chr3 : 7,854,370 7,855,939
1,569 bp 116 TFs 0 linked genes
This 1.6 kb open chromatin element has no linked target genes and is bound by 116 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:7,849,370 – 7,860,939
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
116 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP_D226N_shFOXA1_Ethanol GSE128883.AR.LNCaP_D226N_shFOXA1_Ethanol 171 bp overlap
Ar 1 dataset
Motif DE_12h DE_12h-Ar_MA0007.4 16 bp overlap
Atf3 1 dataset
Motif DE_36h DE_36h-Atf3_MA1988.2 7 bp overlap
BACH1 1 dataset
Motif DE_36h DE_36h-BACH1_MA1633.2 9 bp overlap
BACH2 1 dataset
Motif DE_36h DE_36h-BACH2_MA1101.3 11 bp overlap
BATF 1 dataset
Motif DE_36h DE_36h-BATF_MA1634.2 7 bp overlap
BATF3 1 dataset
Motif DE_36h DE_36h-BATF3_MA0835.3 7 bp overlap
BNC2 1 dataset
Motif DE_36h DE_36h-BNC2_MA1928.2 7 bp overlap
BRD4 1 dataset
ChIP hESC GSE33281.BRD4.hESC 61 bp overlap
CDX1 1 dataset
Motif DE_24h DE_24h-CDX1_MA0878.3 10 bp overlap
DUX4 1 dataset
ChIP WA01 GSE94322.DUX4.WA01 309 bp overlap
DUXA 1 dataset
Motif DE_24h DE_24h-DUXA_MA0884.2 13 bp overlap
EHF 3 datasets
Motif DE_12h DE_12h-EHF_MA0598.4 9 bp overlap
Motif DE_24h DE_24h-EHF_MA0598.4 9 bp overlap
Motif DE_36h DE_36h-EHF_MA0598.4 9 bp overlap
ELF3 3 datasets
Motif DE_12h DE_12h-ELF3_MA0640.3 9 bp overlap
Motif DE_24h DE_24h-ELF3_MA0640.3 9 bp overlap
Motif DE_36h DE_36h-ELF3_MA0640.3 9 bp overlap
EOMES 5 datasets
Motif DE_12h DE_12h-EOMES_MA0800.2 9 bp overlap
Motif DE_24h DE_24h-EOMES_MA0800.2 9 bp overlap
Motif DE_36h DE_36h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 676 bp overlap
ChIP hESC GSE26097.EOMES.hESC 201 bp overlap
ETV7 3 datasets
Motif DE_12h DE_12h-ETV7_MA1708.2 9 bp overlap
Motif DE_24h DE_24h-ETV7_MA1708.2 9 bp overlap
Motif DE_36h DE_36h-ETV7_MA1708.2 9 bp overlap
EVI1 1 dataset
ChIP SKH1_10d GSE87283.EVI1.SKH1_10d 166 bp overlap
EZH2 1 dataset
ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 311 bp overlap
FOS 1 dataset
Motif DE_36h DE_36h-FOS_MA0476.2 8 bp overlap
FOSL1 1 dataset
Motif DE_36h DE_36h-FOSL1_MA0477.3 9 bp overlap
FOSL2 1 dataset
Motif DE_36h DE_36h-FOSL2_MA0478.2 10 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 529 bp overlap
ChIP DE DE-FOXA2-2 576 bp overlap
FOXE1 1 dataset
Motif DE_24h DE_24h-FOXE1_MA1487.3 12 bp overlap
FOXP2 1 dataset
Motif DE_24h DE_24h-FOXP2_MA0593.2 9 bp overlap
GATA2 2 datasets
Motif DE_36h DE_36h-GATA2_MA0036.4 7 bp overlap
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 218 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 594 bp overlap
ChIP DE DE-GATA4-2 860 bp overlap
Motif DE_36h DE_36h-GATA4_MA0482.3 8 bp overlap
GATA5 1 dataset
Motif DE_36h DE_36h-GATA5_MA0766.3 8 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 592 bp overlap
ChIP DE DE-GATA6-1 304 bp overlap
ChIP DE DE-GATA6-2 642 bp overlap
