chr2 : 30,346,479 – 30,346,757
278 bp 69 TFs 1 linked gene
This 278 bp open chromatin element is linked to LINC01936 and is bound by 69 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC01936 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:30,341,479 – 30,351,757
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
69 transcription factors
Source
Cell type
ASCL1 1 dataset
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 161 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 161 bp overlap
BHLHE22 2 datasets
Motif DE_12h DE_12h-BHLHE22_MA1635.2 6 bp overlap
Motif ES_0h ES_0h-BHLHE22_MA1635.2 6 bp overlap
BRD2 1 dataset
ChIP MV4-11_IBET151_500nM GSE120715.BRD2.MV4-11_IBET151_500nM 146 bp overlap
BRD4 1 dataset
ChIP OVCAR-3_DMSO GSE77568.BRD4.OVCAR-3_DMSO 278 bp overlap
CDK8 2 datasets
ChIP leiomyoma_PT886 GSE128230.CDK8.leiomyoma_PT886 88 bp overlap
ChIP myometrium_PT886 GSE128230.CDK8.myometrium_PT886 85 bp overlap
CTCF 5 datasets
ChIP artery_tibial ENCSR699BEK.CTCF.artery_tibial 256 bp overlap
ChIP gastroesophageal-sphincter ENCSR298ZPF.CTCF.gastroesophageal-sphincter 276 bp overlap
ChIP heart ENCSR232OFD.CTCF.heart 82 bp overlap
ChIP heart_left-ventricle ENCSR791AYW.CTCF.heart_left-ventricle 253 bp overlap
ChIP heart_left-ventricle ENCSR718SDR.CTCF.heart_left-ventricle 278 bp overlap
E2F6 4 datasets
Motif DE_12h DE_12h-E2F6_MA0471.3 8 bp overlap
Motif ES_0h ES_0h-E2F6_MA0471.3 8 bp overlap
ChIP H1 ENCFF785DWK 172 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 278 bp overlap
ESR1 4 datasets
Motif DE_12h DE_12h-ESR1_MA0112.4 15 bp overlap
Motif DE_24h DE_24h-ESR1_MA0112.4 15 bp overlap
ChIP MCF-7_PaPE-1_OA GSE93510.ESR1.MCF-7_PaPE-1_OA 278 bp overlap
ChIP endometrioid-adenocarcinoma_tumor_2 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_2 167 bp overlap
ETV1 3 datasets
ChIP GIST GSE22441.ETV1.GIST 187 bp overlap
ChIP GIST-T1 GSE106624.ETV1.GIST-T1 278 bp overlap
ChIP GIST-T1 GSE80443.ETV1.GIST-T1 158 bp overlap
ETV2::FIGLA 2 datasets
Motif DE_12h DE_12h-ETV2FIGLA_MA1941.2 13 bp overlap
Motif ES_0h ES_0h-ETV2FIGLA_MA1941.2 13 bp overlap
ETV5::FIGLA 2 datasets
Motif DE_12h DE_12h-ETV5FIGLA_MA1945.2 14 bp overlap
Motif ES_0h ES_0h-ETV5FIGLA_MA1945.2 14 bp overlap
ETV5::FOXI1 2 datasets
Motif DE_12h DE_12h-ETV5FOXI1_MA1946.2 12 bp overlap
Motif ES_0h ES_0h-ETV5FOXI1_MA1946.2 12 bp overlap
ETV5::FOXO1 2 datasets
Motif DE_12h DE_12h-ETV5FOXO1_MA1947.2 10 bp overlap
Motif ES_0h ES_0h-ETV5FOXO1_MA1947.2 10 bp overlap
EWSR1-FLI1 3 datasets
Motif DE_12h DE_12h-EWSR1-FLI1_MA0149.1 18 bp overlap
Motif DE_12h DE_12h-EWSR1-FLI1_MA0149.1 18 bp overlap
