chr2 : 101,145,590 – 101,145,800
210 bp 67 TFs 2 linked genes
This 210 bp open chromatin element is linked to TBC1D8 and TBC1D8-AS1 and is bound by 67 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
TBC1D8 5.6 kb Proximal Proximity
TBC1D8-AS1 5.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:101,140,590 – 101,150,800
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
67 transcription factors
Source
Cell type
AR 3 datasets
ChIP 22Rv1_pLKO GSE109748.AR.22Rv1_pLKO 74 bp overlap
ChIP LNCaP_SHFOXA1_R1881 GSE37345.AR.LNCaP_SHFOXA1_R1881 114 bp overlap
ChIP LNCaP_androgen-N_hypoxia-Y GSE114732.AR.LNCaP_androgen-N_hypoxia-Y 85 bp overlap
ARID1A 1 dataset
ChIP RMG-I GSE120058.ARID1A.RMG-I 210 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 210 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 210 bp overlap
ATF3 3 datasets
ChIP HCT-116_CAMP GSE74355.ATF3.HCT-116_CAMP 210 bp overlap
ChIP HCT-116_DMSO GSE74355.ATF3.HCT-116_DMSO 116 bp overlap
ChIP HCT-116_DMSO_KOATF3 GSE74355.ATF3.HCT-116_DMSO_KOATF3 130 bp overlap
BRD4 3 datasets
ChIP HCC1395_JQ1 GSE63581.BRD4.HCC1395_JQ1 185 bp overlap
ChIP SUM159PT_100nMtrametinib_4h GSE87418.BRD4.SUM159PT_100nMtrametinib_4h 210 bp overlap
ChIP SUM159PT_30nMbortezomib_8h GSE87418.BRD4.SUM159PT_30nMbortezomib_8h 210 bp overlap
CBX2 1 dataset
ChIP K-562 ENCSR000ATU.CBX2.K-562 210 bp overlap
CBX3 2 datasets
ChIP HCT-116 ENCSR000BUH.CBX3.HCT-116 210 bp overlap
ChIP HCT116 ENCFF947BOL 210 bp overlap
CEBPB 3 datasets
ChIP HCT-116 ENCSR000BSD.CEBPB.HCT-116 162 bp overlap
ChIP HCT116 ENCFF097OLY 210 bp overlap
ChIP HeLa-S3 ENCFF722WEG 210 bp overlap
CHD2 2 datasets
ChIP HeLa-S3 ENCFF078QRQ 210 bp overlap
ChIP HeLa-S3 ENCSR000ECP.CHD2.HeLa-S3 191 bp overlap
DAXX 2 datasets
ChIP PC-3 GSE68647.DAXX.PC-3 210 bp overlap
ChIP PC-3_DAXX GSE68647.DAXX.PC-3_DAXX 186 bp overlap
DEK 1 dataset
ChIP HeLa-S3 ENCSR219MKK.DEK.HeLa-S3 119 bp overlap
EP300 2 datasets
ChIP HeLa-S3 ENCFF089VPQ 210 bp overlap
ChIP HeLa-S3 ENCSR000ECV.EP300.HeLa-S3 186 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 177 bp overlap
FOS 3 datasets
ChIP CFPAC-1 GSE119930.FOS.CFPAC-1 170 bp overlap
ChIP HCT-116_A7A GSE152144.FOS.HCT-116_A7A 210 bp overlap
ChIP MCF-10A ENCSR000DON.FOS.MCF-10A 200 bp overlap
FOSL1 2 datasets
ChIP HCT-116 ENCSR000BTE.FOSL1.HCT-116 210 bp overlap
ChIP HCT116 ENCFF540ZXN 210 bp overlap
FOSL2 2 datasets
ChIP A-549 ENCSR000BQO.FOSL2.A-549 170 bp overlap
ChIP LPS141 GSE111253.FOSL2.LPS141 190 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-2 210 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 210 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 210 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 210 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 210 bp overlap
GTF2F1 1 dataset
ChIP HeLa-S3 ENCFF868VGE 210 bp overlap
HOXA10 1 dataset
ChIP HepG2 ENCFF422LBU 182 bp overlap
