chr2 : 200,090,238 200,091,621
1,383 bp 66 TFs 4 linked genes
This 1.4 kb open chromatin element is linked to 4 target genes and is bound by 66 transcription factors.
Linked Genes
4 genes
Gene Expression Dist. to TSS Distance Link type
MAIP1 135.5 kb Distal Multiome
TYW5 135.8 kb Distal Multiome
C2orf69 180.0 kb Distal Multiome
SPATS2L 214.7 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:200,085,238 – 200,096,621
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
66 transcription factors
Source
Cell type
ASXL3 2 datasets
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 720 bp overlap
ChIP NCI-H1963_Ab2 GSE145028.ASXL3.NCI-H1963_Ab2 243 bp overlap
Ascl2 3 datasets
Motif DE_36h DE_36h-Ascl2_MA0816.1 10 bp overlap
Motif DE_48h DE_48h-Ascl2_MA0816.1 10 bp overlap
Motif DE_60h DE_60h-Ascl2_MA0816.1 10 bp overlap
BAP1 1 dataset
ChIP NCI-H1963_shASXL3 GSE145028.BAP1.NCI-H1963_shASXL3 413 bp overlap
BRD4 12 datasets
ChIP CLB-Ga_Dinaciclib GSE133453.BRD4.CLB-Ga_Dinaciclib 393 bp overlap
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 100 bp overlap
ChIP K-562_iBET-BD2-IFNG GSE138084.BRD4.K-562_iBET-BD2-IFNG 182 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 256 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 231 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 838 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 322 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 212 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 632 bp overlap
ChIP RH4 GSE83726.BRD4.RH4 238 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 204 bp overlap
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 213 bp overlap
CHD4 1 dataset
ChIP RH5 GSE155861.CHD4.RH5 497 bp overlap
CTCF 4 datasets
Motif DE_36h DE_36h-CTCF_MA0139.2 15 bp overlap
Motif DE_48h DE_48h-CTCF_MA0139.2 15 bp overlap
Motif DE_60h DE_60h-CTCF_MA0139.2 15 bp overlap
Motif DE_72h DE_72h-CTCF_MA0139.2 15 bp overlap
CTCFL 7 datasets
Motif DE_36h DE_36h-CTCFL_MA1102.3 8 bp overlap
Motif DE_48h DE_48h-CTCFL_MA1102.3 8 bp overlap
Motif DE_60h DE_60h-CTCFL_MA1102.3 8 bp overlap
Motif DE_72h DE_72h-CTCFL_MA1102.3 8 bp overlap
ChIP Kelly_resistant GSE103030.CTCFL.Kelly_resistant 116 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.CTCFL.Kelly_resistant_JQ1 143 bp overlap
ChIP Kelly_shLUC-res GSE115248.CTCFL.Kelly_shLUC-res 271 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF262VBH 135 bp overlap
ChIP BLaER1 ENCFF460KDD 339 bp overlap
EOMES 2 datasets
ChIP hESC GSE26097.EOMES.hESC 211 bp overlap
ChIP hESC GSE26097.EOMES.hESC 268 bp overlap
FEZF2 3 datasets
Motif DE_36h DE_36h-FEZF2_MA2341.1 8 bp overlap
Motif DE_48h DE_48h-FEZF2_MA2341.1 8 bp overlap
Motif DE_60h DE_60h-FEZF2_MA2341.1 8 bp overlap
FOXA1 1 dataset
ChIP LNCaP_SHFOXA1_R1881 GSE37345.FOXA1.LNCaP_SHFOXA1_R1881 114 bp overlap
FOXA2 4 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 274 bp overlap
ChIP DE DE-FOXA2-1 344 bp overlap
ChIP DE DE-FOXA2-1 352 bp overlap
ChIP DE DE-FOXA2-2 264 bp overlap
FOXH1 4 datasets
Motif DE_36h DE_36h-FOXH1_MA0479.2 8 bp overlap
Motif DE_48h DE_48h-FOXH1_MA0479.2 8 bp overlap
Motif DE_60h DE_60h-FOXH1_MA0479.2 8 bp overlap
Motif DE_72h DE_72h-FOXH1_MA0479.2 8 bp overlap
GATA1 1 dataset
ChIP K-562 GSE107726.GATA1.K-562 212 bp overlap
GATA2 3 datasets
ChIP SH-SY5Y ENCFF485YIB 405 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 325 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 167 bp overlap
GATA3 8 datasets
ChIP BE2C GSE65664.GATA3.BE2C 255 bp overlap
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 593 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 295 bp overlap
ChIP Kelly GSE94822.GATA3.Kelly 255 bp overlap
ChIP MCF-7_sgScr GSE133072.GATA3.MCF-7_sgScr 178 bp overlap
ChIP NGP GSE65664.GATA3.NGP 253 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 300 bp overlap
ChIP T-47D_sc GSE122847.GATA3.T-47D_sc 178 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 1382 bp overlap
ChIP DE DE-GATA4-2 1380 bp overlap
ChIP foregut GSE117136.GATA4.foregut 330 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 500 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 368 bp overlap
