chrY : 8,126,023 – 8,126,686

663 bp 131 TFs 1 linked gene

This 663 bp open chromatin element is linked to ENSG00000293305 and is bound by 131 transcription factors.

Linked Genes

1 gene

Gene	Expression	Dist. to TSS	Distance	Link type
ENSG00000293305		at TSS	At TSS	Proximity

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

131 transcription factors

ALX3 1 dataset

Motif DE_60h DE_60h-ALX3_MA0634.2 6 bp overlap

ARGFX 1 dataset

Motif DE_60h DE_60h-ARGFX_MA1463.2 8 bp overlap

Alx1 1 dataset

Motif DE_60h DE_60h-Alx1_MA0854.2 8 bp overlap

Alx4 1 dataset

Motif DE_60h DE_60h-Alx4_MA0853.2 12 bp overlap

Arx 1 dataset

Motif DE_60h DE_60h-Arx_MA0874.2 10 bp overlap

Atf3 1 dataset

Motif DE_60h DE_60h-Atf3_MA1988.2 7 bp overlap

BACH1 1 dataset

Motif DE_60h DE_60h-BACH1_MA1633.2 9 bp overlap

BACH2 1 dataset

Motif DE_60h DE_60h-BACH2_MA1101.3 11 bp overlap

BARX2 1 dataset

Motif DE_60h DE_60h-BARX2_MA1471.2 9 bp overlap

BATF 1 dataset

Motif DE_60h DE_60h-BATF_MA1634.2 7 bp overlap

BATF3 1 dataset

Motif DE_60h DE_60h-BATF3_MA0835.3 7 bp overlap

BATF::JUN 1 dataset

Motif DE_60h DE_60h-BATFJUN_MA0462.3 7 bp overlap

BNC2 1 dataset

Motif DE_60h DE_60h-BNC2_MA1928.2 7 bp overlap

CEBPD 1 dataset

Motif DE_60h DE_60h-CEBPD_MA0836.3 8 bp overlap

Crx 1 dataset

Motif DE_60h DE_60h-Crx_MA0467.3 6 bp overlap

DRGX 1 dataset

Motif DE_60h DE_60h-DRGX_MA1481.2 6 bp overlap

Dmbx1 1 dataset

Motif DE_60h DE_60h-Dmbx1_MA0883.2 10 bp overlap

ELF3 1 dataset

ChIP PDAC GSE64557.ELF3.PDAC 275 bp overlap

EMX1 1 dataset

Motif DE_60h DE_60h-EMX1_MA0612.3 6 bp overlap

EMX2 1 dataset

Motif DE_60h DE_60h-EMX2_MA0886.2 6 bp overlap

EN1 1 dataset

Motif DE_60h DE_60h-EN1_MA0027.3 6 bp overlap

EN2 1 dataset

Motif DE_60h DE_60h-EN2_MA0642.3 7 bp overlap

ESX1 1 dataset

Motif DE_60h DE_60h-ESX1_MA0644.3 7 bp overlap

ETV5::DRGX 1 dataset

Motif DE_60h DE_60h-ETV5DRGX_MA1944.2 12 bp overlap

EVX1 1 dataset

Motif DE_60h DE_60h-EVX1_MA0887.2 6 bp overlap

EVX2 1 dataset

Motif DE_60h DE_60h-EVX2_MA0888.2 6 bp overlap

EWSR1-FLI1 1 dataset

Motif DE_60h DE_60h-EWSR1-FLI1_MA0149.1 18 bp overlap

FOS 2 datasets

ChIP CFPAC-1 GSE119930.FOS.CFPAC-1 266 bp overlap

Motif DE_60h DE_60h-FOS_MA0476.2 8 bp overlap

FOS::JUN 1 dataset

Motif DE_60h DE_60h-FOSJUN_MA0099.4 9 bp overlap

FOS::JUNB 1 dataset

Motif DE_60h DE_60h-FOSJUNB_MA1134.2 9 bp overlap

FOS::JUND 1 dataset

Motif DE_60h DE_60h-FOSJUND_MA1141.2 9 bp overlap

FOSB::JUNB 1 dataset

Motif DE_60h DE_60h-FOSBJUNB_MA1135.2 9 bp overlap

FOSL1 1 dataset

Motif DE_60h DE_60h-FOSL1_MA0477.3 9 bp overlap

