chr20 : 56,909,645 56,910,383
738 bp 68 TFs 1 linked gene
This 738 bp open chromatin element is linked to TFAP2C and is bound by 68 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
TFAP2C 280.7 kb Distal Multiome+HiCAR
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr20:56,904,645 – 56,915,383
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
68 transcription factors
Source
Cell type
AHR 1 dataset
ChIP MCF-7_TCDD_45min GSE90550.AHR.MCF-7_TCDD_45min 215 bp overlap
AR 10 datasets
ChIP LNCaP_r1881 GSE94682.AR.LNCaP_r1881 207 bp overlap
ChIP VCaP GSE148358.AR.VCaP 153 bp overlap
ChIP VCaP GSE148358.AR.VCaP 217 bp overlap
ChIP prostate-cancer_PDX_35 GSE130408.AR.prostate-cancer_PDX_35 167 bp overlap
ChIP prostate-cancer_PDX_58 GSE130408.AR.prostate-cancer_PDX_58 120 bp overlap
ChIP prostate_1239_T GSE130408.AR.prostate_1239_T 229 bp overlap
ChIP prostate_1636_T GSE130408.AR.prostate_1636_T 325 bp overlap
ChIP prostate_1798_T GSE130408.AR.prostate_1798_T 532 bp overlap
ChIP prostate_1816_T GSE130408.AR.prostate_1816_T 434 bp overlap
ChIP prostate_2752_T GSE130408.AR.prostate_2752_T 396 bp overlap
ARID1A 2 datasets
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 616 bp overlap
ChIP MCF-7_Fulvestrant GSE123284.ARID1A.MCF-7_Fulvestrant 391 bp overlap
ASH2L 2 datasets
ChIP VCaP GSE60841.ASH2L.VCaP 376 bp overlap
ChIP VCaP_R1881 GSE60841.ASH2L.VCaP_R1881 234 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 211 bp overlap
BRD4 2 datasets
ChIP Jurkat GSE83777.BRD4.Jurkat 455 bp overlap
ChIP MOLT-4_DMSO GSE79288.BRD4.MOLT-4_DMSO 222 bp overlap
CBX1 1 dataset
ChIP Hep-G2 ENCSR819WZE.CBX1.Hep-G2 185 bp overlap
CDK7 1 dataset
ChIP Jurkat GSE83777.CDK7.Jurkat 284 bp overlap
CTCF 2 datasets
ChIP MCF-7 ENCFF139NQI 180 bp overlap
ChIP body of pancreas ENCFF881RGF 163 bp overlap
E2F1 1 dataset
ChIP LNCaP_shRB GSE94958.E2F1.LNCaP_shRB 161 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 241 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 117 bp overlap
EGR1 1 dataset
ChIP MCF-7 ENCSR000BUX.EGR1.MCF-7 116 bp overlap
ERG 1 dataset
ChIP Jurkat GSE49091.ERG.Jurkat 178 bp overlap
ESR1 5 datasets
ChIP MCF-7 GSE35109.ESR1.MCF-7 151 bp overlap
ChIP MCF-7_PROG GSE68355.ESR1.MCF-7_PROG 174 bp overlap
ChIP MCF-7_RUNX2_DOX GSE86538.ESR1.MCF-7_RUNX2_DOX 106 bp overlap
ChIP MCF-7_estradiol-DHT_45min GSE99626.ESR1.MCF-7_estradiol-DHT_45min 171 bp overlap
ChIP breast_tumor_Male_7 GSE104399.ESR1.breast_tumor_Male_7 237 bp overlap
ETV6 1 dataset
ChIP GM12878 ENCSR597VGC.ETV6.GM12878 518 bp overlap
FOSL1 1 dataset
ChIP BT-549 GSE112961.FOSL1.BT-549 144 bp overlap
FOXA1 31 datasets
ChIP LNCaP_SHFOXA1_R1881 GSE37345.FOXA1.LNCaP_SHFOXA1_R1881 108 bp overlap