GATA6 18 datasets
ChIP AGS GSE51705.GATA6.AGS 132 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 203 bp overlap
ChIP DE DE-GATA6-1 671 bp overlap
ChIP DE DE-GATA6-1 460 bp overlap
ChIP DE DE-GATA6-2 1228 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 632 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 555 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 687 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 483 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 507 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 614 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 1383 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 1305 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 204 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 1301 bp overlap
ChIP foregut GSE117136.GATA6.foregut 300 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 293 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 387 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 274 bp overlap
HAND2 6 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 704 bp overlap
Motif DE_36h DE_36h-HAND2_MA1638.2 6 bp overlap
Motif DE_48h DE_48h-HAND2_MA1638.2 6 bp overlap
Motif DE_60h DE_60h-HAND2_MA1638.2 6 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 851 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 394 bp overlap
HDAC2 2 datasets
ChIP RH4_DMSO-6H GSE116344.HDAC2.RH4_DMSO-6H 376 bp overlap
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 253 bp overlap
Hnf1A 3 datasets
Motif DE_36h DE_36h-Hnf1A_MA1991.2 10 bp overlap
Motif DE_48h DE_48h-Hnf1A_MA1991.2 10 bp overlap
Motif DE_60h DE_60h-Hnf1A_MA1991.2 10 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 327 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 289 bp overlap
MAZ 4 datasets
Motif DE_36h DE_36h-MAZ_MA1522.2 8 bp overlap
Motif DE_48h DE_48h-MAZ_MA1522.2 8 bp overlap
Motif DE_60h DE_60h-MAZ_MA1522.2 8 bp overlap
Motif DE_72h DE_72h-MAZ_MA1522.2 8 bp overlap
MED1 1 dataset
ChIP RH4 GSE83726.MED1.RH4 265 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 638 bp overlap
MYCN 6 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 593 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 558 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 324 bp overlap
ChIP RH4 GSE83726.MYCN.RH4 162 bp overlap
ChIP RH4 GSE83726.MYCN.RH4 265 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 236 bp overlap
MYOD1 6 datasets
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 390 bp overlap
ChIP RH4 GSE83726.MYOD1.RH4 157 bp overlap
ChIP RH4 GSE83726.MYOD1.RH4 169 bp overlap
ChIP SMS-CTR GSE137168.MYOD1.SMS-CTR 196 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 148 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 109 bp overlap
MYOG 1 dataset
ChIP RH4 GSE83726.MYOG.RH4 224 bp overlap
NANOG 5 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 253 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 162 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 407 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 249 bp overlap
ChIP hESC GSE18292.NANOG.hESC 96 bp overlap
NHLH2 3 datasets
Motif DE_36h DE_36h-NHLH2_MA1529.2 16 bp overlap
Motif DE_48h DE_48h-NHLH2_MA1529.2 16 bp overlap
Motif DE_60h DE_60h-NHLH2_MA1529.2 16 bp overlap
PHOX2B 1 dataset
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 807 bp overlap
POU5F1 1 dataset
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 706 bp overlap
Ptf1A 3 datasets
Motif DE_36h DE_36h-Ptf1A_MA1618.2 9 bp overlap
Motif DE_48h DE_48h-Ptf1A_MA1618.2 9 bp overlap
Motif DE_60h DE_60h-Ptf1A_MA1618.2 9 bp overlap
RAD21 1 dataset
ChIP RH4 GSE83726.RAD21.RH4 177 bp overlap
RBBP4 2 datasets
ChIP RH5 GSE155861.RBBP4.RH5 270 bp overlap
ChIP SCMC GSE155861.RBBP4.SCMC 889 bp overlap
REST 3 datasets
ChIP PFSK-1 ENCFF845VHA 321 bp overlap
ChIP PFSK1 ENCSR000BOX.REST.PFSK1 297 bp overlap
ChIP WA01 ENCSR000BHM.REST.WA01 201 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 277 bp overlap
