chr1 : 3,101,124 3,101,806
682 bp 77 TFs 0 linked genes
This 682 bp open chromatin element has no linked target genes and is bound by 77 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:3,096,124 – 3,106,806
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
77 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP HeLa GSE40632.AFF4.HeLa 189 bp overlap
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 421 bp overlap
Arid3a 1 dataset
Motif DE_72h DE_72h-Arid3a_MA0151.1 6 bp overlap
BRD4 4 datasets
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 682 bp overlap
ChIP retina_AB1-FW23 GSE86981.BRD4.retina_AB1-FW23 612 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 149 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 330 bp overlap
CDK9 1 dataset
ChIP HCT-116 GSE72622.CDK9.HCT-116 171 bp overlap
CREBBP 1 dataset
ChIP MCF-7 ERP000901.CREBBP.MCF-7 134 bp overlap
CTCF 18 datasets
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 236 bp overlap
ChIP Hep-G2 ENCSR000BIE.CTCF.Hep-G2 102 bp overlap
ChIP HepG2 ENCFF757EKU 351 bp overlap
ChIP MCF-7 ENCFF198DQX 231 bp overlap
ChIP MCF-7 ENCFF494VXA 231 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 124 bp overlap
ChIP T-47D_Y537S GSE148277.CTCF.T-47D_Y537S 235 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 94 bp overlap
ChIP ascending aorta ENCFF451CCT 411 bp overlap
ChIP ascending-aorta ENCSR846JKO.CTCF.ascending-aorta 336 bp overlap
ChIP heart ENCSR232OFD.CTCF.heart 252 bp overlap
ChIP heart left ventricle ENCFF354HOQ 461 bp overlap
ChIP heart left ventricle ENCFF548XHH 381 bp overlap
ChIP heart_left-ventricle ENCSR791AYW.CTCF.heart_left-ventricle 319 bp overlap
ChIP heart_left-ventricle ENCSR718SDR.CTCF.heart_left-ventricle 202 bp overlap
ChIP nerve_tibial ENCSR822PJT.CTCF.nerve_tibial 245 bp overlap
ChIP pancreas_body ENCSR408XTO.CTCF.pancreas_body 203 bp overlap
ChIP prostate_gland ENCSR720USO.CTCF.prostate_gland 255 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 313 bp overlap
DNMT3B 3 datasets
ChIP HUES-8 GSE99346.DNMT3B.HUES-8 500 bp overlap
ChIP HUES-8_TripleKO-TET1-2-3 GSE99346.DNMT3B.HUES-8_TripleKO-TET1-2-3 78 bp overlap
ChIP HUES-8_TripleKO-TET1-2-3 GSE99346.DNMT3B.HUES-8_TripleKO-TET1-2-3 529 bp overlap
ESR1 2 datasets
ChIP MCF-7_PaPE-1_OA GSE93510.ESR1.MCF-7_PaPE-1_OA 354 bp overlap
ChIP MCF-7_SIGATA_E2 GSE40129.ESR1.MCF-7_SIGATA_E2 145 bp overlap
EZH2 6 datasets
ChIP A-1847 GSE95643.EZH2.A-1847 220 bp overlap
ChIP A-673 ENCSR179SAO.EZH2.A-673 672 bp overlap
ChIP PC-3 ENCFF855OUB 530 bp overlap
ChIP PC-3 ENCFF928VSN 485 bp overlap
ChIP SU-DHL-6 GSE134136.EZH2.SU-DHL-6 305 bp overlap
ChIP SU-DHL-6 GSE134136.EZH2.SU-DHL-6 169 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 315 bp overlap
ChIP DE DE-FOXA2-2 346 bp overlap
GATA2 2 datasets
ChIP LNCaP GSE38391.GATA2.LNCaP 192 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 192 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 458 bp overlap
ChIP DE DE-GATA4-2 522 bp overlap
ChIP foregut GSE117136.GATA4.foregut 350 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 393 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 450 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 381 bp overlap
ChIP DE DE-GATA6-2 516 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 419 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 459 bp overlap
ChIP foregut GSE117136.GATA6.foregut 388 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 319 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 259 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 295 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 386 bp overlap
GLIS1 1 dataset
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 251 bp overlap
GLIS2 1 dataset
ChIP HEK293 ENCSR535DIA.GLIS2.HEK293 313 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 193 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 290 bp overlap
HSF1 1 dataset
ChIP MCF-7_hyperthermia-15min GSE137558.HSF1.MCF-7_hyperthermia-15min 155 bp overlap
JUN 1 dataset
ChIP 786-O GSE86092.JUN.786-O 343 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 145 bp overlap
MAX 2 datasets
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 309 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 389 bp overlap
MEIS1 1 dataset
Motif DE_72h DE_72h-MEIS1_MA0498.3 5 bp overlap
MEIS2 2 datasets
Motif DE_72h DE_72h-MEIS2_MA0774.1 8 bp overlap
Motif DE_72h DE_72h-MEIS2_MA1640.2 9 bp overlap
MYCN 1 dataset