ChIP LNCaP_TFS GSE123618.FOXA1.LNCaP_TFS 186 bp overlap
ChIP LNCaP_VEH GSE114266.FOXA1.LNCaP_VEH 220 bp overlap
ChIP MCF-7 GSE72249.FOXA1.MCF-7 163 bp overlap
ChIP MCF-7-TAMR-1_4OH-Tam GSE75201.FOXA1.MCF-7-TAMR-1_4OH-Tam 130 bp overlap
ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 510 bp overlap
ChIP MCF-7_JC4690 GSE126004.FOXA1.MCF-7_JC4690 439 bp overlap
ChIP MCF-7_JC4697 GSE126004.FOXA1.MCF-7_JC4697 309 bp overlap
ChIP MCF-7_TNF GSE59530.FOXA1.MCF-7_TNF 112 bp overlap
ChIP VCaP_ETOH24H GSE58428.FOXA1.VCaP_ETOH24H 251 bp overlap
ChIP breast_tumor_Female_3 GSE104399.FOXA1.breast_tumor_Female_3 252 bp overlap
ChIP primary-breast-cancer_B1_DSG GSE114737.FOXA1.primary-breast-cancer_B1_DSG 227 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.FOXA1.primary-breast-cancer_B2_DSG 184 bp overlap
ChIP primary-breast-cancer_B4_DSG GSE114737.FOXA1.primary-breast-cancer_B4_DSG 464 bp overlap
ChIP primary-prostate-cancer_G2_DSG GSE114737.FOXA1.primary-prostate-cancer_G2_DSG 662 bp overlap
ChIP primary-prostate-cancer_P2_DSG GSE114737.FOXA1.primary-prostate-cancer_P2_DSG 397 bp overlap
ChIP prostate-cancer_PDX_136 GSE130408.FOXA1.prostate-cancer_PDX_136 103 bp overlap
ChIP prostate-cancer_PDX_189-3 GSE130408.FOXA1.prostate-cancer_PDX_189-3 81 bp overlap
ChIP prostate_2480 GSE130408.FOXA1.prostate_2480 351 bp overlap
ChIP prostate_2483_T GSE130408.FOXA1.prostate_2483_T 461 bp overlap
ChIP prostate_P13_T GSE130408.FOXA1.prostate_P13_T 411 bp overlap
ChIP prostate_P19 GSE130408.FOXA1.prostate_P19 159 bp overlap
ChIP prostate_P19_T GSE130408.FOXA1.prostate_P19_T 159 bp overlap
ChIP prostate_P1_T GSE130408.FOXA1.prostate_P1_T 291 bp overlap
ChIP prostate_P23 GSE130408.FOXA1.prostate_P23 233 bp overlap
ChIP prostate_P23_T GSE130408.FOXA1.prostate_P23_T 596 bp overlap
ChIP prostate_P29 GSE130408.FOXA1.prostate_P29 221 bp overlap
ChIP prostate_P29_T GSE130408.FOXA1.prostate_P29_T 156 bp overlap
ChIP prostate_P5_T GSE130408.FOXA1.prostate_P5_T 562 bp overlap
ChIP prostate_P7 GSE130408.FOXA1.prostate_P7 200 bp overlap
ChIP prostate_P7_T GSE130408.FOXA1.prostate_P7_T 442 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 724 bp overlap
ChIP DE DE-FOXA2-2 705 bp overlap
GATA3 1 dataset
ChIP Jurkat GSE76181.GATA3.Jurkat 361 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 628 bp overlap
ChIP DE DE-GATA4-2 640 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 483 bp overlap
ChIP DE DE-GATA6-2 484 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 485 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 408 bp overlap
GATAD2B 1 dataset
ChIP MCF-7 ENCFF718AXM 194 bp overlap
GRHL1 1 dataset
ChIP MCF-7 GSE140185.GRHL1.MCF-7 193 bp overlap
GRHL2 6 datasets
ChIP HBE GSE46194.GRHL2.HBE 201 bp overlap