Motif DE_36h DE_36h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 1466 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 1502 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 1470 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 692 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 392 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 298 bp overlap
GFI1 5 datasets
Motif DE_12h DE_12h-GFI1_MA0038.3 11 bp overlap
Motif DE_12h DE_12h-GFI1_MA0038.3 11 bp overlap
Motif DE_24h DE_24h-GFI1_MA0038.3 11 bp overlap
Motif DE_24h DE_24h-GFI1_MA0038.3 11 bp overlap
Motif DE_36h DE_36h-GFI1_MA0038.3 11 bp overlap
Gata3 1 dataset
Motif DE_36h DE_36h-Gata3_MA0037.5 8 bp overlap
Gfi1B 3 datasets
Motif DE_12h DE_12h-Gfi1B_MA0483.2 10 bp overlap
Motif DE_24h DE_24h-Gfi1B_MA0483.2 10 bp overlap
Motif DE_36h DE_36h-Gfi1B_MA0483.2 10 bp overlap
HNF4A 2 datasets
Motif DE_12h DE_12h-HNF4A_MA1494.2 14 bp overlap
Motif DE_24h DE_24h-HNF4A_MA1494.2 14 bp overlap
Hmx2 3 datasets
Motif DE_12h DE_12h-Hmx2_MA0897.2 15 bp overlap
Motif DE_24h DE_24h-Hmx2_MA0897.2 15 bp overlap
Motif DE_36h DE_36h-Hmx2_MA0897.2 15 bp overlap
IRF4 2 datasets
Motif DE_12h DE_12h-IRF4_MA1419.2 14 bp overlap
Motif DE_24h DE_24h-IRF4_MA1419.2 14 bp overlap
IRF6 2 datasets
Motif DE_12h DE_12h-IRF6_MA1509.1 9 bp overlap
Motif DE_24h DE_24h-IRF6_MA1509.1 9 bp overlap
IRF8 2 datasets
Motif DE_12h DE_12h-IRF8_MA0652.2 13 bp overlap
Motif DE_24h DE_24h-IRF8_MA0652.2 13 bp overlap
IRF9 2 datasets
Motif DE_12h DE_12h-IRF9_MA0653.1 15 bp overlap
Motif DE_24h DE_24h-IRF9_MA0653.1 15 bp overlap
Irf1 1 dataset
Motif DE_24h DE_24h-Irf1_MA0050.4 11 bp overlap
JUN 6 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 915 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 591 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 818 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 678 bp overlap
ChIP HAEC_oxpapc_4h GSE89970.JUN.HAEC_oxpapc_4h 130 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 984 bp overlap
JUNB 1 dataset
Motif DE_36h DE_36h-JUNB_MA0490.3 9 bp overlap
JUND 1 dataset
Motif DE_36h DE_36h-JUND_MA0491.3 9 bp overlap
Jun 1 dataset
Motif DE_36h DE_36h-Jun_MA0489.3 8 bp overlap
MAFK 1 dataset
Motif DE_36h DE_36h-MAFK_MA0496.4 10 bp overlap
MGA::EVX1 3 datasets
Motif DE_12h DE_12h-MGAEVX1_MA1960.2 11 bp overlap
Motif DE_24h DE_24h-MGAEVX1_MA1960.2 11 bp overlap
Motif DE_36h DE_36h-MGAEVX1_MA1960.2 11 bp overlap
Mecom 1 dataset
Motif DE_36h DE_36h-Mecom_MA0029.2 11 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 734 bp overlap
NFATC3 3 datasets
Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap
Motif DE_24h DE_24h-NFATC3_MA0625.3 6 bp overlap
Motif DE_36h DE_36h-NFATC3_MA0625.3 6 bp overlap
NFATC4 1 dataset
Motif DE_36h DE_36h-NFATC4_MA1525.3 9 bp overlap
NFYA 3 datasets
