chr2 : 38,105,897 – 38,106,254
357 bp 71 TFs 1 linked gene
This 357 bp open chromatin element is linked to CYP1B1-AS1 and is bound by 71 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
CYP1B1-AS1 9.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:38,100,897 – 38,111,254
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
71 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP HeLa GSE40632.AFF4.HeLa 186 bp overlap
AR 1 dataset
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 120 bp overlap
ARID2 1 dataset
ChIP NGP_ARID1A-mut2 GSE134626.ARID2.NGP_ARID1A-mut2 164 bp overlap
ATRX 2 datasets
ChIP metastatic-neuroblastoma_SKNFI GSE100148.ATRX.metastatic-neuroblastoma_SKNFI 310 bp overlap
ChIP metastatic-neuroblastoma_SKNMM GSE100148.ATRX.metastatic-neuroblastoma_SKNMM 293 bp overlap
BRD4 4 datasets
ChIP HT29 GSE73319.BRD4.HT29 283 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 293 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 357 bp overlap
ChIP SUM159PT_KO GSE131097.BRD4.SUM159PT_KO 134 bp overlap
CBFA2T2 1 dataset
ChIP K-562 ENCSR699PVC.CBFA2T2.K-562 202 bp overlap
CBFA2T3 2 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 312 bp overlap
ChIP K562 ENCFF673OEZ 332 bp overlap
CBX8 1 dataset
ChIP K-562 ENCSR000ATW.CBX8.K-562 90 bp overlap
CDKN1B 2 datasets
ChIP MDA-BoM-1833_shp27 GSE112444.CDKN1B.MDA-BoM-1833_shp27 229 bp overlap
ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 267 bp overlap
CHD2 2 datasets
ChIP SK-N-SH ENCFF669KMB 96 bp overlap
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 334 bp overlap
CRY1 1 dataset
ChIP U2OS GSE44236.CRY1.U2OS 201 bp overlap
EBF3_P177L 1 dataset
ChIP SK-N-SH GSE90682.EBF3_P177L.SK-N-SH 327 bp overlap
ELF3 1 dataset
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 159 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 322 bp overlap
EP300 2 datasets
ChIP SK-N-SH ENCFF829RWA 116 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 354 bp overlap
ERG 2 datasets
ChIP AMLPZ12 GSE23730.ERG.AMLPZ12 97 bp overlap
ChIP SKNO-1 GSE23730.ERG.SKNO-1 195 bp overlap
ESR1 3 datasets
ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 305 bp overlap
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 214 bp overlap
ChIP MCF-7_PaPE-1 GSE93510.ESR1.MCF-7_PaPE-1 357 bp overlap
EZH2 1 dataset
ChIP DND41 ENCSR000ASW.EZH2.DND41 88 bp overlap
FOS 1 dataset
ChIP CFPAC-1 GSE119930.FOS.CFPAC-1 195 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_Veh-131 GSE128018.FOXA1.breast-cancer_Veh-131 221 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 357 bp overlap
ChIP liver_CARN1618 ERP008682.FOXA2.liver_CARN1618 137 bp overlap
FOXJ3 1 dataset
ChIP SK-N-SH ENCFF124KVL 315 bp overlap
GABPA 1 dataset
ChIP SK-N-SH ENCFF755TJJ 115 bp overlap
GATA1 1 dataset
ChIP K-562 GSE107726.GATA1.K-562 165 bp overlap
GATA2 6 datasets
ChIP K-562 ENCSR000EWG.GATA2.K-562 144 bp overlap
ChIP SH-SY5Y ENCFF485YIB 339 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 307 bp overlap
ChIP SK-N-SH ENCFF764OZD 324 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 269 bp overlap
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 155 bp overlap
GATA3 4 datasets
ChIP BE2C GSE65664.GATA3.BE2C 230 bp overlap
ChIP Kelly GSE94822.GATA3.Kelly 226 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 198 bp overlap
ChIP SH-SY5Y GSE65664.GATA3.SH-SY5Y 183 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 357 bp overlap
ChIP DE DE-GATA4-2 274 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 243 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 307 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 248 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 357 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 287 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 357 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 357 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 276 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 357 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 357 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 357 bp overlap
HDAC2 1 dataset
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 61 bp overlap
HMGB2 1 dataset
ChIP HUVEC-C GSE98245.HMGB2.HUVEC-C 312 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 306 bp overlap
JUN 5 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 184 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 322 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 225 bp overlap
ChIP Karpas-299 GSE151413.JUN.Karpas-299 357 bp overlap
ChIP MDA-MB-231 GSE112444.JUN.MDA-MB-231 176 bp overlap
KDM1A 1 dataset
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 333 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 133 bp overlap
