chr22 : 19,527,447 19,527,704
257 bp 75 TFs 1 linked gene
This 257 bp open chromatin element is linked to CLDN5 and is bound by 75 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
CLDN5 3.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr22:19,522,447 – 19,532,704
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
75 transcription factors
Source
Cell type
AGO1 7 datasets
ChIP Hep-G2 GSE120104.AGO1.Hep-G2 101 bp overlap
ChIP Hep-G2 ENCSR555ZMV.AGO1.Hep-G2 110 bp overlap
ChIP K-562 GSE120104.AGO1.K-562 166 bp overlap
ChIP K-562 ENCSR641BSL.AGO1.K-562 101 bp overlap
ChIP K562 ENCFF025NLP 257 bp overlap
ChIP K562 ENCFF025NLP 100 bp overlap
ChIP K562 ENCFF741BCI 97 bp overlap
BRD4 6 datasets
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 257 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 145 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 257 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 257 bp overlap
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 243 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 112 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 255 bp overlap
CREB1 1 dataset
ChIP K562 ENCFF786DGQ 75 bp overlap
CTCF 1 dataset
ChIP BL41 GSE31485.CTCF.BL41 93 bp overlap
CTCFL 1 dataset
ChIP Kelly_resistant GSE103030.CTCFL.Kelly_resistant 208 bp overlap
E2F4 1 dataset
ChIP K562 ENCFF599EKU 76 bp overlap
ESR1 1 dataset
ChIP U2OS_E2 GSE26110.ESR1.U2OS_E2 257 bp overlap
ETS1 3 datasets
ChIP HUVEC-C GSE41166.ETS1.HUVEC-C 184 bp overlap
ChIP HUVEC-C_VEGF_12H GSE41166.ETS1.HUVEC-C_VEGF_12H 228 bp overlap
ChIP HUVEC-C_VEGF_4H GSE41166.ETS1.HUVEC-C_VEGF_4H 257 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 91 bp overlap
FOXF1 1 dataset
ChIP GIST-T1 GSE106624.FOXF1.GIST-T1 185 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 204 bp overlap
ChIP DE DE-GATA4-2 257 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 257 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 164 bp overlap
GATA6 2 datasets
ChIP DE DE-GATA6-1 223 bp overlap
ChIP DE DE-GATA6-2 257 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 257 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 257 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 196 bp overlap
HDAC2 2 datasets
ChIP RH4_DMSO-6H GSE116344.HDAC2.RH4_DMSO-6H 227 bp overlap
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 257 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 257 bp overlap
ID3 1 dataset
ChIP K-562 ENCSR005NMT.ID3.K-562 257 bp overlap
IFNA1 1 dataset
ChIP Huh-7_GFP GSE110511.IFNA1.Huh-7_GFP 65 bp overlap
IKZF1 3 datasets
ChIP K-562 ENCSR395HWC.IKZF1.K-562 257 bp overlap
ChIP K562 ENCFF348IBL 202 bp overlap
ChIP K562 ENCFF771OHZ 205 bp overlap
JUN 1 dataset
ChIP MDA-MB-231 GSE112444.JUN.MDA-MB-231 85 bp overlap
KDM2B 1 dataset
ChIP K562 ENCFF392YVR 235 bp overlap
KMT2D 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2D.BIN-67_lentivirus-SMARCA4 110 bp overlap
MAFG 2 datasets
ChIP K-562 ENCSR818DQV.MAFG.K-562 257 bp overlap
ChIP K562 ENCFF455EEO 257 bp overlap
MITF 1 dataset
ChIP melanocyte_CTR GSE50681.MITF.melanocyte_CTR 205 bp overlap
MTA1 1 dataset
ChIP Hep-G2 ENCSR983KRB.MTA1.Hep-G2 74 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 257 bp overlap
MYCN 4 datasets
