chr2 : 58,913,057 – 58,913,586

529 bp 96 TFs 0 linked genes

This 529 bp open chromatin element has no linked target genes and is bound by 96 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

96 transcription factors

ALX3 1 dataset

Motif DE_12h DE_12h-ALX3_MA0634.2 6 bp overlap

ASXL3 2 datasets

ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 529 bp overlap

ChIP NCI-H1963_Ab2 GSE145028.ASXL3.NCI-H1963_Ab2 230 bp overlap

BCOR 2 datasets

ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 231 bp overlap

ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 276 bp overlap

BRD3 1 dataset

ChIP HEK293T GSE39579.BRD3.HEK293T 130 bp overlap

BRD4 5 datasets

ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 332 bp overlap

ChIP cortical-interneuron_KCl-pos GSE117508.BRD4.cortical-interneuron_KCl-pos 314 bp overlap

ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_KCl-pos_JQ1-neg 435 bp overlap

ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 343 bp overlap

ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 340 bp overlap

CBX8 1 dataset

ChIP K-562 ENCSR000ATW.CBX8.K-562 289 bp overlap

CHD7 1 dataset

ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 527 bp overlap

CTCF 1 dataset

ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 216 bp overlap

DRGX 1 dataset

Motif DE_12h DE_12h-DRGX_MA1481.2 6 bp overlap

EMX1 1 dataset

Motif DE_12h DE_12h-EMX1_MA0612.3 6 bp overlap

EMX2 1 dataset

Motif DE_12h DE_12h-EMX2_MA0886.2 6 bp overlap

EN1 1 dataset

Motif DE_12h DE_12h-EN1_MA0027.3 6 bp overlap

EP300 2 datasets

ChIP neural ENCSR843ZUP.EP300.neural 505 bp overlap

ChIP neural cell ENCFF442QNK 468 bp overlap

EVX1 1 dataset

Motif DE_12h DE_12h-EVX1_MA0887.2 6 bp overlap

EVX2 1 dataset

Motif DE_12h DE_12h-EVX2_MA0888.2 6 bp overlap

EZH2 1 dataset

ChIP neural progenitor cell ENCFF018MKA 529 bp overlap

FEZF1 3 datasets

ChIP HEK293 ENCFF528YED 272 bp overlap

ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 444 bp overlap

ChIP HEK293 GSE76494.FEZF1.HEK293 246 bp overlap

FOXA1 5 datasets

ChIP 22Rv1_CST_Crispr GSE123618.FOXA1.22Rv1_CST_Crispr 60 bp overlap

ChIP 22Rv1_CST_Crispr-36 GSE123618.FOXA1.22Rv1_CST_Crispr-36 123 bp overlap

ChIP 22Rv1_i176m_CST GSE123618.FOXA1.22Rv1_i176m_CST 101 bp overlap

ChIP 22Rv1_r261g_CST GSE123618.FOXA1.22Rv1_r261g_CST 92 bp overlap

ChIP LNCaP_FENG_shFOXA1_Ethanol GSE128883.FOXA1.LNCaP_FENG_shFOXA1_Ethanol 181 bp overlap

