chr2 : 40,225,398 40,226,238
840 bp 89 TFs 0 linked genes
This 840 bp open chromatin element has no linked target genes and is bound by 89 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:40,220,398 – 40,231,238
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
89 transcription factors
Source
Cell type
BARX1 1 dataset
Motif DE_36h DE_36h-BARX1_MA0875.2 6 bp overlap
BRD3 1 dataset
ChIP HUVEC-C GSE60171.BRD3.HUVEC-C 238 bp overlap
BRD4 3 datasets
ChIP SUM159PT_100nMtrametinib_72h GSE87418.BRD4.SUM159PT_100nMtrametinib_72h 91 bp overlap
ChIP cortical-interneuron_KCl-pos GSE117508.BRD4.cortical-interneuron_KCl-pos 154 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 417 bp overlap
BSX 1 dataset
Motif DE_36h DE_36h-BSX_MA0876.2 6 bp overlap
CDK8 1 dataset
ChIP leiomyoma_PT886 GSE128230.CDK8.leiomyoma_PT886 99 bp overlap
CEBPA 3 datasets
ChIP SGBS GSE41629.CEBPA.SGBS 118 bp overlap
ChIP THP-1_1-25D_24h GSE124032.CEBPA.THP-1_1-25D_24h 79 bp overlap
ChIP THP-1_EtOH_24h GSE124032.CEBPA.THP-1_EtOH_24h 114 bp overlap
CEBPB 1 dataset
ChIP HFOB_DIFF GSE82295.CEBPB.HFOB_DIFF 268 bp overlap
CTCF 1 dataset
ChIP GSC23 GSE139416.CTCF.GSC23 158 bp overlap
DBP 1 dataset
Motif DE_36h DE_36h-DBP_MA0639.2 10 bp overlap
DLX1 1 dataset
Motif DE_36h DE_36h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_36h DE_36h-DLX6_MA0882.2 6 bp overlap
Dlx3 1 dataset
Motif DE_36h DE_36h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_36h DE_36h-Dlx4_MA0881.2 6 bp overlap
EN2 1 dataset
Motif DE_36h DE_36h-EN2_MA0642.3 7 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 225 bp overlap
EP300 1 dataset
ChIP neural ENCSR843ZUP.EP300.neural 464 bp overlap
FOXA1 1 dataset
Motif DE_36h DE_36h-FOXA1_MA0148.5 8 bp overlap
FOXA2 5 datasets
ChIP BJ1-hTERT GSE90454.FOXA2.BJ1-hTERT 275 bp overlap
ChIP BJ1-hTERT_CDT1 GSE92491.FOXA2.BJ1-hTERT_CDT1 348 bp overlap
ChIP DE DE-FOXA2-1 599 bp overlap
ChIP DE DE-FOXA2-2 606 bp overlap
ChIP KerCT GSE90454.FOXA2.KerCT 256 bp overlap
FOXB1 1 dataset
Motif DE_36h DE_36h-FOXB1_MA0845.1 11 bp overlap
FOXC1 1 dataset
Motif DE_36h DE_36h-FOXC1_MA0032.2 11 bp overlap
FOXF2 1 dataset
Motif DE_36h DE_36h-FOXF2_MA0030.2 9 bp overlap
FOXG1 1 dataset
Motif DE_36h DE_36h-FOXG1_MA0613.1 8 bp overlap
FOXK1 1 dataset
Motif DE_36h DE_36h-FOXK1_MA0852.3 7 bp overlap
FOXK2 1 dataset
Motif DE_36h DE_36h-FOXK2_MA1103.3 7 bp overlap
FOXL1 1 dataset
Motif DE_36h DE_36h-FOXL1_MA0033.2 7 bp overlap
FOXO4 1 dataset
Motif DE_36h DE_36h-FOXO4_MA0848.1 7 bp overlap
FOXO6 1 dataset
Motif DE_36h DE_36h-FOXO6_MA0849.1 7 bp overlap
FOXP3 1 dataset
Motif DE_36h DE_36h-FOXP3_MA0850.1 7 bp overlap
Foxf1 1 dataset
Motif DE_36h DE_36h-Foxf1_MA1606.2 7 bp overlap
Foxj2 1 dataset
Motif DE_36h DE_36h-Foxj2_MA0614.1 8 bp overlap
Foxj3 1 dataset
Motif DE_36h DE_36h-Foxj3_MA0851.2 9 bp overlap
Foxo1 1 dataset
Motif DE_36h DE_36h-Foxo1_MA0480.3 7 bp overlap
Foxo3 1 dataset
Motif DE_36h DE_36h-Foxo3_MA0157.4 7 bp overlap
GATA4 3 datasets
ChIP BJ1-hTERT GSE92491.GATA4.BJ1-hTERT 368 bp overlap
ChIP DE DE-GATA4-1 397 bp overlap
ChIP DE DE-GATA4-2 442 bp overlap
GATA6 1 dataset
ChIP DE DE-GATA6-2 455 bp overlap
GBX1 1 dataset
Motif DE_36h DE_36h-GBX1_MA0889.2 7 bp overlap
GBX2 1 dataset
Motif DE_36h DE_36h-GBX2_MA0890.2 6 bp overlap
HESX1 1 dataset
Motif DE_36h DE_36h-HESX1_MA0894.2 6 bp overlap
HLF 2 datasets
Motif DE_36h DE_36h-HLF_MA0043.4 9 bp overlap
ChIP HepG2 ENCFF854JLR 96 bp overlap
HOXA7 1 dataset
Motif DE_36h DE_36h-HOXA7_MA1498.3 6 bp overlap
HOXB13 1 dataset
ChIP G-401 GSE65381.HOXB13.G-401 592 bp overlap
JMJD1C 1 dataset
ChIP HL-60 GSE63484.JMJD1C.HL-60 133 bp overlap
KMT2A 1 dataset
ChIP IMS-M2_VTP GSE129636.KMT2A.IMS-M2_VTP 289 bp overlap
