chr2 : 17,747,989 17,748,437
448 bp 60 TFs 2 linked genes
This 448 bp open chromatin element is linked to SMC6 and GEN1 and is bound by 60 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
SMC6 5.4 kb Proximal Proximity
GEN1 5.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:17,742,989 – 17,753,437
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
60 transcription factors
Source
Cell type
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 137 bp overlap
ATF3 1 dataset
ChIP K-562 ENCSR028UIU.ATF3.K-562 92 bp overlap
BRD4 2 datasets
ChIP CD4_JG1 GSE33281.BRD4.CD4_JG1 168 bp overlap
ChIP CLL_patient1 GSE109411.BRD4.CLL_patient1 258 bp overlap
CHD4 1 dataset
ChIP 501-mel GSE134848.CHD4.501-mel 161 bp overlap
CHD7 1 dataset
ChIP WA01 ENCSR000AVA.CHD7.WA01 147 bp overlap
CREB1 1 dataset
ChIP LNCaP-abl_SHFOXA1 GSE63034.CREB1.LNCaP-abl_SHFOXA1 224 bp overlap
CTCF 1 dataset
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 174 bp overlap
DAXX 1 dataset
ChIP PC-3_DAXX GSE68647.DAXX.PC-3_DAXX 165 bp overlap
DPF2 1 dataset
ChIP K562 ENCFF775HUO 154 bp overlap
DUX4 2 datasets
Motif DE_12h DE_12h-DUX4_MA0468.1 11 bp overlap
Motif ES_0h ES_0h-DUX4_MA0468.1 11 bp overlap
EBF1 2 datasets
Motif DE_12h DE_12h-EBF1_MA0154.5 11 bp overlap
Motif ES_0h ES_0h-EBF1_MA0154.5 11 bp overlap
EP300 1 dataset
ChIP WA01 ENCSR000BKK.EP300.WA01 186 bp overlap
Ebf4 2 datasets
Motif DE_12h DE_12h-Ebf4_MA2122.1 11 bp overlap
Motif ES_0h ES_0h-Ebf4_MA2122.1 11 bp overlap
FOS 2 datasets
ChIP MCF-7 ENCFF282FWZ 235 bp overlap
ChIP MCF-7 ENCSR569XNP.FOS.MCF-7 325 bp overlap
FOSL2 5 datasets
ChIP A-549 ENCSR448TVS.FOSL2.A-549 415 bp overlap
ChIP A-549 ENCSR000BQO.FOSL2.A-549 230 bp overlap
ChIP A549 ENCFF195CES 312 bp overlap
Motif DE_12h DE_12h-FOSL2_MA0478.2 10 bp overlap
Motif ES_0h ES_0h-FOSL2_MA0478.2 10 bp overlap
GATA2 1 dataset
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 184 bp overlap
GATA4 1 dataset
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 175 bp overlap
HOXC13 2 datasets
Motif DE_12h DE_12h-HOXC13_MA0907.2 9 bp overlap
Motif ES_0h ES_0h-HOXC13_MA0907.2 9 bp overlap
JUN 2 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 95 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 248 bp overlap
JUND 1 dataset
ChIP WA01 ENCSR000EBZ.JUND.WA01 92 bp overlap
KLF1 1 dataset
Motif ES_0h ES_0h-KLF1_MA0493.3 8 bp overlap
KLF2 1 dataset
Motif ES_0h ES_0h-KLF2_MA1515.2 8 bp overlap
KLF4 4 datasets
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 142 bp overlap
Motif ES_0h ES_0h-KLF4_MA0039.5 8 bp overlap
ChIP HAP1 GSE130417.KLF4.HAP1 253 bp overlap
ChIP hiPSC GSE56567.KLF4.hiPSC 208 bp overlap
KLF5 1 dataset
Motif ES_0h ES_0h-KLF5_MA0599.1 10 bp overlap
MEIS1 1 dataset
ChIP CHRF28811 ERR063469.MEIS1.CHRF28811 312 bp overlap
MXI1 2 datasets
Motif DE_12h DE_12h-MXI1_MA1108.3 6 bp overlap
Motif ES_0h ES_0h-MXI1_MA1108.3 6 bp overlap
NANOG 10 datasets
ChIP GM23338 ENCFF065NZG 270 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 155 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 448 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 327 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 231 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 409 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 448 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 361 bp overlap
ChIP hESC GSE18292.NANOG.hESC 93 bp overlap
PBX2 1 dataset
ChIP K562 ENCFF286KMN 222 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 200 bp overlap
PKNOX1 4 datasets
ChIP HEK293T ENCFF174WDB 116 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 252 bp overlap
ChIP K-562 ENCSR115SMW.PKNOX1.K-562 50 bp overlap
ChIP K562 ENCFF236IUS 87 bp overlap
POLR2A 1 dataset
ChIP H1 ENCFF566JSR 283 bp overlap
POU2F2 1 dataset
Motif ES_0h ES_0h-POU2F2_MA0507.3 13 bp overlap
POU3F1 1 dataset
ChIP SKM-1_D2 GSE93706.POU3F1.SKM-1_D2 237 bp overlap
POU3F2 1 dataset
ChIP hiPSC GSE149017.POU3F2.hiPSC 124 bp overlap
POU5F1 18 datasets
ChIP BG03 GSE21614.POU5F1.BG03 153 bp overlap
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 260 bp overlap
ChIP GM23338 ENCFF333SNB 272 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 448 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 388 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 386 bp overlap
