chr2 : 199,804,250 – 199,805,259
1,009 bp 97 TFs 0 linked genes
This 1.0 kb open chromatin element has no linked target genes and is bound by 97 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:199,799,250 – 199,810,259
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
97 transcription factors
Source
Cell type
ASCL1 1 dataset
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 123 bp overlap
Ahr::Arnt 1 dataset
Motif DE_36h DE_36h-AhrArnt_MA0006.2 5 bp overlap
BCOR 1 dataset
ChIP WA01 GSE104690.BCOR.WA01 259 bp overlap
BRD4 2 datasets
ChIP MPNST_PDJQ GSE62499.BRD4.MPNST_PDJQ 175 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 424 bp overlap
CTCF 32 datasets
ChIP A-673 ENCSR611JJS.CTCF.A-673 200 bp overlap
ChIP GM23338 ENCFF772DML 201 bp overlap
ChIP HEK293 ENCSR617IFZ.CTCF.HEK293 426 bp overlap
ChIP HUES-64 GSE97394.CTCF.HUES-64 303 bp overlap
ChIP Hep-G2 ENCSR000BIE.CTCF.Hep-G2 118 bp overlap
ChIP Hep-G2 ENCSR000DUG.CTCF.Hep-G2 96 bp overlap
ChIP IMR-90_Ctrl GSE125639.CTCF.IMR-90_Ctrl 187 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 135 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 342 bp overlap
ChIP anterior-temporal-cortex_adult GSE116825.CTCF.anterior-temporal-cortex_adult 193 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF267VHH 501 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF277CZQ 505 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF327VLN 505 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF373BUI 397 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF377YBQ 457 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF433UFM 545 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF442YDO 391 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF458OBF 511 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF478RRB 431 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF733NZH 451 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF835ZSJ 537 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF841TWE 471 bp overlap
ChIP endodermal cell ENCFF471YCZ 461 bp overlap
ChIP hiPSC_HUES9 GSE106870.CTCF.hiPSC_HUES9 118 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 151 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 147 bp overlap
ChIP leukemia GSE142161.CTCF.leukemia 179 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 109 bp overlap
ChIP primary-glioblastoma_G523 GSE121601.CTCF.primary-glioblastoma_G523 308 bp overlap
ChIP thyroid gland ENCFF163TUI 477 bp overlap
ChIP thyroid-gland ENCSR033KMZ.CTCF.thyroid-gland 257 bp overlap
ChIP thyroid-gland ENCSR145HBC.CTCF.thyroid-gland 271 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 388 bp overlap
DMRTA2 1 dataset
Motif DE_36h DE_36h-DMRTA2_MA1478.2 6 bp overlap
E2F6 1 dataset
Motif DE_36h DE_36h-E2F6_MA0471.3 8 bp overlap
EGR3 1 dataset
Motif DE_36h DE_36h-EGR3_MA0732.2 11 bp overlap
EGR4 1 dataset
Motif DE_36h DE_36h-EGR4_MA0733.2 11 bp overlap
ELF1 1 dataset
ChIP A-549 GSE122203.ELF1.A-549 111 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 735 bp overlap
ESR1 1 dataset
ChIP MCF-7_E2-ICI GSE67295.ESR1.MCF-7_E2-ICI 171 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 681 bp overlap
ChIP DE DE-FOXA2-2 747 bp overlap
FOXD2 1 dataset
Motif DE_36h DE_36h-FOXD2_MA0847.4 11 bp overlap
FOXE1 1 dataset
Motif DE_36h DE_36h-FOXE1_MA1487.3 12 bp overlap
FOXO6 1 dataset
Motif DE_36h DE_36h-FOXO6_MA0849.1 7 bp overlap
GATA2 1 dataset
Motif DE_36h DE_36h-GATA2_MA0036.4 7 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 673 bp overlap
ChIP DE DE-GATA4-2 614 bp overlap
Motif DE_36h DE_36h-GATA4_MA0482.3 8 bp overlap
GATA5 1 dataset
Motif DE_36h DE_36h-GATA5_MA0766.3 8 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 697 bp overlap
ChIP DE DE-GATA6-2 752 bp overlap
