chr20 : 47,761,548 47,762,222
674 bp 87 TFs 2 linked genes
This 674 bp open chromatin element is linked to SULF2 and NCOA3 and is bound by 87 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
SULF2 23.7 kb Distal Multiome
NCOA3 259.9 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr20:47,756,548 – 47,767,222
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
87 transcription factors
Source
Cell type
BCOR 2 datasets
ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 156 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 212 bp overlap
BRD4 8 datasets
ChIP MM1-S GSE45984.BRD4.MM1-S 202 bp overlap
ChIP MM1-S GSE43743.BRD4.MM1-S 156 bp overlap
ChIP MM1-S_DMSO GSE42161.BRD4.MM1-S_DMSO 162 bp overlap
ChIP MM1-S_JQ1_150NM GSE49224.BRD4.MM1-S_JQ1_150NM 254 bp overlap
ChIP MM1-S_JQ1_50NM GSE42355.BRD4.MM1-S_JQ1_50NM 225 bp overlap
ChIP MM1-S_JQ1_5NM GSE42355.BRD4.MM1-S_JQ1_5NM 251 bp overlap
ChIP MM1-S_JQ1_5NM GSE42355.BRD4.MM1-S_JQ1_5NM 92 bp overlap
ChIP MM1-S_JQ1_5UM GSE42355.BRD4.MM1-S_JQ1_5UM 141 bp overlap
CBX1 1 dataset
ChIP Hep-G2 ENCSR819WZE.CBX1.Hep-G2 224 bp overlap
CDK9 1 dataset
ChIP MM1-S_DMSO GSE42161.CDK9.MM1-S_DMSO 307 bp overlap
CHCHD3 1 dataset
ChIP HepG2 ENCFF430RKB 471 bp overlap
Cebpa 3 datasets
ChIP BLaER1 ENCFF274GAT 59 bp overlap
ChIP BLaER1 ENCFF364PUR 532 bp overlap
ChIP BLaER1 ENCFF460KDD 249 bp overlap
Crx 1 dataset
Motif DE_48h DE_48h-Crx_MA0467.3 6 bp overlap
DDX20 1 dataset
ChIP MCF-7 ENCFF142TOQ 245 bp overlap
DPF2 1 dataset
ChIP GM12878 ENCSR509FWH.DPF2.GM12878 104 bp overlap
Dmbx1 1 dataset
Motif DE_48h DE_48h-Dmbx1_MA0883.2 10 bp overlap
E2F1 3 datasets
ChIP MCF-7 ENCFF692OYJ 286 bp overlap
ChIP MCF-7 ENCFF692OYJ 87 bp overlap
ChIP MM1-S GSE80661.E2F1.MM1-S 234 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 144 bp overlap
EGR2 1 dataset
ChIP HEK293 ENCFF336LFH 193 bp overlap
ELF4 1 dataset
ChIP HepG2 ENCFF752OAT 591 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 330 bp overlap
EZH2 2 datasets
ChIP A-1847 GSE95643.EZH2.A-1847 234 bp overlap
ChIP LNCaP GSE39459.EZH2.LNCaP 206 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 632 bp overlap
ChIP DE DE-FOXA2-2 512 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 674 bp overlap
ChIP DE DE-GATA4-2 674 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 167 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 674 bp overlap
ChIP DE DE-GATA6-2 674 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 646 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 674 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 674 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 674 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 674 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 674 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 674 bp overlap
GFI1 1 dataset
Motif DE_48h DE_48h-GFI1_MA0038.3 11 bp overlap
GSC 1 dataset
Motif DE_48h DE_48h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_48h DE_48h-GSC2_MA0891.2 6 bp overlap
GTF2F1 1 dataset
ChIP MCF-7 ENCFF576OTX 361 bp overlap
Gfi1B 1 dataset
Motif DE_48h DE_48h-Gfi1B_MA0483.2 10 bp overlap
HCFC1 1 dataset
ChIP MCF-7 ENCFF595ZTV 192 bp overlap
IRF4 2 datasets
ChIP NCI-H929 GSE142493.IRF4.NCI-H929 175 bp overlap
ChIP NCI-H929 GSE56857.IRF4.NCI-H929 175 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 417 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 506 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 329 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 385 bp overlap
MAFB 1 dataset
ChIP islet ERP004003.MAFB.islet 177 bp overlap
MAFK 2 datasets
ChIP MCF-7 ENCFF558JLG 316 bp overlap
ChIP MCF-7 ENCSR555PBN.MAFK.MCF-7 165 bp overlap
MED1 6 datasets
ChIP MM1-S_BIORU GSE45984.MED1.MM1-S_BIORU 187 bp overlap
ChIP MM1-S_JQ1 GSE42161.MED1.MM1-S_JQ1 341 bp overlap
ChIP MM1-S_JQ1 GSE42161.MED1.MM1-S_JQ1 194 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.MED1.MM1-S_JQ1_500NM 237 bp overlap
