chrX : 39,201,804 – 39,203,052
1,248 bp 87 TFs 0 linked genes
This 1.2 kb open chromatin element has no linked target genes and is bound by 87 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chrX:39,196,804 – 39,208,052
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
87 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP 12Z GSE129781.ARID1A.12Z 62 bp overlap
ARID1B 3 datasets
ChIP K-562 ENCSR822CCM.ARID1B.K-562 120 bp overlap
ChIP K-562 ENCSR822CCM.ARID1B.K-562 369 bp overlap
ChIP K562 ENCFF938UXQ 77 bp overlap
ATF1 2 datasets
ChIP K562 ENCFF817JQF 89 bp overlap
ChIP K562 ENCFF817JQF 293 bp overlap
ATF3 2 datasets
ChIP K-562 ENCSR028UIU.ATF3.K-562 84 bp overlap
ChIP K562 ENCFF604FPV 209 bp overlap
BHLHE22 3 datasets
Motif DE_60h DE_60h-BHLHE22_MA1635.2 6 bp overlap
Motif DE_72h DE_72h-BHLHE22_MA1635.2 6 bp overlap
Motif DE_72h DE_72h-BHLHE22_MA1635.2 6 bp overlap
BRD4 5 datasets
ChIP HCC1395 GSE63581.BRD4.HCC1395 110 bp overlap
ChIP K-562_DMSO-IFNG GSE138084.BRD4.K-562_DMSO-IFNG 312 bp overlap
ChIP K-562_iBET-BD1-IFNG GSE138084.BRD4.K-562_iBET-BD1-IFNG 238 bp overlap
ChIP K-562_iBET-BD2-IFNG GSE138084.BRD4.K-562_iBET-BD2-IFNG 182 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 191 bp overlap
CBFA2T3 2 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 240 bp overlap
ChIP K562 ENCFF673OEZ 411 bp overlap
CTCF 2 datasets
Motif DE_60h DE_60h-CTCF_MA0139.2 15 bp overlap
Motif DE_72h DE_72h-CTCF_MA0139.2 15 bp overlap
ELF3 2 datasets
ChIP PDAC GSE64557.ELF3.PDAC 279 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 307 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 1248 bp overlap
ERF::NHLH1 1 dataset
Motif DE_72h DE_72h-ERFNHLH1_MA1938.2 16 bp overlap
ESR1 2 datasets
Motif DE_72h DE_72h-ESR1_MA0112.4 15 bp overlap
ChIP T-47D GSE148277.ESR1.T-47D 424 bp overlap
EZH2 1 dataset
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 102 bp overlap
FIGLA 2 datasets
Motif DE_60h DE_60h-FIGLA_MA0820.2 6 bp overlap
Motif DE_72h DE_72h-FIGLA_MA0820.2 6 bp overlap
FOS 1 dataset
ChIP MCF-7 ENCSR569XNP.FOS.MCF-7 113 bp overlap
FOSL1 2 datasets
ChIP K-562 ENCSR239ZLZ.FOSL1.K-562 253 bp overlap
ChIP K562 ENCFF455MKD 323 bp overlap
FOXA1 2 datasets
ChIP T-47D_E2_TAM ERP000380.FOXA1.T-47D_E2_TAM 161 bp overlap
ChIP breast-cancer_3487 GSE126004.FOXA1.breast-cancer_3487 164 bp overlap
FOXA2 3 datasets
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 226 bp overlap
ChIP DE DE-FOXA2-1 937 bp overlap
ChIP DE DE-FOXA2-2 1067 bp overlap
GATA1 7 datasets
ChIP K-562 GSE107726.GATA1.K-562 76 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 94 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 175 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 72 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 187 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 219 bp overlap
ChIP erythroid_Don001 GSE137982.GATA1.erythroid_Don001 69 bp overlap
GATA1::TAL1 1 dataset
Motif DE_72h DE_72h-GATA1TAL1_MA0140.3 17 bp overlap
GATA2 9 datasets
ChIP ESF GSE108408.GATA2.ESF 89 bp overlap
ChIP K-562 ENCSR000DKA.GATA2.K-562 250 bp overlap
ChIP K-562 ENCSR000DKA.GATA2.K-562 382 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 57 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 177 bp overlap