ChIP MCF-7 GSE109820.GRHL2.MCF-7 204 bp overlap
ChIP MCF-7 GSE99680.GRHL2.MCF-7 191 bp overlap
ChIP MCF-7-WS8_VEH GSE113092.GRHL2.MCF-7-WS8_VEH 296 bp overlap
ChIP MCF-7_E2_45min GSE109820.GRHL2.MCF-7_E2_45min 264 bp overlap
ChIP T-47D GSE99680.GRHL2.T-47D 168 bp overlap
GTF2F1 1 dataset
ChIP MCF-7 ENCFF576OTX 305 bp overlap
HDAC2 1 dataset
ChIP MCF-7 ENCSR000BTP.HDAC2.MCF-7 133 bp overlap
HOXB13 10 datasets
ChIP prostate_2483_T GSE130408.HOXB13.prostate_2483_T 160 bp overlap
ChIP prostate_P13_T GSE130408.HOXB13.prostate_P13_T 327 bp overlap
ChIP prostate_P19 GSE130408.HOXB13.prostate_P19 212 bp overlap
ChIP prostate_P1_T GSE130408.HOXB13.prostate_P1_T 357 bp overlap
ChIP prostate_P23 GSE130408.HOXB13.prostate_P23 207 bp overlap
ChIP prostate_P23_T GSE130408.HOXB13.prostate_P23_T 98 bp overlap
ChIP prostate_P29 GSE130408.HOXB13.prostate_P29 175 bp overlap
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 347 bp overlap
ChIP prostate_P5_T GSE130408.HOXB13.prostate_P5_T 259 bp overlap
ChIP prostate_P7_T GSE130408.HOXB13.prostate_P7_T 351 bp overlap
HSF1 1 dataset
ChIP MCF-7 ENCFF586GQF 271 bp overlap
KDM1A 1 dataset
ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 738 bp overlap
KMT2A 1 dataset
ChIP L826 GSE83671.KMT2A.L826 205 bp overlap
LMO1 1 dataset
ChIP Jurkat GSE94391.LMO1.Jurkat 263 bp overlap
MAX 2 datasets
ChIP MCF-7 ENCFF169IXS 289 bp overlap
ChIP MCF-7 ENCSR000BUL.MAX.MCF-7 163 bp overlap
MED1 1 dataset
ChIP VCaP GSE148358.MED1.VCaP 353 bp overlap
MEIS2 1 dataset
Motif DE_48h DE_48h-MEIS2_MA1640.2 9 bp overlap
MNT 1 dataset
ChIP MCF-7 ENCFF144ZFZ 247 bp overlap
MTA1 1 dataset
ChIP MCF-7 ENCSR348JOJ.MTA1.MCF-7 167 bp overlap
MYB 3 datasets
ChIP Jurkat GSE59657.MYB.Jurkat 607 bp overlap
ChIP MOLT-3 GSE59657.MYB.MOLT-3 574 bp overlap
ChIP PF-382 GSE94000.MYB.PF-382 526 bp overlap
MYC 5 datasets
ChIP LNCaP GSE117430.MYC.LNCaP 245 bp overlap
ChIP MCF-7 ENCFF394LGD 190 bp overlap
ChIP MCF-7 ENCFF542NWJ 217 bp overlap
ChIP MCF-7 ENCSR000DMQ.MYC.MCF-7 153 bp overlap
ChIP U2OS_Doxy GSE77356.MYC.U2OS_Doxy 82 bp overlap
MYCN 3 datasets
ChIP CHP-134 GSE129588.MYCN.CHP-134 72 bp overlap
ChIP LNCaP_DHT GSE117304.MYCN.LNCaP_DHT 264 bp overlap
ChIP LNCaP_EtOH GSE117304.MYCN.LNCaP_EtOH 255 bp overlap
NOTCH1 1 dataset
ChIP HPBALL GSE39263.NOTCH1.HPBALL 482 bp overlap
PAX6 1 dataset
Motif DE_48h DE_48h-PAX6_MA0069.1 14 bp overlap
PBX1 1 dataset
ChIP RCH-ACV GSE85988.PBX1.RCH-ACV 308 bp overlap
PGR 1 dataset
ChIP MCF-7_PROG GSE68355.PGR.MCF-7_PROG 173 bp overlap
POLR2A 3 datasets
ChIP body of pancreas ENCFF675RCN 558 bp overlap
ChIP body of pancreas ENCFF727UBE 403 bp overlap
ChIP prostate gland ENCFF881OMH 169 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 264 bp overlap
