chr3 : 22,971,273 22,972,054
781 bp 108 TFs 0 linked genes
This 781 bp open chromatin element has no linked target genes and is bound by 108 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:22,966,273 – 22,977,054
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
108 transcription factors
Source
Cell type
ALX3 1 dataset
Motif DE_60h DE_60h-ALX3_MA0634.2 6 bp overlap
AR 1 dataset
ChIP LNCaP GSE80256.AR.LNCaP 194 bp overlap
ARGFX 1 dataset
Motif DE_60h DE_60h-ARGFX_MA1463.2 8 bp overlap
Arid3a 1 dataset
Motif DE_60h DE_60h-Arid3a_MA0151.1 6 bp overlap
BCL6 1 dataset
ChIP OCI-Ly1_UV GSE103125.BCL6.OCI-Ly1_UV 352 bp overlap
BRD4 1 dataset
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 161 bp overlap
CRX 3 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 477 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 393 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 497 bp overlap
CTCF 5 datasets
ChIP anterior-temporal-cortex_adult GSE116825.CTCF.anterior-temporal-cortex_adult 152 bp overlap
ChIP endodermal cell ENCFF471YCZ 436 bp overlap
ChIP retina_Hu22 GSE137311.CTCF.retina_Hu22 236 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 443 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 588 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 319 bp overlap
DRGX 1 dataset
Motif DE_60h DE_60h-DRGX_MA1481.2 6 bp overlap
DUX4 1 dataset
Motif DE_60h DE_60h-DUX4_MA0468.1 11 bp overlap
DUXA 1 dataset
Motif DE_60h DE_60h-DUXA_MA0884.2 13 bp overlap
E2F6 1 dataset
Motif DE_60h DE_60h-E2F6_MA0471.3 8 bp overlap
E2F7 1 dataset
Motif DE_60h DE_60h-E2F7_MA0758.1 14 bp overlap
ELF4 2 datasets
ChIP K-562 ENCSR638QHV.ELF4.K-562 356 bp overlap
ChIP K562 ENCFF454SBL 389 bp overlap
EMX1 1 dataset
Motif DE_60h DE_60h-EMX1_MA0612.3 6 bp overlap
EMX2 1 dataset
Motif DE_60h DE_60h-EMX2_MA0886.2 6 bp overlap
EN1 1 dataset
Motif DE_60h DE_60h-EN1_MA0027.3 6 bp overlap
EN2 1 dataset
Motif DE_60h DE_60h-EN2_MA0642.3 7 bp overlap
ERG 2 datasets
ChIP ME-1 GSE46044.ERG.ME-1 212 bp overlap
ChIP TSU-1621MT_ATRA GSE60477.ERG.TSU-1621MT_ATRA 244 bp overlap
ESX1 1 dataset
Motif DE_60h DE_60h-ESX1_MA0644.3 7 bp overlap
EVX1 1 dataset
Motif DE_60h DE_60h-EVX1_MA0887.2 6 bp overlap
EVX2 1 dataset
Motif DE_60h DE_60h-EVX2_MA0888.2 6 bp overlap
EZH2 1 dataset
ChIP neural progenitor cell ENCFF018MKA 781 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 384 bp overlap
ChIP DE DE-FOXA2-2 374 bp overlap
GATA1 3 datasets
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 204 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 231 bp overlap
ChIP erythroid-progenitor GSE124163.GATA1.erythroid-progenitor 152 bp overlap
GATA2 10 datasets
Motif DE_60h DE_60h-GATA2_MA0036.4 7 bp overlap
ChIP LNCaP GSE38391.GATA2.LNCaP 206 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 206 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 180 bp overlap
ChIP ME-1 GSE46044.GATA2.ME-1 248 bp overlap
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 242 bp overlap
ChIP SH-SY5Y ENCFF485YIB 405 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 235 bp overlap
ChIP SKH1_RUNX1-EVI1_KD GSE87283.GATA2.SKH1_RUNX1-EVI1_KD 172 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 286 bp overlap
GATA3 11 datasets