FOXA2 1 dataset

ChIP pancreas_CARN1618 ERP008682.FOXA2.pancreas_CARN1618 66 bp overlap

FOXB1 1 dataset

Motif DE_12h DE_12h-FOXB1_MA0845.1 11 bp overlap

GSX1 1 dataset

Motif DE_12h DE_12h-GSX1_MA0892.2 6 bp overlap

GSX2 1 dataset

Motif DE_12h DE_12h-GSX2_MA0893.3 7 bp overlap

HOXA1 1 dataset

Motif DE_12h DE_12h-HOXA1_MA1495.2 6 bp overlap

HOXA2 1 dataset

Motif DE_12h DE_12h-HOXA2_MA0900.3 6 bp overlap

HOXA3 1 dataset

Motif DE_12h DE_12h-HOXA3_MA2119.1 7 bp overlap

HOXA6 1 dataset

Motif DE_12h DE_12h-HOXA6_MA1497.2 7 bp overlap

HOXB1 1 dataset

Motif DE_12h DE_12h-HOXB1_MA2093.1 7 bp overlap

HOXB13 1 dataset

ChIP prostate_P7_T GSE130408.HOXB13.prostate_P7_T 123 bp overlap

HOXB2 1 dataset

Motif DE_12h DE_12h-HOXB2_MA0902.3 6 bp overlap

HOXB3 1 dataset

Motif DE_12h DE_12h-HOXB3_MA0903.2 6 bp overlap

HOXB5 1 dataset

Motif DE_12h DE_12h-HOXB5_MA0904.3 6 bp overlap

HOXB6 1 dataset

Motif DE_12h DE_12h-HOXB6_MA1500.2 7 bp overlap

HOXB7 1 dataset

Motif DE_12h DE_12h-HOXB7_MA1501.2 7 bp overlap

HOXB8 1 dataset

Motif DE_12h DE_12h-HOXB8_MA1502.2 7 bp overlap

HOXC8 1 dataset

Motif DE_12h DE_12h-HOXC8_MA1505.2 6 bp overlap

HOXD8 1 dataset

Motif DE_12h DE_12h-HOXD8_MA0910.3 7 bp overlap

IKZF3 1 dataset

ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 343 bp overlap

ISX 1 dataset

Motif DE_12h DE_12h-ISX_MA0654.2 6 bp overlap

LHX5 1 dataset

Motif DE_12h DE_12h-LHX5_MA1519.2 7 bp overlap

Lhx4 1 dataset

Motif DE_12h DE_12h-Lhx4_MA0704.2 6 bp overlap

Lhx8 1 dataset

Motif DE_12h DE_12h-Lhx8_MA0705.2 6 bp overlap

MEOX1 1 dataset

Motif DE_12h DE_12h-MEOX1_MA0661.2 7 bp overlap

MEOX2 1 dataset

Motif DE_12h DE_12h-MEOX2_MA0706.2 7 bp overlap

MITF 4 datasets

ChIP 501-mel GSE137522.MITF.501-mel 108 bp overlap

ChIP 501-mel_20ng_K243R GSE137522.MITF.501-mel_20ng_K243R 115 bp overlap

ChIP 501-mel_K243Q GSE137522.MITF.501-mel_K243Q 100 bp overlap

ChIP K-562 ENCSR797SWM.MITF.K-562 126 bp overlap

MIXL1 1 dataset

Motif DE_12h DE_12h-MIXL1_MA0662.2 6 bp overlap

MNX1 1 dataset

Motif DE_12h DE_12h-MNX1_MA0707.3 6 bp overlap

MYOD1 1 dataset

ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 181 bp overlap

NANOG 1 dataset

ChIP HUES-8 GSE109524.NANOG.HUES-8 519 bp overlap

NKX6-2 1 dataset

Motif DE_12h DE_12h-NKX6-2_MA0675.2 6 bp overlap

NRF1 1 dataset

ChIP K-562 ENCSR837EYC.NRF1.K-562 51 bp overlap

OSR2 3 datasets

ChIP HEK293 ENCFF875BDB 410 bp overlap

ChIP HEK293 ENCSR324LTM.OSR2.HEK293 314 bp overlap

ChIP HEK293 GSE76494.OSR2.HEK293 177 bp overlap

PDX1 1 dataset

Motif DE_12h DE_12h-PDX1_MA0132.3 6 bp overlap

PKNOX2 1 dataset

Motif DE_12h DE_12h-PKNOX2_MA0783.1 12 bp overlap

POLR2A 1 dataset

ChIP neural cell ENCFF604SPB 201 bp overlap

POU5F1 4 datasets

ChIP HUES-8 GSE109524.POU5F1.HUES-8 343 bp overlap

ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 399 bp overlap

ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 424 bp overlap

ChIP hiPSC GSE56567.POU5F1.hiPSC 342 bp overlap

POU6F1 1 dataset

Motif DE_12h DE_12h-POU6F1_MA0628.2 6 bp overlap

POU6F2 1 dataset

Motif DE_12h DE_12h-POU6F2_MA0793.2 9 bp overlap

PRRX1 1 dataset

Motif DE_12h DE_12h-PRRX1_MA0716.2 6 bp overlap

RAD21 3 datasets

ChIP HAP1 GSE152721.RAD21.HAP1 275 bp overlap

ChIP neural ENCSR198ZYJ.RAD21.neural 472 bp overlap

ChIP neural cell ENCFF564MOT 258 bp overlap

RAX2 1 dataset

Motif DE_12h DE_12h-RAX2_MA0717.2 6 bp overlap

REST 3 datasets

ChIP neural ENCSR000BTV.REST.neural 529 bp overlap

ChIP neural cell ENCFF882LXX 448 bp overlap

ChIP neural cell ENCFF882LXX 454 bp overlap

RNF2 1 dataset

ChIP SYO-1_shRING1A-B GSE139053.RNF2.SYO-1_shRING1A-B 372 bp overlap

SHOX 1 dataset

Motif DE_12h DE_12h-SHOX_MA0630.2 6 bp overlap