Motif DE_12h DE_12h-NFYA_MA0060.4 8 bp overlap
Motif DE_24h DE_24h-NFYA_MA0060.4 8 bp overlap
Motif DE_36h DE_36h-NFYA_MA0060.4 8 bp overlap
NKX2-5 1 dataset
Motif DE_36h DE_36h-NKX2-5_MA0063.3 7 bp overlap
NR3C1 1 dataset
ChIP LCL_DEX GSE45638.NR3C1.LCL_DEX 99 bp overlap
Nfatc1 3 datasets
Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap
Motif DE_24h DE_24h-Nfatc1_MA0624.3 6 bp overlap
Motif DE_36h DE_36h-Nfatc1_MA0624.3 6 bp overlap
Nfatc2 1 dataset
Motif DE_36h DE_36h-Nfatc2_MA0152.3 8 bp overlap
Nfe2l2 1 dataset
Motif DE_36h DE_36h-Nfe2l2_MA0150.3 11 bp overlap
OSR2 3 datasets
Motif DE_12h DE_12h-OSR2_MA1646.2 8 bp overlap
Motif DE_24h DE_24h-OSR2_MA1646.2 8 bp overlap
Motif DE_36h DE_36h-OSR2_MA1646.2 8 bp overlap
PAX4 1 dataset
Motif DE_24h DE_24h-PAX4_MA0068.2 8 bp overlap
PHOX2A 1 dataset
Motif DE_24h DE_24h-PHOX2A_MA0713.1 11 bp overlap
PHOX2B 1 dataset
Motif DE_24h DE_24h-PHOX2B_MA0681.3 12 bp overlap
POU1F1 1 dataset
Motif DE_24h DE_24h-POU1F1_MA0784.3 14 bp overlap
POU2F1 1 dataset
Motif DE_24h DE_24h-POU2F1_MA0785.2 9 bp overlap
POU2F2 1 dataset
Motif DE_24h DE_24h-POU2F2_MA0507.3 13 bp overlap
POU3F1 1 dataset
Motif DE_24h DE_24h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif DE_24h DE_24h-POU3F2_MA0787.1 12 bp overlap
POU3F3 1 dataset
Motif DE_24h DE_24h-POU3F3_MA0788.1 13 bp overlap
POU3F4 1 dataset
Motif DE_24h DE_24h-POU3F4_MA0789.1 9 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 465 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 589 bp overlap
PROP1 1 dataset
Motif DE_24h DE_24h-PROP1_MA0715.1 11 bp overlap
Pax7 1 dataset
Motif DE_24h DE_24h-Pax7_MA0680.3 10 bp overlap
Prdm15 3 datasets
Motif DE_12h DE_12h-Prdm15_MA1616.2 11 bp overlap
Motif DE_12h DE_12h-Prdm15_MA1616.2 11 bp overlap
Motif DE_24h DE_24h-Prdm15_MA1616.2 11 bp overlap
REL 3 datasets
Motif DE_12h DE_12h-REL_MA0101.1 10 bp overlap
Motif DE_24h DE_24h-REL_MA0101.1 10 bp overlap
Motif DE_36h DE_36h-REL_MA0101.1 10 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 945 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 934 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 838 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 898 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 849 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 318 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 235 bp overlap
SMARCC1 3 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 728 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 1024 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 255 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 594 bp overlap
SP2 1 dataset
ChIP K-562 ENCSR000BNL.SP2.K-562 177 bp overlap
SPIB 1 dataset
Motif DE_24h DE_24h-SPIB_MA0081.3 13 bp overlap
SRF 2 datasets
Motif DE_12h DE_12h-SRF_MA0083.3 16 bp overlap
Motif DE_24h DE_24h-SRF_MA0083.3 16 bp overlap