ChIP Kelly GSE94822.MYCN.Kelly 257 bp overlap
ChIP Kelly GSE94782.MYCN.Kelly 110 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 176 bp overlap
ChIP RH4 GSE83726.MYCN.RH4 138 bp overlap
MYF5 1 dataset
ChIP Rh18 GSE84628.MYF5.Rh18 251 bp overlap
MYOD1 5 datasets
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 226 bp overlap
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 257 bp overlap
ChIP RH4 GSE83726.MYOD1.RH4 257 bp overlap
ChIP myoblast GSE50413.MYOD1.myoblast 136 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 212 bp overlap
MYOG 3 datasets
ChIP RH4 GSE83726.MYOG.RH4 196 bp overlap
ChIP RH4_DMSO-6H GSE116344.MYOG.RH4_DMSO-6H 256 bp overlap
ChIP RH4_Entinostat-6H GSE116344.MYOG.RH4_Entinostat-6H 252 bp overlap
NELFA 1 dataset
ChIP K-562_HS GSE112379.NELFA.K-562_HS 142 bp overlap
NELFE 2 datasets
ChIP K-562_HS GSE112379.NELFE.K-562_HS 58 bp overlap
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 156 bp overlap
NEUROD1 1 dataset
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 148 bp overlap
NEUROG2 1 dataset
ChIP MRC-5_NFD_05DPT GSE75910.NEUROG2.MRC-5_NFD_05DPT 191 bp overlap
NR2F1 1 dataset
ChIP K-562 ENCSR970NKQ.NR2F1.K-562 117 bp overlap
NR2F2 5 datasets
ChIP K-562 ENCSR000BRS.NR2F2.K-562 204 bp overlap
ChIP liver ENCFF427MRU 160 bp overlap
ChIP liver ENCFF565JGD 212 bp overlap
ChIP liver ENCSR168SMX.NR2F2.liver 257 bp overlap
ChIP liver ENCSR338MMB.NR2F2.liver 257 bp overlap
NR2F6 1 dataset
ChIP K562 ENCFF239RSE 105 bp overlap
NR4A1 1 dataset
ChIP K562 ENCFF512LEL 91 bp overlap
PAF1 1 dataset
ChIP HCT-116_ab20662 GSE97527.PAF1.HCT-116_ab20662 155 bp overlap
PDX1 1 dataset
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 161 bp overlap
PHF8 1 dataset
ChIP K562 ENCFF217UCA 257 bp overlap
POLR2A 2 datasets
ChIP spleen ENCFF044PYR 202 bp overlap
ChIP spleen ENCFF446ZGT 257 bp overlap
POLR2G 2 datasets
ChIP K562 ENCFF047BLG 67 bp overlap
ChIP K562 ENCFF648YPL 67 bp overlap
RBBP4 2 datasets
ChIP RH5 GSE155861.RBBP4.RH5 257 bp overlap
ChIP SCMC GSE155861.RBBP4.SCMC 227 bp overlap
RELA 27 datasets
ChIP HUVEC-C_TNF GSE43070.RELA.HUVEC-C_TNF 257 bp overlap
ChIP HUVEC-C_TNF GSE53998.RELA.HUVEC-C_TNF 178 bp overlap
ChIP HUVEC-C_TNF-30min GSE121890.RELA.HUVEC-C_TNF-30min 257 bp overlap
ChIP HUVEC-C_TNF-60min GSE121890.RELA.HUVEC-C_TNF-60min 257 bp overlap
ChIP HUVEC-C_TNF_30M GSE34500.RELA.HUVEC-C_TNF_30M 257 bp overlap
ChIP aortic-endothelial-cell_IL1B_D13 GSE139377.RELA.aortic-endothelial-cell_IL1B_D13 257 bp overlap
ChIP aortic-endothelial-cell_IL1B_D14 GSE139377.RELA.aortic-endothelial-cell_IL1B_D14 216 bp overlap
ChIP aortic-endothelial-cell_IL1B_D16 GSE139377.RELA.aortic-endothelial-cell_IL1B_D16 257 bp overlap
ChIP aortic-endothelial-cell_IL1B_D2 GSE139377.RELA.aortic-endothelial-cell_IL1B_D2 221 bp overlap
ChIP aortic-endothelial-cell_IL1B_D21 GSE139377.RELA.aortic-endothelial-cell_IL1B_D21 141 bp overlap
ChIP aortic-endothelial-cell_IL1B_D22 GSE139377.RELA.aortic-endothelial-cell_IL1B_D22 257 bp overlap
ChIP aortic-endothelial-cell_IL1B_D26 GSE139377.RELA.aortic-endothelial-cell_IL1B_D26 201 bp overlap
ChIP aortic-endothelial-cell_IL1B_D27 GSE139377.RELA.aortic-endothelial-cell_IL1B_D27 257 bp overlap
ChIP aortic-endothelial-cell_IL1B_D28 GSE139377.RELA.aortic-endothelial-cell_IL1B_D28 231 bp overlap