Motif ES_0h ES_0h-EWSR1-FLI1_MA0149.1 18 bp overlap
Erg 1 dataset
Motif DE_12h DE_12h-Erg_MA0474.4 10 bp overlap
GRHL2 2 datasets
Motif DE_12h DE_12h-GRHL2_MA1105.3 8 bp overlap
Motif ES_0h ES_0h-GRHL2_MA1105.3 8 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 260 bp overlap
HNRNPH1 1 dataset
ChIP Hep-G2 ENCSR066FXN.HNRNPH1.Hep-G2 174 bp overlap
HNRNPLL 2 datasets
ChIP Hep-G2 ENCSR804HMZ.HNRNPLL.Hep-G2 252 bp overlap
ChIP Hep-G2 GSE120104.HNRNPLL.Hep-G2 172 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 120 bp overlap
KLF13 2 datasets
Motif DE_12h DE_12h-KLF13_MA0657.2 17 bp overlap
Motif ES_0h ES_0h-KLF13_MA0657.2 17 bp overlap
KLF15 2 datasets
Motif DE_12h DE_12h-KLF15_MA1513.2 8 bp overlap
Motif ES_0h ES_0h-KLF15_MA1513.2 8 bp overlap
KLF16 2 datasets
Motif DE_12h DE_12h-KLF16_MA0741.1 11 bp overlap
Motif ES_0h ES_0h-KLF16_MA0741.1 11 bp overlap
KLF3 2 datasets
Motif DE_12h DE_12h-KLF3_MA1516.2 10 bp overlap
Motif ES_0h ES_0h-KLF3_MA1516.2 10 bp overlap
MAZ 5 datasets
Motif DE_12h DE_12h-MAZ_MA1522.2 8 bp overlap
Motif DE_12h DE_12h-MAZ_MA1522.2 8 bp overlap
Motif ES_0h ES_0h-MAZ_MA1522.2 8 bp overlap
Motif ES_0h ES_0h-MAZ_MA1522.2 8 bp overlap
ChIP IMR-90 ENCSR000EFF.MAZ.IMR-90 102 bp overlap
MED12 3 datasets
ChIP leiomyoma_PT886 GSE128230.MED12.leiomyoma_PT886 226 bp overlap
ChIP myometrium_PT886 GSE128230.MED12.myometrium_PT886 87 bp overlap
ChIP myometrium_PT916 GSE128230.MED12.myometrium_PT916 108 bp overlap
MITF 1 dataset
ChIP melanocyte_BRAFV600E GSE50681.MITF.melanocyte_BRAFV600E 113 bp overlap
NEUROD1 1 dataset
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 80 bp overlap
Neurod2 2 datasets
Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap
Motif ES_0h ES_0h-Neurod2_MA1993.2 6 bp overlap
Olig2 2 datasets
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
Motif ES_0h ES_0h-Olig2_MA1997.2 6 bp overlap
PATZ1 2 datasets
Motif DE_12h DE_12h-PATZ1_MA1961.2 11 bp overlap
Motif ES_0h ES_0h-PATZ1_MA1961.2 11 bp overlap
PGR 2 datasets
ChIP myometrium_NP1 GSE137550.PGR.myometrium_NP1 278 bp overlap
ChIP myometrium_NP2 GSE137550.PGR.myometrium_NP2 112 bp overlap
POLR2A 16 datasets
ChIP esophagus muscularis mucosa ENCFF759BBR 278 bp overlap
ChIP esophagus muscularis mucosa ENCFF791ZXN 246 bp overlap
ChIP gastroesophageal sphincter ENCFF070PCA 271 bp overlap
ChIP gastroesophageal sphincter ENCFF238INU 278 bp overlap
ChIP heart left ventricle ENCFF591JWH 161 bp overlap
ChIP prostate gland ENCFF545MVF 160 bp overlap
ChIP sigmoid colon ENCFF101ILL 275 bp overlap
ChIP sigmoid colon ENCFF725QFT 278 bp overlap
ChIP sigmoid colon ENCFF725QFT 63 bp overlap
ChIP sigmoid colon ENCFF748YVT 278 bp overlap