FOSL1::JUN 1 dataset

Motif DE_60h DE_60h-FOSL1JUN_MA1128.2 9 bp overlap

FOSL1::JUNB 1 dataset

Motif DE_60h DE_60h-FOSL1JUNB_MA1137.2 9 bp overlap

FOSL1::JUND 1 dataset

Motif DE_60h DE_60h-FOSL1JUND_MA1142.2 8 bp overlap

FOSL2 1 dataset

Motif DE_60h DE_60h-FOSL2_MA0478.2 10 bp overlap

FOSL2::JUN 1 dataset

Motif DE_60h DE_60h-FOSL2JUN_MA1130.2 9 bp overlap

FOSL2::JUNB 1 dataset

Motif DE_60h DE_60h-FOSL2JUNB_MA1138.2 9 bp overlap

FOSL2::JUND 1 dataset

Motif DE_60h DE_60h-FOSL2JUND_MA1144.2 9 bp overlap

FOXA2 1 dataset

ChIP DE DE-FOXA2-1 302 bp overlap

GATA4 2 datasets

ChIP DE DE-GATA4-1 410 bp overlap

ChIP DE DE-GATA4-2 544 bp overlap

GATA6 8 datasets

ChIP DE DE-GATA6-1 363 bp overlap

ChIP DE DE-GATA6-2 431 bp overlap

ChIP DE_D1 S09-DE-d1-GATA6-exp1 435 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 376 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 410 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 542 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 423 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 426 bp overlap

GBX1 1 dataset

Motif DE_60h DE_60h-GBX1_MA0889.2 7 bp overlap

GSC 1 dataset

Motif DE_60h DE_60h-GSC_MA0648.2 6 bp overlap

GSC2 1 dataset

Motif DE_60h DE_60h-GSC2_MA0891.2 6 bp overlap

GSX1 1 dataset

Motif DE_60h DE_60h-GSX1_MA0892.2 6 bp overlap

GSX2 1 dataset

Motif DE_60h DE_60h-GSX2_MA0893.3 7 bp overlap

HNF1A 1 dataset

Motif DE_60h DE_60h-HNF1A_MA0046.3 13 bp overlap

HNF1B 1 dataset

Motif DE_60h DE_60h-HNF1B_MA0153.2 13 bp overlap

HOXA1 1 dataset

Motif DE_60h DE_60h-HOXA1_MA1495.2 6 bp overlap

HOXA2 1 dataset

Motif DE_60h DE_60h-HOXA2_MA0900.3 6 bp overlap

HOXA3 1 dataset

Motif DE_60h DE_60h-HOXA3_MA2119.1 7 bp overlap

HOXB1 1 dataset

Motif DE_60h DE_60h-HOXB1_MA2093.1 7 bp overlap

HOXB2 1 dataset

Motif DE_60h DE_60h-HOXB2_MA0902.3 6 bp overlap

HOXB3 1 dataset

Motif DE_60h DE_60h-HOXB3_MA0903.2 6 bp overlap

HOXB5 1 dataset

Motif DE_60h DE_60h-HOXB5_MA0904.3 6 bp overlap

HOXC8 1 dataset

Motif DE_60h DE_60h-HOXC8_MA1505.2 6 bp overlap

HOXD3 1 dataset

Motif DE_60h DE_60h-HOXD3_MA0912.2 8 bp overlap

Hnf1A 1 dataset

Motif DE_60h DE_60h-Hnf1A_MA1991.2 10 bp overlap

IKZF2 1 dataset

Motif DE_60h DE_60h-IKZF2_MA2326.1 6 bp overlap

ISX 1 dataset

Motif DE_60h DE_60h-ISX_MA0654.2 6 bp overlap

JDP2 1 dataset

Motif DE_60h DE_60h-JDP2_MA0655.1 9 bp overlap

JUN 4 datasets

ChIP DE_D1 S08-DE-d1-JUN-exp1 377 bp overlap

ChIP DE_D1 S40-DE-d1-JUN-exp2 425 bp overlap

ChIP DE_D2 S02-DE-d2-JUN-exp1 380 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 329 bp overlap

