chr3 : 16,329,411 16,330,587
1,176 bp 74 TFs 1 linked gene
This 1.2 kb open chromatin element is linked to ENSG00000272498 and is bound by 74 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
ENSG00000272498 8.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:16,324,411 – 16,335,587
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
74 transcription factors
Source
Cell type
AR 1 dataset
ChIP MCF-7 GSE48930.AR.MCF-7 162 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 634 bp overlap
BAP1 1 dataset
ChIP NCI-H1963_shNONT GSE145028.BAP1.NCI-H1963_shNONT 255 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 298 bp overlap
BRD4 9 datasets
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 749 bp overlap
ChIP NCI-H1963_dBET6 GSE145028.BRD4.NCI-H1963_dBET6 279 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 992 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 695 bp overlap
ChIP SUM159PT_100nMtrametinib_24h GSE87418.BRD4.SUM159PT_100nMtrametinib_24h 313 bp overlap
ChIP cortical-interneuron_KCl-pos GSE117508.BRD4.cortical-interneuron_KCl-pos 200 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 434 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 724 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 170 bp overlap
CDX1 1 dataset
Motif DE_36h DE_36h-CDX1_MA0878.3 10 bp overlap
CDX2 1 dataset
Motif DE_36h DE_36h-CDX2_MA0465.3 8 bp overlap
CDX4 1 dataset
Motif DE_36h DE_36h-CDX4_MA1473.2 9 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 272 bp overlap
CTCF 1 dataset
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 485 bp overlap
E2F1 1 dataset
Motif DE_36h DE_36h-E2F1_MA0024.3 12 bp overlap
E2F2 1 dataset
Motif DE_36h DE_36h-E2F2_MA0864.3 13 bp overlap
E2F4 1 dataset
Motif DE_36h DE_36h-E2F4_MA0470.3 13 bp overlap
ELF1 1 dataset
ChIP A-549 GSE122203.ELF1.A-549 105 bp overlap
EP300 3 datasets
ChIP neural ENCSR843ZUP.EP300.neural 426 bp overlap
ChIP neural cell ENCFF442QNK 289 bp overlap
ChIP tibial nerve ENCFF346AYA 114 bp overlap
ESR1 5 datasets
ChIP Ishikawa_C2-14 GSE147141.ESR1.Ishikawa_C2-14 210 bp overlap
ChIP Ishikawa_E2_D538G_clone2 GSE132426.ESR1.Ishikawa_E2_D538G_clone2 183 bp overlap
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 220 bp overlap
ChIP Ishikawa_ETV4-OE GSE129803.ESR1.Ishikawa_ETV4-OE 83 bp overlap
ChIP MCF-7_PaPE-1_OA GSE93510.ESR1.MCF-7_PaPE-1_OA 151 bp overlap
GATA1 2 datasets
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 149 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 291 bp overlap
GATA2 1 dataset
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 273 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-2 364 bp overlap
ChIP foregut GSE117136.GATA4.foregut 288 bp overlap
GATA6 11 datasets
ChIP DE DE-GATA6-2 417 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 345 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 497 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 415 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 380 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 1014 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 509 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 509 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 579 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 427 bp overlap
ChIP foregut GSE117136.GATA6.foregut 493 bp overlap
GCM1 1 dataset
Motif DE_36h DE_36h-GCM1_MA0646.2 10 bp overlap
HNF4A 1 dataset
ChIP liver ENCFF449HPV 80 bp overlap
HOXA10 1 dataset
Motif DE_36h DE_36h-HOXA10_MA0899.2 9 bp overlap
HOXB13 1 dataset
Motif DE_36h DE_36h-HOXB13_MA0901.3 9 bp overlap
HOXD9 1 dataset
Motif DE_36h DE_36h-HOXD9_MA0913.3 9 bp overlap
Hoxa13 1 dataset
Motif DE_36h DE_36h-Hoxa13_MA0650.4 8 bp overlap
Hoxd13 1 dataset
Motif DE_36h DE_36h-Hoxd13_MA0909.4 7 bp overlap
JUN 2 datasets
ChIP 786-O GSE86092.JUN.786-O 177 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 162 bp overlap
JUND 1 dataset
ChIP liver ENCFF007WWT 51 bp overlap
KDM5B 1 dataset
ChIP SUM159 GSE46055.KDM5B.SUM159 107 bp overlap
KLF4 1 dataset
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 112 bp overlap
MEIS1 1 dataset
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
MXI1 3 datasets
