chrX : 24,372,245 24,372,673
428 bp 68 TFs 0 linked genes
This 428 bp open chromatin element has no linked target genes and is bound by 68 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chrX:24,367,245 – 24,377,673
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
68 transcription factors
Source
Cell type
AR 1 dataset
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 72 bp overlap
ARNT 1 dataset
ChIP MCF-7_aza GSE85352.ARNT.MCF-7_aza 106 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 203 bp overlap
BCL3 1 dataset
ChIP GM12878 ENCFF854PAY 80 bp overlap
BCOR 4 datasets
ChIP WA01 GSE104690.BCOR.WA01 428 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 237 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 387 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 428 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 58 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 61 bp overlap
CEBPD 1 dataset
Motif DE_12h DE_12h-CEBPD_MA0836.3 8 bp overlap
CHD7 2 datasets
ChIP H1 ENCFF126NLU 389 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 169 bp overlap
CRX 3 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 230 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 258 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 341 bp overlap
CTCF 7 datasets
ChIP B-cell ENCSR000AUV.CTCF.B-cell 55 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 202 bp overlap
ChIP T-47D_Y537S GSE148277.CTCF.T-47D_Y537S 99 bp overlap
ChIP cardiac-muscle ENCSR713SXF.CTCF.cardiac-muscle 229 bp overlap
ChIP hESC_D15 GSE116862.CTCF.hESC_D15 114 bp overlap
ChIP hESC_D7 GSE116862.CTCF.hESC_D7 121 bp overlap
ChIP retina_Hu22 GSE137311.CTCF.retina_Hu22 194 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 150 bp overlap
ERG 1 dataset
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 52 bp overlap
ESR1 1 dataset
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 100 bp overlap
EZH2 1 dataset
ChIP SF8628 GSE94834.EZH2.SF8628 57 bp overlap
FLI1 1 dataset
ChIP UAE_ZINC GSE23730.FLI1.UAE_ZINC 62 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 269 bp overlap
ChIP DE DE-FOXA2-2 305 bp overlap
FOXB1 1 dataset
Motif DE_12h DE_12h-FOXB1_MA0845.1 11 bp overlap
FOXD2 1 dataset
Motif DE_12h DE_12h-FOXD2_MA0847.4 11 bp overlap
FOXP1 1 dataset
ChIP neural-progenitor GSE62718.FOXP1.neural-progenitor 53 bp overlap
GATA6 2 datasets
ChIP DE_D1 S14-DE-d1-GATA6-exp1 277 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 428 bp overlap
HLF 1 dataset
Motif DE_12h DE_12h-HLF_MA0043.4 9 bp overlap
LEF1 1 dataset
ChIP hESC_WNT3A GSE64758.LEF1.hESC_WNT3A 265 bp overlap
MAX 1 dataset
ChIP H1 ENCFF914VQY 112 bp overlap
MED1 1 dataset
ChIP VCaP_DHTTHZ1 GSE125245.MED1.VCaP_DHTTHZ1 159 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 252 bp overlap
MZF1 1 dataset
Motif DE_12h DE_12h-MZF1_MA0056.3 8 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 295 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 231 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 428 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 428 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 249 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 428 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 390 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 321 bp overlap
ChIP hESC GSE20650.NANOG.hESC 248 bp overlap
ChIP hESC GSE18292.NANOG.hESC 169 bp overlap
NFIL3 1 dataset
Motif DE_12h DE_12h-NFIL3_MA0025.3 9 bp overlap
NIPBL 2 datasets
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 219 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 212 bp overlap
NR1D1 1 dataset
Motif DE_12h DE_12h-NR1D1_MA1531.2 14 bp overlap
OGG1 4 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 122 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 116 bp overlap
ChIP HEK293_30_min GSE89017.OGG1.HEK293_30_min 154 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 111 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 257 bp overlap
PAX5 1 dataset
ChIP fetal_testis GSE100639.PAX5.fetal_testis 165 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 352 bp overlap
POU1F1 1 dataset
Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap
POU2F1 1 dataset
Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap
POU2F2 1 dataset
Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap
POU2F3 1 dataset
Motif DE_12h DE_12h-POU2F3_MA0627.3 9 bp overlap
POU3F1 1 dataset
Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
POU3F3 1 dataset
Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap
POU3F4 1 dataset
Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap
POU5F1 14 datasets
Motif DE_12h DE_12h-POU5F1_MA1115.2 7 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 414 bp overlap
ChIP GM23338 ENCFF333SNB 290 bp overlap
ChIP H1 ENCFF698ZAP 180 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 428 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 297 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 401 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 200 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 280 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 301 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 212 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 428 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 428 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 265 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 428 bp overlap
RAD21 3 datasets
ChIP HAP1 GSE126634.RAD21.HAP1 139 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 134 bp overlap
ChIP HEK293_siYAP GSE130135.RAD21.HEK293_siYAP 71 bp overlap
RNF2 1 dataset
ChIP WA09 GSE105028.RNF2.WA09 383 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 86 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 77 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 156 bp overlap
SALL2 1 dataset
ChIP HEK293 GSE145940.SALL2.HEK293 93 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 291 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 308 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 321 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 259 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 402 bp overlap
SMARCC1 3 datasets
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 74 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 275 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 243 bp overlap
SOX2 2 datasets
ChIP hESC GSE18292.SOX2.hESC 95 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 270 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 55 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 179 bp overlap
TBX20 1 dataset
Motif DE_12h DE_12h-TBX20_MA0689.1 11 bp overlap
ZBTB43 2 datasets
ChIP WTC11 ENCFF058JUB 221 bp overlap
ChIP WTC11 ENCFF058JUB 427 bp overlap
ZNF143 1 dataset
Motif DE_12h DE_12h-ZNF143_MA0088.2 16 bp overlap
ZNF410 1 dataset
Motif DE_12h DE_12h-ZNF410_MA0752.2 16 bp overlap
ZNF865 1 dataset
ChIP HepG2 ENCFF472KAQ 213 bp overlap
ZSCAN4 2 datasets
ChIP HEK293 ENCFF381BKT 79 bp overlap
ChIP HEK293 ENCSR211GNP.ZSCAN4.HEK293 141 bp overlap