ChIP aortic-endothelial-cell_IL1B_D3 GSE139377.RELA.aortic-endothelial-cell_IL1B_D3 226 bp overlap
ChIP aortic-endothelial-cell_IL1B_D31 GSE139377.RELA.aortic-endothelial-cell_IL1B_D31 175 bp overlap
ChIP aortic-endothelial-cell_IL1B_D33 GSE139377.RELA.aortic-endothelial-cell_IL1B_D33 75 bp overlap
ChIP aortic-endothelial-cell_IL1B_D38 GSE139377.RELA.aortic-endothelial-cell_IL1B_D38 174 bp overlap
ChIP aortic-endothelial-cell_IL1B_D39 GSE139377.RELA.aortic-endothelial-cell_IL1B_D39 257 bp overlap
ChIP aortic-endothelial-cell_IL1B_D4 GSE139377.RELA.aortic-endothelial-cell_IL1B_D4 137 bp overlap
ChIP aortic-endothelial-cell_IL1B_D40 GSE139377.RELA.aortic-endothelial-cell_IL1B_D40 217 bp overlap
ChIP aortic-endothelial-cell_IL1B_D41 GSE139377.RELA.aortic-endothelial-cell_IL1B_D41 208 bp overlap
ChIP aortic-endothelial-cell_IL1B_D53 GSE139377.RELA.aortic-endothelial-cell_IL1B_D53 179 bp overlap
ChIP aortic-endothelial-cell_IL1B_D6 GSE139377.RELA.aortic-endothelial-cell_IL1B_D6 197 bp overlap
ChIP aortic-endothelial-cell_IL1B_D7 GSE139377.RELA.aortic-endothelial-cell_IL1B_D7 257 bp overlap
ChIP aortic-endothelial-cell_IL1B_D8 GSE139377.RELA.aortic-endothelial-cell_IL1B_D8 219 bp overlap
ChIP aortic-endothelial-cell_IL1B_D9 GSE139377.RELA.aortic-endothelial-cell_IL1B_D9 244 bp overlap
RERE 1 dataset
ChIP K562 ENCFF203AHY 257 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 239 bp overlap
SMC1 1 dataset
ChIP HCAEC GSE101921.SMC1.HCAEC 257 bp overlap
SMC1A-B 1 dataset
ChIP Kelly_shLUC-res GSE115248.SMC1A-B.Kelly_shLUC-res 174 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 180 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 229 bp overlap
SOX8 1 dataset
ChIP RH4_DMSO-6H GSE116344.SOX8.RH4_DMSO-6H 257 bp overlap
SPI1 1 dataset
ChIP EM-3 GSE128834.SPI1.EM-3 50 bp overlap
SRSF3 1 dataset
ChIP K-562 GSE120104.SRSF3.K-562 121 bp overlap
STAG1 1 dataset
ChIP K562 ENCFF674HJF 122 bp overlap
STAG2 1 dataset
ChIP HCAEC GSE101921.STAG2.HCAEC 215 bp overlap
SUPT5H 5 datasets
ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 257 bp overlap
ChIP DLD-1_NELFCD-AID_treated GSE144786.SUPT5H.DLD-1_NELFCD-AID_treated 178 bp overlap
ChIP HCT-116_DMSO GSE138548.SUPT5H.HCT-116_DMSO 146 bp overlap
ChIP U2OS_siMYC GSE115365.SUPT5H.U2OS_siMYC 183 bp overlap
ChIP U2OS_siMYC_ON GSE115365.SUPT5H.U2OS_siMYC_ON 181 bp overlap
TBX2 1 dataset
ChIP Kelly GSE94822.TBX2.Kelly 252 bp overlap
TEAD4 1 dataset
ChIP MCF-7_BLRP_WT_Veh GSE125594.TEAD4.MCF-7_BLRP_WT_Veh 118 bp overlap
TFAP4 2 datasets
ChIP K562 ENCFF727PXG 257 bp overlap
ChIP K562 ENCFF727PXG 105 bp overlap
TFE3 1 dataset
ChIP K562 ENCFF697ABG 217 bp overlap
TRIM28 1 dataset
ChIP AF22 GSE84259.TRIM28.AF22 113 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 239 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 239 bp overlap
YY1 1 dataset
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 223 bp overlap
ZEB1 1 dataset
ChIP neuron_bipolar_doxy_4d ENCSR418KUS.ZEB1.neuron_bipolar_doxy_4d 149 bp overlap
ZNF165 1 dataset
ChIP K562 ENCFF039BMN 257 bp overlap
ZNF3 1 dataset
ChIP K-562 ENCSR195QFV.ZNF3.K-562 174 bp overlap
ZNF700 1 dataset
ChIP K562 ENCFF657OXY 257 bp overlap
ZNF711 1 dataset
ChIP HEK293T GSE145160.ZNF711.HEK293T 256 bp overlap