JUN::JUNB 1 dataset

Motif DE_60h DE_60h-JUNJUNB_MA1132.2 8 bp overlap

JUNB 1 dataset

Motif DE_60h DE_60h-JUNB_MA0490.3 9 bp overlap

JUND 1 dataset

Motif DE_60h DE_60h-JUND_MA0491.3 9 bp overlap

Jun 1 dataset

Motif DE_60h DE_60h-Jun_MA0489.3 8 bp overlap

KLF4 1 dataset

ChIP keratinocyte_diff GSE57702.KLF4.keratinocyte_diff 186 bp overlap

LBX1 1 dataset

Motif DE_60h DE_60h-LBX1_MA0618.2 7 bp overlap

LHX5 1 dataset

Motif DE_60h DE_60h-LHX5_MA1519.2 7 bp overlap

LHX6 1 dataset

Motif DE_60h DE_60h-LHX6_MA0658.2 8 bp overlap

LHX9 1 dataset

Motif DE_60h DE_60h-LHX9_MA0701.3 7 bp overlap

LMX1A 1 dataset

Motif DE_60h DE_60h-LMX1A_MA0702.3 7 bp overlap

LMX1B 1 dataset

Motif DE_60h DE_60h-LMX1B_MA0703.3 8 bp overlap

Lhx1 1 dataset

Motif DE_60h DE_60h-Lhx1_MA1518.3 10 bp overlap

Lhx3 2 datasets

Motif DE_60h DE_60h-Lhx3_MA0135.2 12 bp overlap

Lhx4 1 dataset

Motif DE_60h DE_60h-Lhx4_MA0704.2 6 bp overlap

Lhx8 1 dataset

Motif DE_60h DE_60h-Lhx8_MA0705.2 6 bp overlap

MEOX1 1 dataset

Motif DE_60h DE_60h-MEOX1_MA0661.2 7 bp overlap

MEOX2 1 dataset

Motif DE_60h DE_60h-MEOX2_MA0706.2 7 bp overlap

MIXL1 1 dataset

Motif DE_60h DE_60h-MIXL1_MA0662.2 6 bp overlap

MNX1 1 dataset

Motif DE_60h DE_60h-MNX1_MA0707.3 6 bp overlap

NELFE 1 dataset

ChIP DLD-1_NELFCD-AID GSE144786.NELFE.DLD-1_NELFCD-AID 183 bp overlap

NFE2 1 dataset

Motif DE_60h DE_60h-NFE2_MA0841.2 10 bp overlap

NKX6-1 1 dataset

Motif DE_60h DE_60h-NKX6-1_MA0674.2 7 bp overlap

NKX6-2 1 dataset

Motif DE_60h DE_60h-NKX6-2_MA0675.2 6 bp overlap

NOTO 1 dataset

Motif DE_60h DE_60h-NOTO_MA0710.2 7 bp overlap

OTX1 1 dataset

Motif DE_60h DE_60h-OTX1_MA0711.2 6 bp overlap

PAX4 1 dataset

Motif DE_60h DE_60h-PAX4_MA0068.2 8 bp overlap

PDX1 1 dataset

Motif DE_60h DE_60h-PDX1_MA0132.3 6 bp overlap

PITX1 1 dataset

Motif DE_60h DE_60h-PITX1_MA0682.3 6 bp overlap

PITX2 1 dataset

Motif DE_60h DE_60h-PITX2_MA1547.2 8 bp overlap

PITX3 1 dataset

Motif DE_60h DE_60h-PITX3_MA0714.2 6 bp overlap

POU6F1 1 dataset

Motif DE_60h DE_60h-POU6F1_MA0628.2 6 bp overlap

POU6F2 1 dataset

Motif DE_60h DE_60h-POU6F2_MA0793.2 9 bp overlap

PRDM9 1 dataset

Motif DE_60h DE_60h-PRDM9_MA1723.2 20 bp overlap

PRRX1 1 dataset

Motif DE_60h DE_60h-PRRX1_MA0716.2 6 bp overlap

PRRX2 1 dataset

Motif DE_60h DE_60h-PRRX2_MA0075.4 7 bp overlap

RAX2 1 dataset

Motif DE_60h DE_60h-RAX2_MA0717.2 6 bp overlap

RCOR1 1 dataset

ChIP keratinocyte_diff GSE57702.RCOR1.keratinocyte_diff 407 bp overlap

RELA 1 dataset

ChIP aortic-endothelial-cell_IL1B_D38 GSE139377.RELA.aortic-endothelial-cell_IL1B_D38 170 bp overlap