MXI1 3 datasets
ChIP SK-N-SH ENCFF746HVJ 357 bp overlap
ChIP SK-N-SH ENCFF746HVJ 173 bp overlap
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 232 bp overlap
MYCN 6 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 357 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 252 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 207 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 357 bp overlap
ChIP NB-1643 GSE94782.MYCN.NB-1643 309 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 175 bp overlap
NANOG 3 datasets
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 150 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 204 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 171 bp overlap
NCOA2 2 datasets
ChIP MCF-7 ERP000901.NCOA2.MCF-7 133 bp overlap
ChIP MCF-7_E2 ERP000901.NCOA2.MCF-7_E2 54 bp overlap
NELFE 1 dataset
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 175 bp overlap
NFKB1 2 datasets
ChIP HEK293T_2KR GSE129618.NFKB1.HEK293T_2KR 171 bp overlap
ChIP L1236 GSE63736.NFKB1.L1236 332 bp overlap
NFKB2 1 dataset
ChIP L1236 GSE63736.NFKB2.L1236 244 bp overlap
PHOX2B 2 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 187 bp overlap
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 184 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 301 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 173 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 357 bp overlap
RAD21 2 datasets
ChIP SK-N-SH ENCFF747MAS 242 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 336 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 245 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 357 bp overlap
RELA 5 datasets
ChIP 786-O GSE86092.RELA.786-O 242 bp overlap
ChIP KB_IL GSE52469.RELA.KB_IL 175 bp overlap
ChIP LNCaP_SIFOXA1_TNFA GSE83860.RELA.LNCaP_SIFOXA1_TNFA 124 bp overlap
ChIP MCF-7_IL1b_45m GSE67295.RELA.MCF-7_IL1b_45m 157 bp overlap
ChIP aortic-endothelial-cell_IL1B_D13 GSE139377.RELA.aortic-endothelial-cell_IL1B_D13 174 bp overlap
RELB 1 dataset
ChIP L1236 GSE63736.RELB.L1236 165 bp overlap
REST 1 dataset
ChIP SK-N-SH ENCSR000BJJ.REST.SK-N-SH 102 bp overlap
RFX5 1 dataset
ChIP SK-N-SH ENCFF755HLO 103 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 223 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 252 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 318 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 262 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 275 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 242 bp overlap
SMARCA4 6 datasets
ChIP NGP GSE134626.SMARCA4.NGP 201 bp overlap
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 310 bp overlap
ChIP NGP_ARID1A-mut1 GSE134626.SMARCA4.NGP_ARID1A-mut1 297 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 230 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 357 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 176 bp overlap
SMARCB1 1 dataset
ChIP hiPSC GSE124903.SMARCB1.hiPSC 357 bp overlap
SMARCC1 3 datasets
ChIP TTC-1240_delC GSE124903.SMARCC1.TTC-1240_delC 214 bp overlap
ChIP TTC-549_NoDox GSE71504.SMARCC1.TTC-549_NoDox 123 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 357 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 223 bp overlap
STAT3 1 dataset
ChIP monocyte_IL10 GSE120943.STAT3.monocyte_IL10 181 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 248 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 222 bp overlap
TAL1 7 datasets
ChIP K-562 GSE107726.TAL1.K-562 247 bp overlap
ChIP K-562 ENCSR000EHB.TAL1.K-562 179 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.TAL1.K-562_dCas9-LSD1 171 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 200 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 142 bp overlap
ChIP K-562_sgGal4 GSE132212.TAL1.K-562_sgGal4 148 bp overlap
ChIP K562 ENCFF661CCK 267 bp overlap
TBX2 2 datasets
ChIP Kelly GSE94822.TBX2.Kelly 347 bp overlap
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 357 bp overlap
TCF4 1 dataset
ChIP SH-SY5Y GSE96915.TCF4.SH-SY5Y 242 bp overlap
TEAD4 2 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 342 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 342 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 323 bp overlap
TSHZ2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 237 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 357 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 357 bp overlap
YY1 1 dataset
ChIP SK-N-SH ENCSR000BLZ.YY1.SK-N-SH 145 bp overlap
ZFX 1 dataset
ChIP MCF-7 GSE102616.ZFX.MCF-7 257 bp overlap
ZNF462 1 dataset
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 199 bp overlap
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