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 182 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P1 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P1 178 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P2 196 bp overlap
ChIP primary-endometrial-stromal-cell_Veh_P1 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P1 204 bp overlap
GATA3 2 datasets
ChIP MCF-7_E2 GSE81510.GATA3.MCF-7_E2 140 bp overlap
ChIP T-47D ENCSR000BMX.GATA3.T-47D 72 bp overlap
GATA3_Nter 2 datasets
ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 63 bp overlap
ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 181 bp overlap
GATA4 8 datasets
ChIP DE DE-GATA4-1 1248 bp overlap
ChIP DE DE-GATA4-2 1248 bp overlap
Motif DE_48h DE_48h-GATA4_MA0482.3 8 bp overlap
Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap
Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap
ChIP foregut GSE117136.GATA4.foregut 940 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 168 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 406 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 1248 bp overlap
ChIP DE DE-GATA6-2 1248 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 1248 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 1248 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 1248 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 1248 bp overlap
ChIP OACP4-C GSE132680.GATA6.OACP4-C 163 bp overlap
ChIP foregut GSE117136.GATA6.foregut 751 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 682 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 309 bp overlap
HNF1B 1 dataset
ChIP PDAC GSE64557.HNF1B.PDAC 125 bp overlap
IKZF1 1 dataset
ChIP K-562 ENCSR395HWC.IKZF1.K-562 494 bp overlap
IRF4 1 dataset
ChIP T-cell GSE136853.IRF4.T-cell 132 bp overlap
JUN 6 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 477 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 441 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 403 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 254 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 356 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 496 bp overlap
JUNB 2 datasets
ChIP HAEC GSE89970.JUNB.HAEC 90 bp overlap
ChIP K-562 ENCSR000DJY.JUNB.K-562 66 bp overlap
JUND 2 datasets
ChIP K-562 ENCSR000EGN.JUND.K-562 71 bp overlap
ChIP K562 ENCFF830LVJ 121 bp overlap
KLF16 1 dataset
ChIP K-562 ENCSR760UVO.KLF16.K-562 128 bp overlap
KLF4 1 dataset
ChIP PDAC GSE64557.KLF4.PDAC 266 bp overlap
LHX2 1 dataset
ChIP retina_pigment GSE60024.LHX2.retina_pigment 62 bp overlap
MAF 1 dataset
ChIP CD4_TH2 GSE72266.MAF.CD4_TH2 97 bp overlap
MAML1 1 dataset
ChIP SCC_4h GSE156486.MAML1.SCC_4h 135 bp overlap
MEIS1 2 datasets
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
Motif DE_72h DE_72h-MEIS1_MA0498.3 5 bp overlap
MYOG 2 datasets
Motif DE_60h DE_60h-MYOG_MA0500.3 8 bp overlap
Motif DE_72h DE_72h-MYOG_MA0500.3 8 bp overlap
Mafg 1 dataset
Motif DE_72h DE_72h-Mafg_MA0659.4 12 bp overlap
Mecom 2 datasets
Motif DE_48h DE_48h-Mecom_MA0029.2 11 bp overlap
Motif DE_72h DE_72h-Mecom_MA0029.2 11 bp overlap
NHLH1 1 dataset
Motif DE_72h DE_72h-NHLH1_MA0048.3 9 bp overlap
NHLH2 1 dataset
Motif DE_72h DE_72h-NHLH2_MA1529.2 16 bp overlap
NKX6-3 2 datasets
Motif DE_48h DE_48h-NKX6-3_MA1530.2 8 bp overlap
Motif DE_72h DE_72h-NKX6-3_MA1530.2 8 bp overlap
NR3C1 2 datasets