ChIP A1A3_Brg1KD_EtOH GSE112491.GATA3.A1A3_Brg1KD_EtOH 214 bp overlap
ChIP BE2C GSE65664.GATA3.BE2C 251 bp overlap
ChIP Jurkat GSE76181.GATA3.Jurkat 343 bp overlap
ChIP Jurkat GSE29180.GATA3.Jurkat 439 bp overlap
ChIP Jurkat GSE120063.GATA3.Jurkat 404 bp overlap
ChIP Jurkat GSE68976.GATA3.Jurkat 272 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 236 bp overlap
ChIP MCF-7 GSE51274.GATA3.MCF-7 252 bp overlap
ChIP T-47D GSE51274.GATA3.T-47D 267 bp overlap
ChIP T-47D_sc GSE122847.GATA3.T-47D_sc 178 bp overlap
ChIP thymocyte GSE71751.GATA3.thymocyte 211 bp overlap
GATA3_Nter 2 datasets
ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 248 bp overlap
ChIP T-47D_flp-ctrl GSE99479.GATA3_Nter.T-47D_flp-ctrl 248 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 447 bp overlap
ChIP DE DE-GATA4-2 609 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 431 bp overlap
ChIP DE DE-GATA6-2 634 bp overlap
Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 273 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 285 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 410 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 323 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 422 bp overlap
GBX1 1 dataset
Motif DE_60h DE_60h-GBX1_MA0889.2 7 bp overlap
GFI1B 1 dataset
ChIP K-562_Wnt GSE117944.GFI1B.K-562_Wnt 361 bp overlap
GSX1 1 dataset
Motif DE_60h DE_60h-GSX1_MA0892.2 6 bp overlap
GSX2 1 dataset
Motif DE_60h DE_60h-GSX2_MA0893.3 7 bp overlap
Gata3 1 dataset
Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap
HOXA1 1 dataset
Motif DE_60h DE_60h-HOXA1_MA1495.2 6 bp overlap
HOXA2 1 dataset
Motif DE_60h DE_60h-HOXA2_MA0900.3 6 bp overlap
HOXA3 1 dataset
Motif DE_60h DE_60h-HOXA3_MA2119.1 7 bp overlap
HOXB1 1 dataset
Motif DE_60h DE_60h-HOXB1_MA2093.1 7 bp overlap
HOXB2 1 dataset
Motif DE_60h DE_60h-HOXB2_MA0902.3 6 bp overlap
HOXB3 1 dataset
Motif DE_60h DE_60h-HOXB3_MA0903.2 6 bp overlap
HOXB5 1 dataset
Motif DE_60h DE_60h-HOXB5_MA0904.3 6 bp overlap
HOXC8 1 dataset
Motif DE_60h DE_60h-HOXC8_MA1505.2 6 bp overlap
HOXD3 1 dataset
Motif DE_60h DE_60h-HOXD3_MA0912.2 8 bp overlap
IRF2 1 dataset
Motif DE_60h DE_60h-IRF2_MA0051.2 16 bp overlap
ISL1 1 dataset
ChIP SK-N-SH ENCFF285GEQ 482 bp overlap
ISX 1 dataset
Motif DE_60h DE_60h-ISX_MA0654.2 6 bp overlap
JMJD1C 1 dataset
ChIP THP-1 GSE63484.JMJD1C.THP-1 183 bp overlap
JUND 1 dataset
Motif DE_60h DE_60h-JUND_MA0492.2 11 bp overlap
LBX1 1 dataset
Motif DE_60h DE_60h-LBX1_MA0618.2 7 bp overlap
LHX5 1 dataset
Motif DE_60h DE_60h-LHX5_MA1519.2 7 bp overlap
LHX6 1 dataset
Motif DE_60h DE_60h-LHX6_MA0658.2 8 bp overlap
LHX9 1 dataset
Motif DE_60h DE_60h-LHX9_MA0701.3 7 bp overlap
LMX1A 1 dataset
Motif DE_60h DE_60h-LMX1A_MA0702.3 7 bp overlap
LMX1B 1 dataset
Motif DE_60h DE_60h-LMX1B_MA0703.3 8 bp overlap
Lhx4 1 dataset
Motif DE_60h DE_60h-Lhx4_MA0704.2 6 bp overlap
Lhx8 1 dataset
Motif DE_60h DE_60h-Lhx8_MA0705.2 6 bp overlap
MEF2B 1 dataset
Motif DE_60h DE_60h-MEF2B_MA0660.1 12 bp overlap
MEF2C 1 dataset
Motif DE_60h DE_60h-MEF2C_MA0497.2 11 bp overlap
MEF2D 4 datasets
Motif DE_60h DE_60h-MEF2D_MA0773.1 12 bp overlap
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 278 bp overlap
ChIP retina_Hu21 GSE137311.MEF2D.retina_Hu21 279 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 311 bp overlap
