 266 bp overlap
MAX 2 datasets
ChIP HeLa-S3 ENCSR000EZF.MAX.HeLa-S3 98 bp overlap
ChIP liver ENCSR521IID.MAX.liver 67 bp overlap
MED1 4 datasets
ChIP U-87MG GSE36354.MED1.U-87MG 60 bp overlap
ChIP hMSC-TERT4_4h GSE104537.MED1.hMSC-TERT4_4h 173 bp overlap
ChIP hMSC-TERT4_D3 GSE104537.MED1.hMSC-TERT4_D3 139 bp overlap
ChIP hMSC-TERT4_adipocyte-D1 GSE113253.MED1.hMSC-TERT4_adipocyte-D1 92 bp overlap
MYC 1 dataset
ChIP HeLa-S3 ENCSR000EZD.MYC.HeLa-S3 56 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 222 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 177 bp overlap
NFE2L2 1 dataset
ChIP IMR-90 ENCFF059WEE 59 bp overlap
NR3C1 1 dataset
ChIP SUM159PT GSE152203.NR3C1.SUM159PT 128 bp overlap
NUTM1 2 datasets
ChIP NMC24335 GSE96775.NUTM1.NMC24335 207 bp overlap
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 266 bp overlap
OSR2 1 dataset
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 193 bp overlap
PKNOX1 1 dataset
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 234 bp overlap
PRDM6 3 datasets
ChIP HEK293 ENCFF283AJL 146 bp overlap
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 198 bp overlap
ChIP HEK293 GSE76494.PRDM6.HEK293 99 bp overlap
RAD21 3 datasets
ChIP HeLa-S3_CTCF-s-OE GSE108869.RAD21.HeLa-S3_CTCF-s-OE 67 bp overlap
ChIP liver ENCFF485PAC 198 bp overlap
ChIP liver ENCFF522JHE 204 bp overlap
REST 1 dataset
ChIP liver ENCSR867WPH.REST.liver 75 bp overlap
RXRA 2 datasets
ChIP liver ENCFF077DAP 188 bp overlap
ChIP liver ENCFF807CIA 220 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 257 bp overlap
SMARCA4 1 dataset
ChIP SYO-1 GSE108025.SMARCA4.SYO-1 116 bp overlap
SMARCC1 2 datasets
ChIP SYO-1_shCt GSE139053.SMARCC1.SYO-1_shCt 155 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SMARCC1.SYO-1_shRING1A-B 238 bp overlap
SMC3 3 datasets
ChIP HEK293T_CRISPR GSE122299.SMC3.HEK293T_CRISPR 180 bp overlap
ChIP HeLa GSE126990.SMC3.HeLa 57 bp overlap
ChIP HeLa-Kyoto GSE102884.SMC3.HeLa-Kyoto 57 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 220 bp overlap
SP1 2 datasets
ChIP liver ENCFF597LFJ 108 bp overlap
ChIP liver ENCFF769YSM 95 bp overlap
SREBP2 1 dataset
ChIP monocyte_TNF GSE129202.SREBP2.monocyte_TNF 128 bp overlap
SS18 1 dataset
ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 266 bp overlap
STAG1 2 datasets
ChIP HeLa GSE126990.STAG1.HeLa 144 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 144 bp overlap
STAT3 2 datasets
ChIP SUM159PT GSE152203.STAT3.SUM159PT 87 bp overlap
ChIP monocyte_LPS GSE120943.STAT3.monocyte_LPS 77 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 244 bp overlap
TRIM28 5 datasets
ChIP HEK293 ENCFF265CEM 266 bp overlap
ChIP HEK293 ENCFF265CEM 266 bp overlap
ChIP HEK293 ENCFF582MWI 266 bp overlap
ChIP HEK293 ENCSR618HNF.TRIM28.HEK293 148 bp overlap
ChIP U2OS ENCSR000EYC.TRIM28.U2OS 149 bp overlap
UBN1 1 dataset
ChIP HeLa GSE45024.UBN1.HeLa 69 bp overlap
YY1 2 datasets
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 266 bp overlap
ChIP liver ENCFF400MBC 266 bp overlap
ZBTB33 2 datasets
ChIP liver ENCFF592BJA 225 bp overlap
ChIP liver ENCSR516HUP.ZBTB33.liver 99 bp overlap
ZBTB44 2 datasets
ChIP HEK293 ENCFF560VPN 116 bp overlap
ChIP HEK293 ENCSR076STQ.ZBTB44.HEK293 181 bp overlap
ZIC2 2 datasets
ChIP HEK293 ENCFF033NQQ 220 bp overlap
ChIP HEK293 ENCFF033NQQ 141 bp overlap
ZNF133 2 datasets
ChIP HEK293 ENCSR283MWQ.ZNF133.HEK293 225 bp overlap
ChIP HEK293T GSE78099.ZNF133.HEK293T 122 bp overlap
ZNF18 1 dataset
ChIP HEK293 ENCSR977HTH.ZNF18.HEK293 103 bp overlap
ZNF35 1 dataset
ChIP HEK293 GSE76494.ZNF35.HEK293 101 bp overlap
ZNF561 1 dataset
ChIP HEK293 ENCSR125ULS.ZNF561.HEK293 240 bp overlap
ZNF695 1 dataset
ChIP HEK293T GSE78099.ZNF695.HEK293T 56 bp overlap
ZSCAN5C 2 datasets
ChIP HEK293 ENCFF343DTU 137 bp overlap
ChIP HEK293 ENCSR731AGO.ZSCAN5C.HEK293 173 bp overlap
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