RHOXF1 1 dataset

Motif DE_60h DE_60h-RHOXF1_MA0719.2 6 bp overlap

SHOX 1 dataset

Motif DE_60h DE_60h-SHOX_MA0630.2 6 bp overlap

SMAD2_3 1 dataset

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 407 bp overlap

SMARCA4 5 datasets

ChIP A-549_AG15677 GSE132290.SMARCA4.A-549_AG15677 109 bp overlap

ChIP A-549_AG15678 GSE132290.SMARCA4.A-549_AG15678 84 bp overlap

ChIP A-549_AG15721 GSE132290.SMARCA4.A-549_AG15721 108 bp overlap

ChIP A-549_AG15722 GSE132290.SMARCA4.A-549_AG15722 91 bp overlap

ChIP A-549_AG15725 GSE132290.SMARCA4.A-549_AG15725 79 bp overlap

SOX10 1 dataset

Motif DE_60h DE_60h-SOX10_MA0442.3 6 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 334 bp overlap

SOX4 1 dataset

Motif DE_60h DE_60h-SOX4_MA0867.3 8 bp overlap

SP4 1 dataset

Motif DE_60h DE_60h-SP4_MA0685.2 9 bp overlap

SP5 1 dataset

Motif DE_60h DE_60h-SP5_MA1965.2 6 bp overlap

SUPT5H 2 datasets

ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 429 bp overlap

ChIP DLD-1_NELFCD-AID_treated GSE144786.SUPT5H.DLD-1_NELFCD-AID_treated 291 bp overlap

Shox2 1 dataset

Motif DE_60h DE_60h-Shox2_MA0720.2 6 bp overlap

Sox11 1 dataset

Motif DE_60h DE_60h-Sox11_MA0869.3 8 bp overlap

Sox17 1 dataset

Motif DE_60h DE_60h-Sox17_MA0078.3 10 bp overlap

Sox6 1 dataset

Motif DE_60h DE_60h-Sox6_MA0515.1 10 bp overlap

Sox7 1 dataset

Motif DE_60h DE_60h-Sox7_MA2095.1 10 bp overlap

Spi1 1 dataset

Motif DE_60h DE_60h-Spi1_MA0080.7 13 bp overlap

TCF7L1 1 dataset

Motif DE_60h DE_60h-TCF7L1_MA1421.1 12 bp overlap

TCF7L2 1 dataset

Motif DE_60h DE_60h-TCF7L2_MA0523.2 9 bp overlap

TLX2 1 dataset

Motif DE_60h DE_60h-TLX2_MA1577.2 6 bp overlap

UNCX 1 dataset

Motif DE_60h DE_60h-UNCX_MA0721.2 6 bp overlap

VAX1 1 dataset

Motif DE_60h DE_60h-VAX1_MA0722.2 7 bp overlap

VAX2 1 dataset

Motif DE_60h DE_60h-VAX2_MA0723.3 6 bp overlap

VENTX 1 dataset

Motif DE_60h DE_60h-VENTX_MA0724.1 9 bp overlap

VSX1 1 dataset

Motif DE_60h DE_60h-VSX1_MA0725.2 7 bp overlap

VSX2 1 dataset

Motif DE_60h DE_60h-VSX2_MA0726.2 7 bp overlap

ZNF263 1 dataset

Motif DE_60h DE_60h-ZNF263_MA0528.3 7 bp overlap

ZNF582 1 dataset

Motif DE_60h DE_60h-ZNF582_MA1983.2 19 bp overlap

ZNF652 1 dataset

Motif DE_60h DE_60h-ZNF652_MA1657.2 9 bp overlap

mix-a 1 dataset

Motif DE_60h DE_60h-mix-a_MA0621.2 7 bp overlap