POU5F1 2 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 311 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 334 bp overlap
RAD51 2 datasets
ChIP MCF-7 ENCFF128SEB 306 bp overlap
ChIP MCF-7 ENCSR442VBJ.RAD51.MCF-7 279 bp overlap
RBPJ 1 dataset
Motif DE_48h DE_48h-RBPJ_MA1116.2 6 bp overlap
RUNX1 2 datasets
ChIP Jurkat GSE68976.RUNX1.Jurkat 231 bp overlap
ChIP Jurkat GSE76181.RUNX1.Jurkat 226 bp overlap
RUNX2 1 dataset
ChIP Karpas-45 GSE151819.RUNX2.Karpas-45 447 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 738 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 645 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 278 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 487 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 624 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 302 bp overlap
SMARCA4 3 datasets
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 309 bp overlap
ChIP MCF-7 GSE140185.SMARCA4.MCF-7 201 bp overlap
ChIP MCF-7_parental GSE123284.SMARCA4.MCF-7_parental 386 bp overlap
SMARCB1 4 datasets
ChIP MCF-7 GSE123284.SMARCB1.MCF-7 272 bp overlap
ChIP MCF-7_4-hydroxytamoxifen GSE123284.SMARCB1.MCF-7_4-hydroxytamoxifen 229 bp overlap
ChIP MCF-7_estrogen GSE123284.SMARCB1.MCF-7_estrogen 282 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 231 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 494 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 571 bp overlap
STAT3 13 datasets
ChIP HCC1187 GSE152203.STAT3.HCC1187 90 bp overlap
ChIP MCF-7_jc5834 GSE126004.STAT3.MCF-7_jc5834 390 bp overlap
ChIP MCF-7_jc5836 GSE126004.STAT3.MCF-7_jc5836 434 bp overlap
ChIP MCF-7_jc5838 GSE126004.STAT3.MCF-7_jc5838 460 bp overlap
ChIP MCF-7_jc5840 GSE126004.STAT3.MCF-7_jc5840 473 bp overlap
ChIP MCF-7_jc5842 GSE126004.STAT3.MCF-7_jc5842 208 bp overlap
ChIP MCF-7_jc5844 GSE126004.STAT3.MCF-7_jc5844 238 bp overlap
ChIP MCF-7_jc5848 GSE126004.STAT3.MCF-7_jc5848 329 bp overlap
ChIP MDA-MB-361 GSE152203.STAT3.MDA-MB-361 208 bp overlap
ChIP T-47D_JC4753 GSE126004.STAT3.T-47D_JC4753 188 bp overlap
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 277 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 201 bp overlap
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 249 bp overlap
TAL1 1 dataset
ChIP MOLT-3 GSE59657.TAL1.MOLT-3 512 bp overlap
TCF3 1 dataset
ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 400 bp overlap
Thap11 1 dataset
Motif DE_48h DE_48h-Thap11_MA1573.2 14 bp overlap
USF1 1 dataset
ChIP SK-N-SH ENCSR000BMF.USF1.SK-N-SH 111 bp overlap
YY1 1 dataset
ChIP ALL GSE145549.YY1.ALL 83 bp overlap
ZBTB42 1 dataset
ChIP HEK293 GSE76494.ZBTB42.HEK293 109 bp overlap
ZNF687 1 dataset
ChIP MCF-7 ENCFF440BFX 254 bp overlap