ChIP LNCaP_DHT GSE117304.MYCN.LNCaP_DHT 296 bp overlap
PATZ1 1 dataset
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 208 bp overlap
PBX3 1 dataset
Motif DE_72h DE_72h-PBX3_MA1114.2 11 bp overlap
PDX1 3 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 195 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 160 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 274 bp overlap
PKNOX1 2 datasets
Motif DE_72h DE_72h-PKNOX1_MA0782.3 10 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 210 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 187 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 282 bp overlap
RAD21 6 datasets
ChIP HAP1 GSE152721.RAD21.HAP1 285 bp overlap
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 626 bp overlap
ChIP Hep-G2 ENCSR054FKH.RAD21.Hep-G2 110 bp overlap
ChIP MCF-7 ENCSR703TNG.RAD21.MCF-7 129 bp overlap
ChIP MCF-7 ERP000209.RAD21.MCF-7 123 bp overlap
ChIP MCF-7_E2 ERP000209.RAD21.MCF-7_E2 120 bp overlap
RARA 1 dataset
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 337 bp overlap
RBPJ 1 dataset
Motif DE_72h DE_72h-RBPJ_MA1116.2 6 bp overlap
REST 3 datasets
ChIP neural ENCSR000BTV.REST.neural 166 bp overlap
ChIP neural cell ENCFF882LXX 445 bp overlap
ChIP neural cell ENCFF882LXX 436 bp overlap
SIRT6 1 dataset
ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 140 bp overlap
SMAD2 1 dataset
Motif DE_72h DE_72h-SMAD2_MA1964.2 6 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 513 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 412 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 453 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 141 bp overlap
SMARCA4 3 datasets
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 409 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 591 bp overlap
ChIP TTC-549_Dox GSE71504.SMARCA4.TTC-549_Dox 157 bp overlap
SMARCC1 2 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 312 bp overlap
ChIP TTC-549_Dox GSE71504.SMARCC1.TTC-549_Dox 153 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 341 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 518 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 296 bp overlap
SOX21 1 dataset
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 400 bp overlap
SPI1 1 dataset
ChIP primary-neutrophil_donorF GSE128834.SPI1.primary-neutrophil_donorF 153 bp overlap
SREBP2 1 dataset
ChIP HCC70 GSE126380.SREBP2.HCC70 281 bp overlap
SS18 3 datasets
ChIP Aska-SS GSE108025.SS18.Aska-SS 606 bp overlap
ChIP Aska-SS_BAF47KO1 GSE108025.SS18.Aska-SS_BAF47KO1 604 bp overlap
ChIP SYO-1 GSE108025.SS18.SYO-1 447 bp overlap
SS18-SSX 2 datasets
ChIP fibroblast_78aa-SSX-Tail GSE139053.SS18-SSX.fibroblast_78aa-SSX-Tail 250 bp overlap
ChIP fibroblast_W164A GSE139053.SS18-SSX.fibroblast_W164A 380 bp overlap
STAG1 2 datasets
ChIP Hep-G2 ENCSR167MTG.STAG1.Hep-G2 121 bp overlap
ChIP MCF-7 ERP000209.STAG1.MCF-7 185 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 263 bp overlap
SUZ12 1 dataset
ChIP Aska-SS GSE108025.SUZ12.Aska-SS 314 bp overlap
Smad4 1 dataset
Motif DE_72h DE_72h-Smad4_MA1153.2 7 bp overlap
Sox6 1 dataset
Motif DE_72h DE_72h-Sox6_MA0515.1 10 bp overlap
TFAP2A 1 dataset
Motif DE_72h DE_72h-TFAP2A_MA0810.2 11 bp overlap
TFAP2B 1 dataset
Motif DE_72h DE_72h-TFAP2B_MA0811.2 11 bp overlap
TFAP2C 4 datasets
Motif DE_72h DE_72h-TFAP2C_MA0524.3 11 bp overlap
ChIP MCF-7_E2 GSE23852.TFAP2C.MCF-7_E2 181 bp overlap
ChIP MCF-7_ETOH GSE23852.TFAP2C.MCF-7_ETOH 210 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 481 bp overlap
TFAP2E 1 dataset
Motif DE_72h DE_72h-TFAP2E_MA1569.2 9 bp overlap
TP63 2 datasets
ChIP breast-organoid GSE113909.TP63.breast-organoid 258 bp overlap
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 210 bp overlap
TRIM28 1 dataset
ChIP AF22 GSE84259.TRIM28.AF22 412 bp overlap
UBTF 1 dataset
ChIP K-562 ENCSR000EFZ.UBTF.K-562 115 bp overlap
ZFP42 1 dataset
Motif DE_72h DE_72h-ZFP42_MA1651.2 13 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 498 bp overlap
ZNF143 1 dataset
Motif DE_72h DE_72h-ZNF143_MA0088.2 16 bp overlap
ZNF454 1 dataset
Motif DE_72h DE_72h-ZNF454_MA1712.2 17 bp overlap
ZNF75A 1 dataset
Motif DE_72h DE_72h-ZNF75A_MA2097.1 12 bp overlap
ZNF75D 1 dataset
Motif DE_72h DE_72h-ZNF75D_MA1601.2 12 bp overlap
ZSCAN22 1 dataset
ChIP HEK293 GSE76494.ZSCAN22.HEK293 212 bp overlap
ZSCAN31 1 dataset
Motif DE_72h DE_72h-ZSCAN31_MA1722.2 18 bp overlap
Zfp335 1 dataset
Motif DE_72h DE_72h-Zfp335_MA2002.2 7 bp overlap