Motif DE_36h DE_36h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 872 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 892 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 1009 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 951 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 1009 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 990 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 665 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 246 bp overlap
Gata3 1 dataset
Motif DE_36h DE_36h-Gata3_MA0037.5 8 bp overlap
HDAC2 3 datasets
ChIP RH4_DMSO-6H GSE116344.HDAC2.RH4_DMSO-6H 310 bp overlap
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 414 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 206 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 295 bp overlap
HNRNPH1 1 dataset
ChIP Hep-G2 GSE120104.HNRNPH1.Hep-G2 307 bp overlap
IKZF2 1 dataset
Motif DE_36h DE_36h-IKZF2_MA2326.1 6 bp overlap
Irf1 1 dataset
Motif DE_36h DE_36h-Irf1_MA0050.4 11 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 390 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 422 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 306 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 566 bp overlap
KLF17 1 dataset
Motif DE_36h DE_36h-KLF17_MA1514.2 14 bp overlap
LEF1 1 dataset
ChIP hESC_WNT3A GSE64758.LEF1.hESC_WNT3A 244 bp overlap
MSANTD3 1 dataset
Motif DE_36h DE_36h-MSANTD3_MA1523.2 7 bp overlap
MYOD1 1 dataset
ChIP RH4 GSE83726.MYOD1.RH4 287 bp overlap
MYOG 1 dataset
ChIP RH4 GSE83726.MYOG.RH4 817 bp overlap
Mecom 1 dataset
Motif DE_36h DE_36h-Mecom_MA0029.2 11 bp overlap
NANOG 3 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 420 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 153 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 477 bp overlap
NFATC3 1 dataset
Motif DE_36h DE_36h-NFATC3_MA0625.3 6 bp overlap
NIPBL 2 datasets
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 347 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 249 bp overlap
NKX2-2 1 dataset
Motif DE_36h DE_36h-NKX2-2_MA1645.2 8 bp overlap
Nfat5 1 dataset
Motif DE_36h DE_36h-Nfat5_MA0606.3 8 bp overlap
Nfatc1 1 dataset
Motif DE_36h DE_36h-Nfatc1_MA0624.3 6 bp overlap
Nfatc2 1 dataset
Motif DE_36h DE_36h-Nfatc2_MA0152.3 8 bp overlap
PAX3-FOXO1 1 dataset
ChIP RH4 GSE140115.PAX3-FOXO1.RH4 282 bp overlap
POU1F1 1 dataset
Motif DE_36h DE_36h-POU1F1_MA0784.3 14 bp overlap
POU5F1 3 datasets
ChIP BG03 GSE21614.POU5F1.BG03 184 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 437 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 768 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 210 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 240 bp overlap
PRDM9 1 dataset
Motif DE_36h DE_36h-PRDM9_MA1723.2 20 bp overlap
RAD21 5 datasets
ChIP H1 ENCFF698EWO 241 bp overlap
ChIP HepG2 ENCFF906QIS 225 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 301 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 223 bp overlap
ChIP hiPSC_IIIB12 GSE106870.RAD21.hiPSC_IIIB12 188 bp overlap
RBPJ 1 dataset
Motif DE_36h DE_36h-RBPJ_MA1116.2 6 bp overlap
REL 1 dataset
Motif DE_36h DE_36h-REL_MA0101.1 10 bp overlap
REST 1 dataset
ChIP colorectal-cancer_CRC121_intact GSE112555.REST.colorectal-cancer_CRC121_intact 205 bp overlap
RUNX1T1 1 dataset
ChIP CD34 GSE80773.RUNX1T1.CD34 79 bp overlap
RUNX3 1 dataset
Motif DE_36h DE_36h-RUNX3_MA0684.3 8 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 219 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 458 bp overlap
SIN3A 4 datasets
ChIP WA01 ENCSR000EBO.SIN3A.WA01 306 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 162 bp overlap
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 141 bp overlap
ChIP hiPSC_IID12 GSE106870.SIN3A.hiPSC_IID12 196 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 622 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 870 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 700 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 645 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 383 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 699 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 919 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 253 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 760 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 598 bp overlap