SMARCA2 2 datasets

ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 402 bp overlap

ChIP NPC_K755R-siCT GSE122631.SMARCA2.NPC_K755R-siCT 315 bp overlap

SMARCA4 6 datasets

ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 467 bp overlap

ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 239 bp overlap

ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 300 bp overlap

ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 515 bp overlap

ChIP hiPSC GSE124903.SMARCA4.hiPSC 529 bp overlap

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 497 bp overlap

SMARCB1 3 datasets

ChIP hiPSC GSE124903.SMARCB1.hiPSC 529 bp overlap

ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 109 bp overlap

ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 276 bp overlap

SMARCC1 3 datasets

ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 392 bp overlap

ChIP hiPSC GSE124903.SMARCC1.hiPSC 455 bp overlap

ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 307 bp overlap

SMC3 2 datasets

ChIP neural ENCSR404BPV.SMC3.neural 529 bp overlap

ChIP neural cell ENCFF795YGY 424 bp overlap

SOX10 1 dataset

Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap

SOX2 6 datasets

ChIP HCC95 GSE137459.SOX2.HCC95 264 bp overlap

ChIP HNSC GSE69479.SOX2.HNSC 529 bp overlap

ChIP LK2_DNp63 GSE137459.SOX2.LK2_DNp63 370 bp overlap

ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 440 bp overlap

ChIP NCI-H520 GSE137459.SOX2.NCI-H520 347 bp overlap

ChIP hiPSC GSE56567.SOX2.hiPSC 318 bp overlap

SP7 2 datasets

ChIP HEK293 ENCFF733RBE 278 bp overlap

ChIP HEK293 ENCSR468IJT.SP7.HEK293 358 bp overlap

STAT3 3 datasets

Motif DE_12h DE_12h-STAT3_MA0144.3 9 bp overlap

ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 204 bp overlap

ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 185 bp overlap

Shox2 1 dataset

Motif DE_12h DE_12h-Shox2_MA0720.2 6 bp overlap

Sox11 1 dataset

Motif DE_12h DE_12h-Sox11_MA0869.3 8 bp overlap

Sox6 1 dataset

Motif DE_12h DE_12h-Sox6_MA0515.1 10 bp overlap

Sox7 1 dataset

Motif DE_12h DE_12h-Sox7_MA2095.1 10 bp overlap

TAF1 1 dataset

ChIP neural ENCSR000BTX.TAF1.neural 277 bp overlap

TGIF1 1 dataset

Motif DE_12h DE_12h-TGIF1_MA0796.1 12 bp overlap

TGIF2 1 dataset

Motif DE_12h DE_12h-TGIF2_MA0797.1 12 bp overlap

TGIF2LY 1 dataset

Motif DE_12h DE_12h-TGIF2LY_MA1572.1 12 bp overlap

TLX2 1 dataset

Motif DE_12h DE_12h-TLX2_MA1577.2 6 bp overlap

TP53 1 dataset

ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 249 bp overlap

UNCX 1 dataset

Motif DE_12h DE_12h-UNCX_MA0721.2 6 bp overlap

VAX2 1 dataset

Motif DE_12h DE_12h-VAX2_MA0723.3 6 bp overlap

YY1 1 dataset

ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 232 bp overlap

ZBTB44 1 dataset

ChIP HEK293 ENCSR076STQ.ZBTB44.HEK293 302 bp overlap

ZBTB6 2 datasets

ChIP HEK293 ENCSR619OUC.ZBTB6.HEK293 322 bp overlap

ChIP HEK293 GSE76494.ZBTB6.HEK293 211 bp overlap

ZNF16 1 dataset

Motif DE_12h DE_12h-ZNF16_MA1654.2 21 bp overlap

ZNF189 2 datasets

ChIP HEK293 ENCFF638TIB 275 bp overlap

ChIP HEK293 ENCSR163RYW.ZNF189.HEK293 302 bp overlap

ZNF341 1 dataset

ChIP HEK293 GSE76494.ZNF341.HEK293 131 bp overlap

ZNF35 1 dataset

ChIP HEK293 GSE76494.ZNF35.HEK293 261 bp overlap

ZNF398 2 datasets

ChIP HEK293 ENCFF184XEW 236 bp overlap

ChIP HEK293 ENCSR676ZEF.ZNF398.HEK293 186 bp overlap

ZSCAN30 2 datasets

ChIP HEK293 ENCFF082YBI 337 bp overlap

ChIP HEK293 ENCSR768VNZ.ZSCAN30.HEK293 294 bp overlap

Zic1::Zic2 1 dataset

Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap

Zic3 1 dataset

Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap

mix-a 1 dataset

Motif DE_12h DE_12h-mix-a_MA0621.2 7 bp overlap