ChIP sigmoid colon ENCFF754JQR 278 bp overlap
ChIP thyroid gland ENCFF979LRR 278 bp overlap
ChIP upper lobe of left lung ENCFF199JUI 153 bp overlap
ChIP vagina ENCFF305NWS 53 bp overlap
ChIP vagina ENCFF384GAB 278 bp overlap
ChIP vagina ENCFF384GAB 276 bp overlap
POU5F1 2 datasets
ChIP BG03 GSE21614.POU5F1.BG03 187 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 228 bp overlap
PRDM15 1 dataset
ChIP WTC11 ENCFF108TMF 268 bp overlap
RAD21 1 dataset
ChIP HUVEC-C_hypoxia GSE94872.RAD21.HUVEC-C_hypoxia 191 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 156 bp overlap
RELA 22 datasets
ChIP HAEC_TNFa_4h GSE89970.RELA.HAEC_TNFa_4h 233 bp overlap
ChIP HUVEC-C_Scr GSE87552.RELA.HUVEC-C_Scr 111 bp overlap
ChIP HUVEC-C_TNF GSE53998.RELA.HUVEC-C_TNF 214 bp overlap
ChIP HUVEC-C_TNF GSE43070.RELA.HUVEC-C_TNF 72 bp overlap
ChIP HUVEC-C_TNF-30min GSE121890.RELA.HUVEC-C_TNF-30min 262 bp overlap
ChIP HUVEC-C_TNF-60min GSE121890.RELA.HUVEC-C_TNF-60min 237 bp overlap
ChIP HUVEC-C_TNF_30M GSE34500.RELA.HUVEC-C_TNF_30M 262 bp overlap
ChIP HUVEC-C_TNF_JQ1 GSE53998.RELA.HUVEC-C_TNF_JQ1 202 bp overlap
ChIP aortic-endothelial-cell_IL1B_D13 GSE139377.RELA.aortic-endothelial-cell_IL1B_D13 134 bp overlap
ChIP aortic-endothelial-cell_IL1B_D16 GSE139377.RELA.aortic-endothelial-cell_IL1B_D16 148 bp overlap
ChIP aortic-endothelial-cell_IL1B_D2 GSE139377.RELA.aortic-endothelial-cell_IL1B_D2 148 bp overlap
ChIP aortic-endothelial-cell_IL1B_D21 GSE139377.RELA.aortic-endothelial-cell_IL1B_D21 150 bp overlap
ChIP aortic-endothelial-cell_IL1B_D22 GSE139377.RELA.aortic-endothelial-cell_IL1B_D22 184 bp overlap
ChIP aortic-endothelial-cell_IL1B_D27 GSE139377.RELA.aortic-endothelial-cell_IL1B_D27 193 bp overlap
ChIP aortic-endothelial-cell_IL1B_D38 GSE139377.RELA.aortic-endothelial-cell_IL1B_D38 70 bp overlap
ChIP aortic-endothelial-cell_IL1B_D39 GSE139377.RELA.aortic-endothelial-cell_IL1B_D39 183 bp overlap
ChIP aortic-endothelial-cell_IL1B_D40 GSE139377.RELA.aortic-endothelial-cell_IL1B_D40 123 bp overlap
ChIP aortic-endothelial-cell_IL1B_D41 GSE139377.RELA.aortic-endothelial-cell_IL1B_D41 124 bp overlap
ChIP aortic-endothelial-cell_IL1B_D47 GSE139377.RELA.aortic-endothelial-cell_IL1B_D47 217 bp overlap
ChIP aortic-endothelial-cell_IL1B_D6 GSE139377.RELA.aortic-endothelial-cell_IL1B_D6 120 bp overlap
ChIP aortic-endothelial-cell_IL1B_D7 GSE139377.RELA.aortic-endothelial-cell_IL1B_D7 150 bp overlap
ChIP aortic-endothelial-cell_IL1B_D8 GSE139377.RELA.aortic-endothelial-cell_IL1B_D8 215 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 96 bp overlap
SMAD2 2 datasets
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