HOXB8 1 dataset
ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 98 bp overlap
HOXC6 1 dataset
ChIP 22Rv1 GSE129951.HOXC6.22Rv1 94 bp overlap
IKZF3 2 datasets
ChIP HEK293 ENCFF518OXG 210 bp overlap
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 161 bp overlap
IRF2 1 dataset
ChIP keratinocyte_DOX GSE135677.IRF2.keratinocyte_DOX 151 bp overlap
JUN 8 datasets
ChIP 786-O GSE86092.JUN.786-O 171 bp overlap
ChIP DE_D1 S08-DE-d1-JUN-exp1 210 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 210 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 210 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 144 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 210 bp overlap
ChIP HeLa-S3 ENCFF668QVP 210 bp overlap
ChIP MCF10A-Er-Src_EtOH GSE115597.JUN.MCF10A-Er-Src_EtOH 130 bp overlap
JUND 7 datasets
ChIP A-549 ENCSR000BRF.JUND.A-549 114 bp overlap
ChIP H1 ENCFF468JZD 210 bp overlap
ChIP HCT-116 ENCSR000BSA.JUND.HCT-116 208 bp overlap
ChIP HCT116 ENCFF748ZQX 210 bp overlap
ChIP HeLa-S3 ENCSR000EDH.JUND.HeLa-S3 138 bp overlap
ChIP WA01 ENCSR000EBZ.JUND.WA01 185 bp overlap
ChIP WA01 ENCSR000BKP.JUND.WA01 155 bp overlap
L3MBTL2 1 dataset
ChIP K-562 GSE28162.L3MBTL2.K-562 187 bp overlap
MAML1 1 dataset
ChIP SCC_4h GSE156486.MAML1.SCC_4h 178 bp overlap
MAX 3 datasets
ChIP HCT-116 ENCSR000BSH.MAX.HCT-116 160 bp overlap
ChIP HCT116 ENCFF810LEN 210 bp overlap
ChIP HeLa-S3 ENCSR000ECN.MAX.HeLa-S3 186 bp overlap
MYC 1 dataset
ChIP MCF-10A ENCSR000DOS.MYC.MCF-10A 142 bp overlap
NANOG 6 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 210 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 210 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 210 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 210 bp overlap
ChIP hESC GSE18292.NANOG.hESC 157 bp overlap
ChIP hESC GSE20650.NANOG.hESC 154 bp overlap
NELFE 1 dataset
ChIP HeLa_DOX GSE125534.NELFE.HeLa_DOX 186 bp overlap
NFKB1 1 dataset
ChIP MCF10A-Er-Src_TAM GSE115597.NFKB1.MCF10A-Er-Src_TAM 148 bp overlap
NKX2-1 2 datasets
ChIP NCI-H2087 GSE39998.NKX2-1.NCI-H2087 172 bp overlap
ChIP NCI-H3122 GSE39998.NKX2-1.NCI-H3122 175 bp overlap
NR2E3 1 dataset
ChIP A549 ENCFF833WDR 210 bp overlap
NR3C1 2 datasets
ChIP A-549 ENCSR000BHF.NR3C1.A-549 178 bp overlap
ChIP HeLa-B2_P65KD_TA_TNFA GSE24518.NR3C1.HeLa-B2_P65KD_TA_TNFA 95 bp overlap
PAF1 1 dataset
ChIP HCT-116_ab20662 GSE97527.PAF1.HCT-116_ab20662 210 bp overlap
PDX1 2 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 120 bp overlap
ChIP islet ERP001456.PDX1.islet 168 bp overlap
PHIP 1 dataset
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 210 bp overlap
POLR2A 2 datasets
ChIP Panc1 ENCFF290KAB 210 bp overlap
ChIP gastrocnemius medialis ENCFF145VIB 210 bp overlap
PRDM1 1 dataset
ChIP HEK293 ENCFF302TBP 210 bp overlap
PRDM4 2 datasets
ChIP HEK293 ENCFF069PHD 157 bp overlap