ChIP neural ENCSR934NHU.MXI1.neural 404 bp overlap
ChIP neural cell ENCFF623HQN 605 bp overlap
ChIP neural cell ENCFF623HQN 605 bp overlap
NANOG 1 dataset
ChIP WA01 ENCSR000BMT.NANOG.WA01 151 bp overlap
NKX2-2 1 dataset
Motif DE_36h DE_36h-NKX2-2_MA1645.2 8 bp overlap
NR3C1 1 dataset
ChIP A-549 ENCSR000BJR.NR3C1.A-549 191 bp overlap
Nr2e3 1 dataset
Motif DE_36h DE_36h-Nr2e3_MA0164.2 6 bp overlap
OSR1 1 dataset
Motif DE_36h DE_36h-OSR1_MA1542.2 8 bp overlap
OSR2 1 dataset
Motif DE_36h DE_36h-OSR2_MA1646.2 8 bp overlap
PBX3 1 dataset
Motif DE_36h DE_36h-PBX3_MA1114.2 11 bp overlap
PDX1 2 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 285 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 172 bp overlap
PKNOX1 1 dataset
Motif DE_36h DE_36h-PKNOX1_MA0782.3 10 bp overlap
POLR2A 4 datasets
ChIP GM12878 ENCFF521FXC 451 bp overlap
ChIP GM12891 ENCFF127ICP 388 bp overlap
ChIP GM12892 ENCFF542ZFO 408 bp overlap
ChIP neural cell ENCFF604SPB 188 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 164 bp overlap
PRPF4 1 dataset
ChIP Hep-G2 GSE120104.PRPF4.Hep-G2 169 bp overlap
Prdm15 1 dataset
Motif DE_36h DE_36h-Prdm15_MA1616.2 11 bp overlap
RAD21 1 dataset
ChIP neural ENCSR198ZYJ.RAD21.neural 328 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 150 bp overlap
REST 3 datasets
ChIP neural ENCSR000BTV.REST.neural 1169 bp overlap
ChIP neural cell ENCFF882LXX 265 bp overlap
ChIP neural cell ENCFF882LXX 505 bp overlap
RFX1 10 datasets
Motif DE_36h DE_36h-RFX1_MA0509.3 16 bp overlap
ChIP HepG2 ENCFF144SCF 437 bp overlap
ChIP K-562 ENCSR968GIB.RFX1.K-562 485 bp overlap
ChIP K-562 ENCSR041AXL.RFX1.K-562 432 bp overlap
ChIP K562 ENCFF421AVO 399 bp overlap
ChIP K562 ENCFF809XVG 280 bp overlap
ChIP MCF-7 ENCFF782EZS 441 bp overlap
ChIP MCF-7 ENCFF973QAD 165 bp overlap
ChIP MCF-7 ENCSR066TET.RFX1.MCF-7 439 bp overlap
ChIP MCF-7 ENCSR788XNX.RFX1.MCF-7 375 bp overlap
RFX2 1 dataset
Motif DE_36h DE_36h-RFX2_MA0600.3 14 bp overlap
RFX3 1 dataset
Motif DE_36h DE_36h-RFX3_MA0798.3 16 bp overlap
RFX5 1 dataset
Motif DE_36h DE_36h-RFX5_MA0510.3 14 bp overlap
Rfx6 1 dataset
Motif DE_36h DE_36h-Rfx6_MA1724.2 9 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 1083 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 1106 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 1087 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 446 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 890 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 884 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 1112 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 1123 bp overlap
SMARCA4 3 datasets
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 207 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 328 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 132 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 332 bp overlap
SMC3 3 datasets
ChIP neural ENCSR404BPV.SMC3.neural 681 bp overlap
ChIP neural cell ENCFF795YGY 531 bp overlap
ChIP neural cell ENCFF795YGY 531 bp overlap
SOX10 1 dataset
Motif DE_36h DE_36h-SOX10_MA0442.3 6 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 953 bp overlap
ChIP RENVM GSE49404.SOX2.RENVM 206 bp overlap
SOX3 1 dataset
ChIP NPC GSE122631.SOX3.NPC 212 bp overlap
SUPT5H 1 dataset
ChIP U2OS_siCtrl GSE115365.SUPT5H.U2OS_siCtrl 104 bp overlap
Sox6 1 dataset
Motif DE_36h DE_36h-Sox6_MA0515.1 10 bp overlap
TAF1 1 dataset
ChIP neural ENCSR000BTX.TAF1.neural 267 bp overlap
TAL1 1 dataset
ChIP MOLT-3 GSE59657.TAL1.MOLT-3 101 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 146 bp overlap
YY1 2 datasets
ChIP WA01 ENCSR000BKD.YY1.WA01 166 bp overlap
ChIP liver ENCFF400MBC 100 bp overlap
ZBTB33 4 datasets
ChIP HepG2 ENCFF778UKV 337 bp overlap
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 390 bp overlap
ChIP K562 ENCFF427SDV 505 bp overlap
ChIP K562 ENCFF875HLX 220 bp overlap
ZFX 1 dataset
ChIP MCF-7 GSE102616.ZFX.MCF-7 188 bp overlap
ZNF354A 1 dataset
Motif DE_36h DE_36h-ZNF354A_MA1978.2 20 bp overlap
ZNF417 1 dataset
Motif DE_36h DE_36h-ZNF417_MA1727.2 7 bp overlap
ZNF564 1 dataset
ChIP HepG2 ENCFF364ZIM 109 bp overlap
ZNF687 1 dataset
ChIP HepG2 ENCFF653WIX 534 bp overlap