ChIP OSKM GSE81899.POU5F1.OSKM 221 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 179 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 161 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 295 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 249 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 148 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 413 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 448 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 305 bp overlap
ChIP hiPSC GSE149017.POU5F1.hiPSC 228 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 217 bp overlap
PRDM15 1 dataset
ChIP WTC11 ENCFF108TMF 172 bp overlap
Pou5f1::Sox2 2 datasets
Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap
RAD21 3 datasets
ChIP HAP1 GSE152721.RAD21.HAP1 448 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 448 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 306 bp overlap
RBPJ 2 datasets
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
Motif ES_0h ES_0h-RBPJ_MA1116.2 6 bp overlap
RUNX1 1 dataset
ChIP MV4-11 GSE79899.RUNX1.MV4-11 154 bp overlap
SIN3A 1 dataset
ChIP A549 ENCFF752ATT 211 bp overlap
SMARCA4 16 datasets
ChIP A-549_AG15677 GSE132290.SMARCA4.A-549_AG15677 235 bp overlap
ChIP A-549_AG15678 GSE132290.SMARCA4.A-549_AG15678 208 bp overlap
ChIP A-549_AG15684 GSE132290.SMARCA4.A-549_AG15684 254 bp overlap
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 179 bp overlap
ChIP A-549_AG15686 GSE132290.SMARCA4.A-549_AG15686 230 bp overlap
ChIP A-549_AG15689 GSE132290.SMARCA4.A-549_AG15689 299 bp overlap
ChIP A-549_AG15721 GSE132290.SMARCA4.A-549_AG15721 289 bp overlap
ChIP A-549_AG15722 GSE132290.SMARCA4.A-549_AG15722 215 bp overlap
ChIP A-549_AG15723 GSE132290.SMARCA4.A-549_AG15723 248 bp overlap
ChIP A-549_AG15724 GSE132290.SMARCA4.A-549_AG15724 142 bp overlap
ChIP A-549_AG15725 GSE132290.SMARCA4.A-549_AG15725 221 bp overlap
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 304 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 426 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 367 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 203 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 220 bp overlap
SMARCB1 1 dataset
ChIP TTC-1240_R377H GSE124903.SMARCB1.TTC-1240_R377H 247 bp overlap
SMARCC1 5 datasets
ChIP TTC-1240 GSE124903.SMARCC1.TTC-1240 147 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCC1.TTC-1240_R377H 215 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCC1.TTC-1240_delC 448 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 232 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 223 bp overlap
SOX2 2 datasets
ChIP hiPSC GSE56567.SOX2.hiPSC 293 bp overlap
ChIP hiPSC_3s2 GSE81899.SOX2.hiPSC_3s2 278 bp overlap
SP1 3 datasets
ChIP A-549 ENCSR000BPE.SP1.A-549 91 bp overlap
ChIP A-549 ENCSR000BPE.SP1.A-549 157 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 373 bp overlap
Stat5b 2 datasets
Motif DE_12h DE_12h-Stat5b_MA1625.2 9 bp overlap
Motif ES_0h ES_0h-Stat5b_MA1625.2 9 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 162 bp overlap
TAF7 1 dataset
ChIP H1 ENCFF061XZZ 79 bp overlap
TBP 3 datasets
ChIP WA01 ENCSR000ECB.TBP.WA01 73 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 233 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 165 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 225 bp overlap
TEAD4 1 dataset
ChIP HepG2 ENCFF006QNB 68 bp overlap
Thap11 2 datasets
Motif DE_12h DE_12h-Thap11_MA1573.2 14 bp overlap
Motif ES_0h ES_0h-Thap11_MA1573.2 14 bp overlap
ZBTB26 2 datasets
Motif DE_12h DE_12h-ZBTB26_MA1579.2 8 bp overlap
Motif ES_0h ES_0h-ZBTB26_MA1579.2 8 bp overlap
ZBTB40 3 datasets
ChIP K-562 ENCSR237VLT.ZBTB40.K-562 223 bp overlap
ChIP MCF-7 ENCFF044DWL 376 bp overlap
ChIP MCF-7 ENCFF044DWL 320 bp overlap
ZNF354C 2 datasets
Motif DE_12h DE_12h-ZNF354C_MA0130.1 6 bp overlap
Motif ES_0h ES_0h-ZNF354C_MA0130.1 6 bp overlap
ZNF778 1 dataset
ChIP HEK293 GSE76494.ZNF778.HEK293 210 bp overlap
Zfx 2 datasets
Motif DE_12h DE_12h-Zfx_MA0146.3 10 bp overlap
Motif ES_0h ES_0h-Zfx_MA0146.3 10 bp overlap