SMAD2-3 4 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 379 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 428 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 345 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 282 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 299 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 396 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 400 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 348 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 240 bp overlap
SMARCA4 2 datasets
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 337 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 343 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 268 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 333 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 321 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 235 bp overlap
TBX2 1 dataset
ChIP Kelly GSE94822.TBX2.Kelly 250 bp overlap
TCF7L1 3 datasets
Motif DE_36h DE_36h-TCF7L1_MA1421.1 12 bp overlap
Motif DE_48h DE_48h-TCF7L1_MA1421.1 12 bp overlap
Motif DE_60h DE_60h-TCF7L1_MA1421.1 12 bp overlap
THAP1 4 datasets
Motif DE_36h DE_36h-THAP1_MA0597.3 8 bp overlap
Motif DE_48h DE_48h-THAP1_MA0597.3 8 bp overlap
Motif DE_60h DE_60h-THAP1_MA0597.3 8 bp overlap
Motif DE_72h DE_72h-THAP1_MA0597.3 8 bp overlap
YY1 1 dataset
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 176 bp overlap
ZIC1 8 datasets
Motif DE_36h DE_36h-ZIC1_MA0696.1 14 bp overlap
Motif DE_36h DE_36h-ZIC1_MA0696.1 14 bp overlap
Motif DE_48h DE_48h-ZIC1_MA0696.1 14 bp overlap
Motif DE_48h DE_48h-ZIC1_MA0696.1 14 bp overlap
Motif DE_60h DE_60h-ZIC1_MA0696.1 14 bp overlap
Motif DE_60h DE_60h-ZIC1_MA0696.1 14 bp overlap
Motif DE_72h DE_72h-ZIC1_MA0696.1 14 bp overlap
Motif DE_72h DE_72h-ZIC1_MA0696.1 14 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 324 bp overlap
ZIC4 8 datasets
Motif DE_36h DE_36h-ZIC4_MA0751.2 14 bp overlap
Motif DE_36h DE_36h-ZIC4_MA0751.2 14 bp overlap
Motif DE_48h DE_48h-ZIC4_MA0751.2 14 bp overlap
Motif DE_48h DE_48h-ZIC4_MA0751.2 14 bp overlap
Motif DE_60h DE_60h-ZIC4_MA0751.2 14 bp overlap
Motif DE_60h DE_60h-ZIC4_MA0751.2 14 bp overlap
Motif DE_72h DE_72h-ZIC4_MA0751.2 14 bp overlap
Motif DE_72h DE_72h-ZIC4_MA0751.2 14 bp overlap
ZIC5 4 datasets
Motif DE_36h DE_36h-ZIC5_MA1584.2 15 bp overlap
Motif DE_48h DE_48h-ZIC5_MA1584.2 15 bp overlap
Motif DE_60h DE_60h-ZIC5_MA1584.2 15 bp overlap
Motif DE_72h DE_72h-ZIC5_MA1584.2 15 bp overlap
ZIM3 4 datasets
Motif DE_36h DE_36h-ZIM3_MA1709.2 11 bp overlap
Motif DE_48h DE_48h-ZIM3_MA1709.2 11 bp overlap
Motif DE_60h DE_60h-ZIM3_MA1709.2 11 bp overlap
Motif DE_72h DE_72h-ZIM3_MA1709.2 11 bp overlap
ZNF148 4 datasets
Motif DE_36h DE_36h-ZNF148_MA1653.2 10 bp overlap
Motif DE_48h DE_48h-ZNF148_MA1653.2 10 bp overlap
Motif DE_60h DE_60h-ZNF148_MA1653.2 10 bp overlap
Motif DE_72h DE_72h-ZNF148_MA1653.2 10 bp overlap
ZNF189 3 datasets
Motif DE_36h DE_36h-ZNF189_MA1725.2 9 bp overlap
Motif DE_48h DE_48h-ZNF189_MA1725.2 9 bp overlap
Motif DE_60h DE_60h-ZNF189_MA1725.2 9 bp overlap
ZNF354C 4 datasets
Motif DE_36h DE_36h-ZNF354C_MA0130.1 6 bp overlap
Motif DE_48h DE_48h-ZNF354C_MA0130.1 6 bp overlap
Motif DE_60h DE_60h-ZNF354C_MA0130.1 6 bp overlap
Motif DE_72h DE_72h-ZNF354C_MA0130.1 6 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 317 bp overlap
ZNF701 1 dataset
Motif DE_36h DE_36h-ZNF701_MA1987.2 17 bp overlap
Zic1::Zic2 4 datasets
Motif DE_36h DE_36h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_48h DE_48h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_60h DE_60h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_72h DE_72h-Zic1Zic2_MA1628.2 7 bp overlap
Zic2 4 datasets
Motif DE_36h DE_36h-Zic2_MA1629.2 9 bp overlap
Motif DE_48h DE_48h-Zic2_MA1629.2 9 bp overlap
Motif DE_60h DE_60h-Zic2_MA1629.2 9 bp overlap
Motif DE_72h DE_72h-Zic2_MA1629.2 9 bp overlap
Zic3 4 datasets
Motif DE_36h DE_36h-Zic3_MA0697.3 7 bp overlap
Motif DE_48h DE_48h-Zic3_MA0697.3 7 bp overlap
Motif DE_60h DE_60h-Zic3_MA0697.3 7 bp overlap
Motif DE_72h DE_72h-Zic3_MA0697.3 7 bp overlap