ChIP BEAS-2B_TNF_IA1 GSE125623.NR3C1.BEAS-2B_TNF_IA1 79 bp overlap
ChIP BEAS-2B_Veh_IA1 GSE125623.NR3C1.BEAS-2B_Veh_IA1 206 bp overlap
Neurod2 3 datasets
Motif DE_60h DE_60h-Neurod2_MA1993.2 6 bp overlap
Motif DE_72h DE_72h-Neurod2_MA1993.2 6 bp overlap
Motif DE_72h DE_72h-Neurod2_MA1993.2 6 bp overlap
Nfat5 2 datasets
Motif DE_48h DE_48h-Nfat5_MA0606.3 8 bp overlap
Motif DE_72h DE_72h-Nfat5_MA0606.3 8 bp overlap
Nr1h3::Rxra 2 datasets
Motif DE_60h DE_60h-Nr1h3Rxra_MA0494.2 16 bp overlap
Motif DE_72h DE_72h-Nr1h3Rxra_MA0494.2 16 bp overlap
Olig2 3 datasets
Motif DE_60h DE_60h-Olig2_MA1997.2 6 bp overlap
Motif DE_72h DE_72h-Olig2_MA1997.2 6 bp overlap
Motif DE_72h DE_72h-Olig2_MA1997.2 6 bp overlap
PAX5 1 dataset
Motif DE_72h DE_72h-PAX5_MA0014.4 8 bp overlap
PAX7 1 dataset
ChIP H9_DOX GSE98976.PAX7.H9_DOX 112 bp overlap
PRDM1 1 dataset
ChIP HEK293 ENCFF302TBP 163 bp overlap
RELA 2 datasets
ChIP aortic-endothelial-cell_IL1B_D2 GSE139377.RELA.aortic-endothelial-cell_IL1B_D2 54 bp overlap
ChIP aortic-endothelial-cell_IL1B_D39 GSE139377.RELA.aortic-endothelial-cell_IL1B_D39 87 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 166 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 1248 bp overlap
SMAD2_3 8 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 589 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 590 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 403 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 547 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 466 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 720 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 401 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 1248 bp overlap
SMAD3 4 datasets
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 136 bp overlap
ChIP HCC1954 GSE104760.SMAD3.HCC1954 177 bp overlap
ChIP HCC1954_TGFb GSE104760.SMAD3.HCC1954_TGFb 250 bp overlap
ChIP endoderm GSE29422.SMAD3.endoderm 190 bp overlap
SMARCA4 4 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 134 bp overlap
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 178 bp overlap
ChIP K562 ENCFF506JCB 261 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 412 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 358 bp overlap
SMARCE1 1 dataset
ChIP K-562 ENCSR157TCS.SMARCE1.K-562 137 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 299 bp overlap
SOX17_M 2 datasets
ChIP DE_D2 DED2-SOX17-M_Batch_II 261 bp overlap
ChIP DE_D2 DED2-SOX17-M_Batch_II 381 bp overlap
SS18 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 104 bp overlap
STAT1 2 datasets
ChIP FaDu_BB608 GSE78212.STAT1.FaDu_BB608 156 bp overlap
ChIP FaDu_DMSO GSE78212.STAT1.FaDu_DMSO 184 bp overlap
STAT3 7 datasets
ChIP MCF-10A ENCSR000DOQ.STAT3.MCF-10A 51 bp overlap
ChIP MCF-7_jc5836 GSE126004.STAT3.MCF-7_jc5836 102 bp overlap
ChIP MCF-7_jc5838 GSE126004.STAT3.MCF-7_jc5838 221 bp overlap
ChIP MCF-7_jc5840 GSE126004.STAT3.MCF-7_jc5840 214 bp overlap
ChIP MCF10A-Er-Src_TAM GSE115597.STAT3.MCF10A-Er-Src_TAM 60 bp overlap
ChIP T-47D_JC4751 GSE126004.STAT3.T-47D_JC4751 86 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 101 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 235 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 231 bp overlap
TAL1 4 datasets