ChIP HEK293 ENCSR443MVV.PRDM4.HEK293 210 bp overlap
RAD21 1 dataset
ChIP HCT116 ENCFF568PEO 210 bp overlap
RBM22 1 dataset
ChIP HepG2 ENCFF292RVQ 210 bp overlap
RELA 2 datasets
ChIP MCF-7_IL1b_45m GSE67295.RELA.MCF-7_IL1b_45m 98 bp overlap
ChIP aortic-endothelial-cell_IL1B_D9 GSE139377.RELA.aortic-endothelial-cell_IL1B_D9 172 bp overlap
SAP130 1 dataset
ChIP HepG2 ENCFF892EHZ 210 bp overlap
SCRT2 2 datasets
ChIP HEK293 ENCFF711QQB 126 bp overlap
ChIP HEK293 ENCFF711QQB 135 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 210 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 210 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 210 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 210 bp overlap
SMAD3 1 dataset
ChIP HCC1954_TGFb GSE104760.SMAD3.HCC1954_TGFb 183 bp overlap
SMARCA4 10 datasets
ChIP A-549_AG15677 GSE132290.SMARCA4.A-549_AG15677 122 bp overlap
ChIP A-549_AG15678 GSE132290.SMARCA4.A-549_AG15678 65 bp overlap
ChIP A-549_AG15720 GSE132290.SMARCA4.A-549_AG15720 144 bp overlap
ChIP A-549_AG15721 GSE132290.SMARCA4.A-549_AG15721 128 bp overlap
ChIP A-549_AG15722 GSE132290.SMARCA4.A-549_AG15722 101 bp overlap
ChIP A-549_AG15725 GSE132290.SMARCA4.A-549_AG15725 136 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 207 bp overlap
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 210 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 58 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 200 bp overlap
SMARCC1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 210 bp overlap
SMC1A 1 dataset
ChIP primary-epidermal-keratinocyte GSE85526.SMC1A.primary-epidermal-keratinocyte 166 bp overlap
SMC3 1 dataset
ChIP HeLa-S3 ENCSR000ECS.SMC3.HeLa-S3 150 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_shSNAI2 GSE137168.SNAI2.SMS-CTR_shSNAI2 134 bp overlap
SOX4 1 dataset
ChIP MDA-MB-231 GSE104760.SOX4.MDA-MB-231 153 bp overlap
SP1 2 datasets
ChIP HCT-116 ENCSR000BSF.SP1.HCT-116 210 bp overlap
ChIP HCT116 ENCFF800LBN 210 bp overlap
TBP 1 dataset
ChIP HeLa-S3 ENCSR000EDD.TBP.HeLa-S3 172 bp overlap
TCF21 1 dataset
ChIP HCASMC GSE124011.TCF21.HCASMC 113 bp overlap
TCF7L2 1 dataset
ChIP LNCaP GSE51621.TCF7L2.LNCaP 210 bp overlap
ZIC2 2 datasets
ChIP HCT-116_WT GSE127960.ZIC2.HCT-116_WT 210 bp overlap
ChIP HEK293 ENCFF033NQQ 210 bp overlap
ZIC5 1 dataset
ChIP HCT-116_WT-FL290 GSE127960.ZIC5.HCT-116_WT-FL290 159 bp overlap
ZKSCAN5 1 dataset
ChIP HEK293T GSE78099.ZKSCAN5.HEK293T 75 bp overlap
ZNF10 1 dataset
ChIP HEK293 ENCSR019WUS.ZNF10.HEK293 210 bp overlap
ZNF134 1 dataset
ChIP HEK293 GSE76494.ZNF134.HEK293 145 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 210 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 141 bp overlap
ZNF660 1 dataset
ChIP HEK293 ENCSR283DOU.ZNF660.HEK293 154 bp overlap
ZSCAN5C 1 dataset
ChIP HEK293 ENCSR731AGO.ZSCAN5C.HEK293 210 bp overlap
Huangfu Lab · Publications · Resources · Contact