T 5 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 320 bp overlap
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 300 bp overlap
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 191 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 255 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 325 bp overlap
TBR1 3 datasets
Motif DE_12h DE_12h-TBR1_MA0802.2 9 bp overlap
Motif DE_24h DE_24h-TBR1_MA0802.2 9 bp overlap
Motif DE_36h DE_36h-TBR1_MA0802.2 9 bp overlap
TBX19 4 datasets
Motif DE_12h DE_12h-TBX19_MA0804.2 17 bp overlap
Motif DE_24h DE_24h-TBX19_MA0804.2 17 bp overlap
Motif DE_24h DE_24h-TBX19_MA0804.2 17 bp overlap
Motif DE_36h DE_36h-TBX19_MA0804.2 17 bp overlap
TBX2 3 datasets
Motif DE_12h DE_12h-TBX2_MA0688.2 9 bp overlap
Motif DE_24h DE_24h-TBX2_MA0688.2 9 bp overlap
Motif DE_36h DE_36h-TBX2_MA0688.2 9 bp overlap
TBX3 3 datasets
Motif DE_12h DE_12h-TBX3_MA1566.3 9 bp overlap
Motif DE_24h DE_24h-TBX3_MA1566.3 9 bp overlap
Motif DE_36h DE_36h-TBX3_MA1566.3 9 bp overlap
TRPS1 1 dataset
Motif DE_36h DE_36h-TRPS1_MA1970.2 8 bp overlap
Vdr 1 dataset
Motif DE_24h DE_24h-Vdr_MA0693.4 7 bp overlap
ZBED2 2 datasets
Motif DE_12h DE_12h-ZBED2_MA1971.2 7 bp overlap
Motif DE_24h DE_24h-ZBED2_MA1971.2 7 bp overlap
ZBTB6 1 dataset
Motif DE_24h DE_24h-ZBTB6_MA1581.2 9 bp overlap
ZIM3 1 dataset
Motif DE_24h DE_24h-ZIM3_MA1709.2 11 bp overlap
ZNF143 1 dataset
ChIP K-562 GSE39263.ZNF143.K-562 179 bp overlap
ZNF184 1 dataset
Motif DE_24h DE_24h-ZNF184_MA2120.1 13 bp overlap
ZNF331 3 datasets
Motif DE_12h DE_12h-ZNF331_MA1726.2 10 bp overlap
Motif DE_24h DE_24h-ZNF331_MA1726.2 10 bp overlap
Motif DE_36h DE_36h-ZNF331_MA1726.2 10 bp overlap
ZNF343 1 dataset
Motif DE_24h DE_24h-ZNF343_MA1711.2 16 bp overlap
ZNF416 1 dataset
Motif DE_24h DE_24h-ZNF416_MA1979.2 10 bp overlap
ZNF652 3 datasets
Motif DE_12h DE_12h-ZNF652_MA1657.2 9 bp overlap
Motif DE_24h DE_24h-ZNF652_MA1657.2 9 bp overlap
Motif DE_36h DE_36h-ZNF652_MA1657.2 9 bp overlap
ZSCAN16 3 datasets
Motif DE_12h DE_12h-ZSCAN16_MA2100.1 18 bp overlap
Motif DE_24h DE_24h-ZSCAN16_MA2100.1 18 bp overlap
Motif DE_36h DE_36h-ZSCAN16_MA2100.1 18 bp overlap
Zic1::Zic2 4 datasets
Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_24h DE_24h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_24h DE_24h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_36h DE_36h-Zic1Zic2_MA1628.2 7 bp overlap
Zic2 4 datasets
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Motif DE_24h DE_24h-Zic2_MA1629.2 9 bp overlap
Motif DE_24h DE_24h-Zic2_MA1629.2 9 bp overlap
Motif DE_36h DE_36h-Zic2_MA1629.2 9 bp overlap
Zic3 4 datasets
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap
Motif DE_24h DE_24h-Zic3_MA0697.3 7 bp overlap
Motif DE_24h DE_24h-Zic3_MA0697.3 7 bp overlap
Motif DE_36h DE_36h-Zic3_MA0697.3 7 bp overlap