ChIP K-562_dCas9-KRAB GSE132212.TAL1.K-562_dCas9-KRAB 193 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 166 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 228 bp overlap
ChIP K-562_sgGal4 GSE132212.TAL1.K-562_sgGal4 144 bp overlap
TCF3 1 dataset
ChIP K-562 ENCSR970OJY.TCF3.K-562 175 bp overlap
TEAD1 4 datasets
Motif DE_60h DE_60h-TEAD1_MA0090.4 9 bp overlap
Motif DE_72h DE_72h-TEAD1_MA0090.4 9 bp overlap
ChIP HUCCT1 GSE68296.TEAD1.HUCCT1 112 bp overlap
ChIP keratinocyte GSE138727.TEAD1.keratinocyte 164 bp overlap
TEAD4 3 datasets
Motif DE_60h DE_60h-TEAD4_MA0809.3 8 bp overlap
Motif DE_72h DE_72h-TEAD4_MA0809.3 8 bp overlap
ChIP T-47D_Veh GSE125594.TEAD4.T-47D_Veh 120 bp overlap
TP53 1 dataset
ChIP U2OS_NUT GSE46641.TP53.U2OS_NUT 75 bp overlap
TP63 12 datasets
ChIP BxPC-3 GSE115461.TP63.BxPC-3 147 bp overlap
ChIP HaCaT_LacZ_TGFB GSE60814.TP63.HaCaT_LacZ_TGFB 69 bp overlap
ChIP MCF-10A_Nutlin3A GSE111009.TP63.MCF-10A_Nutlin3A 136 bp overlap
ChIP SUIT-2 GSE115461.TP63.SUIT-2 251 bp overlap
ChIP keratinocyte GSE56674.TP63.keratinocyte 58 bp overlap
ChIP keratinocyte_CISP GSE56674.TP63.keratinocyte_CISP 79 bp overlap
ChIP keratinocyte_D0 GSE59824.TP63.keratinocyte_D0 148 bp overlap
ChIP keratinocyte_D2 GSE59824.TP63.keratinocyte_D2 139 bp overlap
ChIP keratinocyte_D4 GSE59824.TP63.keratinocyte_D4 134 bp overlap
ChIP keratinocyte_D7 GSE59824.TP63.keratinocyte_D7 116 bp overlap
ChIP keratinocyte_epidermal GSE67382.TP63.keratinocyte_epidermal 153 bp overlap
ChIP keratinocyte_epidermal_KDPAF GSE67382.TP63.keratinocyte_epidermal_KDPAF 76 bp overlap
Tcf12 3 datasets
Motif DE_60h DE_60h-Tcf12_MA0521.3 6 bp overlap
Motif DE_72h DE_72h-Tcf12_MA0521.3 6 bp overlap
Motif DE_72h DE_72h-Tcf12_MA0521.3 6 bp overlap
Twist2 3 datasets
Motif DE_60h DE_60h-Twist2_MA0633.3 6 bp overlap
Motif DE_72h DE_72h-Twist2_MA0633.3 6 bp overlap
Motif DE_72h DE_72h-Twist2_MA0633.3 6 bp overlap
YAP1 1 dataset
ChIP MCF-10A GSE97972.YAP1.MCF-10A 66 bp overlap
ZEB1 2 datasets
Motif DE_60h DE_60h-ZEB1_MA0103.4 6 bp overlap
Motif DE_72h DE_72h-ZEB1_MA0103.4 6 bp overlap
ZEB2 1 dataset
ChIP K-562 ENCSR004GKA.ZEB2.K-562 358 bp overlap
ZNF184 2 datasets
Motif DE_48h DE_48h-ZNF184_MA2120.1 13 bp overlap
Motif DE_72h DE_72h-ZNF184_MA2120.1 13 bp overlap
ZNF24 8 datasets
ChIP K-562 ENCSR385AHH.ZNF24.K-562 263 bp overlap
ChIP K-562 ENCSR695EQB.ZNF24.K-562 237 bp overlap
ChIP K-562 ENCSR099NCH.ZNF24.K-562 235 bp overlap
ChIP K-562 ENCSR117WTM.ZNF24.K-562 204 bp overlap
ChIP K562 ENCFF497GLV 263 bp overlap
ChIP K562 ENCFF615YYW 331 bp overlap
ChIP K562 ENCFF615YYW 131 bp overlap
ChIP K562 ENCFF877JCX 124 bp overlap
ZNF274 1 dataset
Motif DE_72h DE_72h-ZNF274_MA1592.2 12 bp overlap
ZNF324 1 dataset
Motif DE_72h DE_72h-ZNF324_MA1977.2 14 bp overlap
ZNF331 1 dataset
Motif DE_72h DE_72h-ZNF331_MA1726.2 10 bp overlap
ZNF532 1 dataset
ChIP NMC24335 GSE96775.ZNF532.NMC24335 589 bp overlap
ZNF549 2 datasets
Motif DE_60h DE_60h-ZNF549_MA1728.2 8 bp overlap
Motif DE_72h DE_72h-ZNF549_MA1728.2 8 bp overlap
ZNF582 1 dataset
ChIP HEK293T GSE78099.ZNF582.HEK293T 261 bp overlap
ZNF750 1 dataset
ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 61 bp overlap
ZNF85 2 datasets
Motif DE_60h DE_60h-ZNF85_MA1720.2 12 bp overlap
Motif DE_72h DE_72h-ZNF85_MA1720.2 12 bp overlap
Zfp335 1 dataset
Motif DE_72h DE_72h-Zfp335_MA2002.2 7 bp overlap
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