SMARCB1 1 dataset
ChIP hiPSC GSE124903.SMARCB1.hiPSC 474 bp overlap
SMARCC1 5 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 693 bp overlap
ChIP TTC-549_Dox GSE71504.SMARCC1.TTC-549_Dox 203 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 637 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 205 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 348 bp overlap
SOX10 1 dataset
Motif DE_36h DE_36h-SOX10_MA0442.3 6 bp overlap
STAT1::STAT2 1 dataset
Motif DE_36h DE_36h-STAT1STAT2_MA0517.2 13 bp overlap
Stat2 1 dataset
Motif DE_36h DE_36h-Stat2_MA1623.2 10 bp overlap
T 3 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 210 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 303 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 283 bp overlap
TBX21 1 dataset
Motif DE_36h DE_36h-TBX21_MA0690.3 10 bp overlap
TP53 2 datasets
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 251 bp overlap
ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 312 bp overlap
TP63 9 datasets
ChIP JHU-029 GSE88859.TP63.JHU-029 138 bp overlap
ChIP MCF-10A_DCIS GSE72009.TP63.MCF-10A_DCIS 215 bp overlap
ChIP MCF-10A_Nutlin3A GSE111009.TP63.MCF-10A_Nutlin3A 274 bp overlap
ChIP SUIT-2 GSE115461.TP63.SUIT-2 249 bp overlap
ChIP keratinocyte GSE33571.TP63.keratinocyte 170 bp overlap
ChIP keratinocyte_D0 GSE59824.TP63.keratinocyte_D0 215 bp overlap
ChIP keratinocyte_D2 GSE59824.TP63.keratinocyte_D2 260 bp overlap
ChIP keratinocyte_D4 GSE59824.TP63.keratinocyte_D4 241 bp overlap
ChIP keratinocyte_D7 GSE59824.TP63.keratinocyte_D7 176 bp overlap
TP73_TA 1 dataset
ChIP SaOS-2 GSE15780.TP73_TA.SaOS-2 249 bp overlap
TRPS1 1 dataset
Motif DE_36h DE_36h-TRPS1_MA1970.2 8 bp overlap
Tbx6 1 dataset
Motif DE_36h DE_36h-Tbx6_MA1567.3 9 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 123 bp overlap
ZIC1 1 dataset
Motif DE_36h DE_36h-ZIC1_MA0696.1 14 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 459 bp overlap
ZKSCAN5 1 dataset
Motif DE_36h DE_36h-ZKSCAN5_MA1652.2 9 bp overlap
ZNF121 1 dataset
ChIP WTC11 ENCFF291API 90 bp overlap
ZNF257 1 dataset
Motif DE_36h DE_36h-ZNF257_MA1710.2 10 bp overlap
ZNF274 1 dataset
Motif DE_36h DE_36h-ZNF274_MA1592.2 12 bp overlap
ZNF324 1 dataset
Motif DE_36h DE_36h-ZNF324_MA1977.2 14 bp overlap
ZNF331 1 dataset
Motif DE_36h DE_36h-ZNF331_MA1726.2 10 bp overlap
ZNF335 2 datasets
ChIP HEK293 ENCFF784SLD 313 bp overlap
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 540 bp overlap
ZNF341 2 datasets
Motif DE_36h DE_36h-ZNF341_MA1655.2 8 bp overlap
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 326 bp overlap
ZNF418 1 dataset
Motif DE_36h DE_36h-ZNF418_MA1980.1 15 bp overlap
ZNF423 2 datasets
ChIP WTC11 ENCFF574PBR 317 bp overlap
ChIP WTC11 ENCFF574PBR 260 bp overlap
ZNF454 1 dataset
Motif DE_36h DE_36h-ZNF454_MA1712.2 17 bp overlap
ZNF530 2 datasets
Motif DE_36h DE_36h-ZNF530_MA1981.2 14 bp overlap
Motif DE_36h DE_36h-ZNF530_MA1981.2 14 bp overlap
ZNF534 1 dataset
ChIP HEK293T GSE78099.ZNF534.HEK293T 144 bp overlap
ZNF549 1 dataset
Motif DE_36h DE_36h-ZNF549_MA1728.2 8 bp overlap
ZNF75A 1 dataset
Motif DE_36h DE_36h-ZNF75A_MA2097.1 12 bp overlap
ZNF75D 1 dataset
Motif DE_36h DE_36h-ZNF75D_MA1601.2 12 bp overlap
ZNF770 3 datasets
ChIP HEK293 ENCFF468FCG 57 bp overlap
ChIP HEK293 GSE76494.ZNF770.HEK293 157 bp overlap
ChIP HEK293 ENCSR242BGR.ZNF770.HEK293 174 bp overlap
ZSCAN16 1 dataset
Motif DE_36h DE_36h-ZSCAN16_MA2100.1 18 bp overlap
Zfp335 1 dataset
Motif DE_36h DE_36h-Zfp335_MA2002.2 7 bp overlap
Zic1::Zic2 1 dataset
Motif DE_36h DE_36h-Zic1Zic2_MA1628.2 7 bp overlap
Zic2 1 dataset
Motif DE_36h DE_36h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif DE_36h DE_36h-Zic3_MA0697.3 7 bp overlap
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