MEOX1 1 dataset
Motif DE_60h DE_60h-MEOX1_MA0661.2 7 bp overlap
MEOX2 1 dataset
Motif DE_60h DE_60h-MEOX2_MA0706.2 7 bp overlap
MIXL1 1 dataset
Motif DE_60h DE_60h-MIXL1_MA0662.2 6 bp overlap
MNX1 1 dataset
Motif DE_60h DE_60h-MNX1_MA0707.3 6 bp overlap
MYB 1 dataset
ChIP Loucy GSE94000.MYB.Loucy 245 bp overlap
NEUROD1 3 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 431 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 406 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 181 bp overlap
NKX6-2 1 dataset
Motif DE_60h DE_60h-NKX6-2_MA0675.2 6 bp overlap
NOTO 1 dataset
Motif DE_60h DE_60h-NOTO_MA0710.2 7 bp overlap
NRL 1 dataset
ChIP retina_Hu13 GSE137311.NRL.retina_Hu13 302 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 432 bp overlap
PDX1 1 dataset
Motif DE_60h DE_60h-PDX1_MA0132.3 6 bp overlap
PHOX2A 1 dataset
Motif DE_60h DE_60h-PHOX2A_MA0713.1 11 bp overlap
PHOX2B 1 dataset
Motif DE_60h DE_60h-PHOX2B_MA0681.3 12 bp overlap
POU3F2 1 dataset
Motif DE_60h DE_60h-POU3F2_MA0787.1 12 bp overlap
POU3F3 1 dataset
Motif DE_60h DE_60h-POU3F3_MA0788.1 13 bp overlap
POU6F1 1 dataset
Motif DE_60h DE_60h-POU6F1_MA0628.2 6 bp overlap
POU6F2 1 dataset
Motif DE_60h DE_60h-POU6F2_MA0793.2 9 bp overlap
PROP1 1 dataset
Motif DE_60h DE_60h-PROP1_MA0715.1 11 bp overlap
PRRX1 1 dataset
Motif DE_60h DE_60h-PRRX1_MA0716.2 6 bp overlap
PRRX2 1 dataset
Motif DE_60h DE_60h-PRRX2_MA0075.4 7 bp overlap
RAX2 1 dataset
Motif DE_60h DE_60h-RAX2_MA0717.2 6 bp overlap
RBPJ 1 dataset
Motif DE_60h DE_60h-RBPJ_MA1116.2 6 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 437 bp overlap
RUNX1 3 datasets
ChIP ME-1 GSE46044.RUNX1.ME-1 296 bp overlap
ChIP ME-1 GSE117138.RUNX1.ME-1 229 bp overlap
ChIP ME-1_KD GSE128771.RUNX1.ME-1_KD 229 bp overlap
SHOX 1 dataset
Motif DE_60h DE_60h-SHOX_MA0630.2 6 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 467 bp overlap
SOX10 1 dataset
Motif DE_60h DE_60h-SOX10_MA0442.3 6 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 236 bp overlap
SOX4 1 dataset
Motif DE_60h DE_60h-SOX4_MA0867.3 8 bp overlap
SOX8 1 dataset
ChIP RH4_Entinostat-6H GSE116344.SOX8.RH4_Entinostat-6H 177 bp overlap
Shox2 1 dataset
Motif DE_60h DE_60h-Shox2_MA0720.2 6 bp overlap
Sox11 1 dataset
Motif DE_60h DE_60h-Sox11_MA0869.3 8 bp overlap
Sox5 1 dataset
Motif DE_60h DE_60h-Sox5_MA0087.3 8 bp overlap
TLX2 1 dataset
Motif DE_60h DE_60h-TLX2_MA1577.2 6 bp overlap
TRPS1 1 dataset
Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap
UNCX 1 dataset
Motif DE_60h DE_60h-UNCX_MA0721.2 6 bp overlap
VAX1 1 dataset
Motif DE_60h DE_60h-VAX1_MA0722.2 7 bp overlap
VAX2 1 dataset
Motif DE_60h DE_60h-VAX2_MA0723.3 6 bp overlap
VSX1 1 dataset
Motif DE_60h DE_60h-VSX1_MA0725.2 7 bp overlap
VSX2 1 dataset
Motif DE_60h DE_60h-VSX2_MA0726.2 7 bp overlap
ZBTB40 6 datasets
ChIP Hep-G2 ENCSR525YFS.ZBTB40.Hep-G2 353 bp overlap
ChIP HepG2 ENCFF162FPR 248 bp overlap
ChIP K-562 ENCSR237VLT.ZBTB40.K-562 379 bp overlap
ChIP K562 ENCFF521DSV 429 bp overlap
ChIP MCF-7 ENCFF044DWL 117 bp overlap
ChIP MCF-7 ENCSR318LVG.ZBTB40.MCF-7 314 bp overlap
Zfp335 1 dataset
Motif DE_60h DE_60h-Zfp335_MA2002.2 7 bp overlap
mix-a 1 dataset
Motif DE_60h DE_60h-mix-a_MA0621.2 7 bp overlap