LBX1 1 dataset
Motif DE_36h DE_36h-LBX1_MA0618.2 7 bp overlap
LBX2 1 dataset
Motif DE_36h DE_36h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif DE_36h DE_36h-LHX2_MA0700.3 6 bp overlap
LHX9 1 dataset
Motif DE_36h DE_36h-LHX9_MA0701.3 7 bp overlap
MAFK 1 dataset
ChIP OCI-Ly7 GSE47784.MAFK.OCI-Ly7 138 bp overlap
MEF2A 1 dataset
Motif DE_36h DE_36h-MEF2A_MA0052.5 10 bp overlap
MEF2B 2 datasets
Motif DE_36h DE_36h-MEF2B_MA0660.1 12 bp overlap
ChIP tonsil GSE110682.MEF2B.tonsil 101 bp overlap
MEF2C 1 dataset
Motif DE_36h DE_36h-MEF2C_MA0497.2 11 bp overlap
MEF2D 1 dataset
Motif DE_36h DE_36h-MEF2D_MA0773.1 12 bp overlap
MSX1 1 dataset
Motif DE_36h DE_36h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_36h DE_36h-MSX2_MA0708.3 6 bp overlap
MTF1 1 dataset
Motif DE_36h DE_36h-MTF1_MA0863.1 14 bp overlap
MTF2 1 dataset
ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 231 bp overlap
MYOD1 1 dataset
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 175 bp overlap
Msx3 1 dataset
Motif DE_36h DE_36h-Msx3_MA0709.2 6 bp overlap
NANOG 2 datasets
ChIP hESC GSE18292.NANOG.hESC 145 bp overlap
ChIP hESC GSE18292.NANOG.hESC 110 bp overlap
NEUROD1 6 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 561 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 238 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 447 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 316 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 156 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 489 bp overlap
NFIL3 1 dataset
Motif DE_36h DE_36h-NFIL3_MA0025.3 9 bp overlap
Nkx2-1 1 dataset
Motif DE_36h DE_36h-Nkx2-1_MA1994.2 7 bp overlap
Nobox 1 dataset
Motif DE_36h DE_36h-Nobox_MA0125.2 6 bp overlap
Nr2e3 1 dataset
Motif DE_36h DE_36h-Nr2e3_MA0164.2 6 bp overlap
OGT 1 dataset
ChIP PC-3_OSMI-2 GSE112667.OGT.PC-3_OSMI-2 330 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 104 bp overlap
POU1F1 1 dataset
Motif DE_36h DE_36h-POU1F1_MA0784.3 14 bp overlap
POU2F1 1 dataset
Motif DE_36h DE_36h-POU2F1_MA0785.2 9 bp overlap
POU2F3 1 dataset
Motif DE_36h DE_36h-POU2F3_MA0627.3 9 bp overlap
POU3F1 1 dataset
Motif DE_36h DE_36h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif DE_36h DE_36h-POU3F2_MA0787.1 12 bp overlap
POU3F4 2 datasets
Motif DE_36h DE_36h-POU3F4_MA0789.1 9 bp overlap
Motif DE_36h DE_36h-POU3F4_MA0789.1 9 bp overlap
POU4F2 1 dataset
Motif DE_36h DE_36h-POU4F2_MA0683.2 15 bp overlap
POU5F1 1 dataset
Motif DE_36h DE_36h-POU5F1_MA1115.2 7 bp overlap
PRRX2 1 dataset
Motif DE_36h DE_36h-PRRX2_MA0075.4 7 bp overlap
RAX 1 dataset
Motif DE_36h DE_36h-RAX_MA0718.2 6 bp overlap
RELA 2 datasets
ChIP SGBS GSE64233.RELA.SGBS 62 bp overlap
ChIP SGBS_TNF GSE64233.RELA.SGBS_TNF 153 bp overlap
REST 2 datasets
ChIP hippocampus GSE144226.REST.hippocampus 264 bp overlap
ChIP neural ENCSR000BTV.REST.neural 133 bp overlap
SMAD2 2 datasets
Motif DE_36h DE_36h-SMAD2_MA1964.2 6 bp overlap
ChIP endoderm GSE29422.SMAD2.endoderm 142 bp overlap
SMARCC1 1 dataset
ChIP TTC-549_Dox GSE71504.SMARCC1.TTC-549_Dox 166 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_T48 GSE137168.SNAI2.SMS-CTR_T48 94 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 271 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 304 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 274 bp overlap
TBP 1 dataset
Motif DE_36h DE_36h-TBP_MA0108.3 7 bp overlap
TEAD4 2 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 126 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 126 bp overlap
TEF 1 dataset
Motif DE_36h DE_36h-TEF_MA0843.2 10 bp overlap
ZNF582 1 dataset
Motif DE_36h DE_36h-ZNF582_MA1983.2 19 bp overlap