Motif ES_0h ES_0h-SMAD2_MA1964.2 6 bp overlap
SMC1 1 dataset
ChIP HCAEC GSE101921.SMC1.HCAEC 278 bp overlap
SP2 2 datasets
Motif DE_12h DE_12h-SP2_MA0516.3 9 bp overlap
Motif ES_0h ES_0h-SP2_MA0516.3 9 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
SPIB 1 dataset
Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap
STAT1::STAT2 1 dataset
Motif DE_12h DE_12h-STAT1STAT2_MA0517.2 13 bp overlap
Spz1 2 datasets
Motif DE_12h DE_12h-Spz1_MA0111.1 11 bp overlap
Motif ES_0h ES_0h-Spz1_MA0111.1 11 bp overlap
TAF1 1 dataset
ChIP H1 ENCFF478SZO 139 bp overlap
TBP 1 dataset
ChIP WA01 ENCSR000ECB.TBP.WA01 133 bp overlap
TFAP4 2 datasets
Motif DE_12h DE_12h-TFAP4_MA0691.1 10 bp overlap
Motif ES_0h ES_0h-TFAP4_MA0691.1 10 bp overlap
TFAP4::ETV1 2 datasets
Motif DE_12h DE_12h-TFAP4ETV1_MA1966.2 13 bp overlap
Motif ES_0h ES_0h-TFAP4ETV1_MA1966.2 13 bp overlap
TP53 1 dataset
ChIP Calu-1_MUT8-COMB GSE128673.TP53.Calu-1_MUT8-COMB 240 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 278 bp overlap
Tcf12 2 datasets
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Motif ES_0h ES_0h-Tcf12_MA0521.3 6 bp overlap
Tfcp2l1 2 datasets
Motif DE_12h DE_12h-Tfcp2l1_MA0145.2 14 bp overlap
Motif ES_0h ES_0h-Tfcp2l1_MA0145.2 14 bp overlap
Twist2 2 datasets
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
Motif ES_0h ES_0h-Twist2_MA0633.3 6 bp overlap
ZBTB33 1 dataset
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 194 bp overlap
ZFP14 1 dataset
Motif DE_12h DE_12h-ZFP14_MA1972.1 15 bp overlap
ZKSCAN5 3 datasets
Motif DE_12h DE_12h-ZKSCAN5_MA1652.2 9 bp overlap
Motif DE_12h DE_12h-ZKSCAN5_MA1652.2 9 bp overlap
Motif ES_0h ES_0h-ZKSCAN5_MA1652.2 9 bp overlap
ZNF121 1 dataset
ChIP WTC11 ENCFF291API 278 bp overlap
ZNF148 4 datasets
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
Motif ES_0h ES_0h-ZNF148_MA1653.2 10 bp overlap
Motif ES_0h ES_0h-ZNF148_MA1653.2 10 bp overlap
ZNF213 1 dataset
Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap
ZNF257 2 datasets
Motif DE_12h DE_12h-ZNF257_MA1710.2 10 bp overlap
Motif ES_0h ES_0h-ZNF257_MA1710.2 10 bp overlap
ZNF263 1 dataset
Motif DE_12h DE_12h-ZNF263_MA0528.3 7 bp overlap
ZNF281 2 datasets
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
Motif ES_0h ES_0h-ZNF281_MA1630.3 10 bp overlap
ZNF282 1 dataset
Motif DE_12h DE_12h-ZNF282_MA1154.2 15 bp overlap
ZNF682 2 datasets
Motif DE_12h DE_12h-ZNF682_MA1599.2 11 bp overlap
Motif ES_0h ES_0h-ZNF682_MA1599.2 11 bp overlap
ZNF701 2 datasets
Motif DE_12h DE_12h-ZNF701_MA1987.2 17 bp overlap
Motif ES_0h ES_0h-ZNF701_MA1987.2 17 bp overlap
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