ChIP MM1-S_JQ1_50NM GSE49224.MED1.MM1-S_JQ1_50NM 199 bp overlap
ChIP MM1-S_JQ1_5NM GSE49224.MED1.MM1-S_JQ1_5NM 206 bp overlap
MEF2B 1 dataset
ChIP GM12878 ENCSR177VFS.MEF2B.GM12878 403 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 265 bp overlap
MSX2 1 dataset
ChIP MCF-7 ENCFF179YRV 297 bp overlap
MYB 1 dataset
ChIP PF-382 GSE94000.MYB.PF-382 196 bp overlap
MYC 2 datasets
ChIP MM1-S_DMSO GSE36354.MYC.MM1-S_DMSO 323 bp overlap
ChIP MM1-S_DMSO GSE36354.MYC.MM1-S_DMSO 148 bp overlap
MYOD1 1 dataset
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 136 bp overlap
NEUROD1 1 dataset
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 190 bp overlap
NFXL1 1 dataset
ChIP GM12878 ENCSR746XEG.NFXL1.GM12878 221 bp overlap
NKX2-5 1 dataset
ChIP hESC_ab3584 GSE89457.NKX2-5.hESC_ab3584 245 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 178 bp overlap
NOTCH1 1 dataset
ChIP HPBALL GSE39263.NOTCH1.HPBALL 266 bp overlap
OTX1 2 datasets
Motif DE_48h DE_48h-OTX1_MA0711.2 6 bp overlap
ChIP MCF-7 ENCFF645GYL 163 bp overlap
Olig2 1 dataset
Motif DE_48h DE_48h-Olig2_MA1997.2 6 bp overlap
PITX1 1 dataset
Motif DE_48h DE_48h-PITX1_MA0682.3 6 bp overlap
PITX3 1 dataset
Motif DE_48h DE_48h-PITX3_MA0714.2 6 bp overlap
POLR2A 3 datasets
ChIP MCF-7 ENCFF164XWP 154 bp overlap
ChIP MCF-7 ENCFF164XWP 356 bp overlap
ChIP neural cell ENCFF604SPB 302 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 137 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 495 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 296 bp overlap
Ptf1A 1 dataset
Motif DE_48h DE_48h-Ptf1A_MA1619.2 8 bp overlap
RB1 1 dataset
ChIP GM12878 ENCSR785OKZ.RB1.GM12878 59 bp overlap
REST 1 dataset
ChIP neural ENCSR000BTV.REST.neural 145 bp overlap
RHOXF1 1 dataset
Motif DE_48h DE_48h-RHOXF1_MA0719.2 6 bp overlap
RNF2 1 dataset
ChIP GM12878 ENCSR679FAB.RNF2.GM12878 178 bp overlap
RREB1 1 dataset
Motif DE_48h DE_48h-RREB1_MA0073.2 19 bp overlap
SIN3A 1 dataset
ChIP MCF-7 ENCFF437VFY 89 bp overlap
SIX2 2 datasets
ChIP HEK GSE73865.SIX2.HEK 198 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 218 bp overlap
SIX4 1 dataset
ChIP MCF-7 ENCFF919BLX 377 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 297 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 674 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 674 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 674 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 674 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 674 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 563 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 674 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 674 bp overlap
SMAD3 2 datasets
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 148 bp overlap
ChIP endoderm GSE29422.SMAD3.endoderm 204 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 285 bp overlap
SMARCC1 3 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 273 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 530 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 150 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 466 bp overlap
SP1 1 dataset
ChIP MCF-7 ENCFF202YLB 57 bp overlap
SPDEF 1 dataset
ChIP MCF-7 ENCFF827PZY 250 bp overlap
SPI1 1 dataset
ChIP DC_LPS GSE123347.SPI1.DC_LPS 66 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 270 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 226 bp overlap
TBX3 1 dataset
ChIP HepG2 ENCFF178RIL 254 bp overlap
TCF4 2 datasets
ChIP CAL-1 GSE76147.TCF4.CAL-1 220 bp overlap
ChIP GEN2-2 GSE76147.TCF4.GEN2-2 217 bp overlap
TCF7L2 2 datasets
ChIP HEK293 ENCFF513JQN 342 bp overlap
ChIP HEK293 ENCSR000EUY.TCF7L2.HEK293 261 bp overlap
TFAP4 1 dataset
Motif DE_48h DE_48h-TFAP4_MA0691.1 10 bp overlap
Tcf12 1 dataset
Motif DE_48h DE_48h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif DE_48h DE_48h-Twist2_MA0633.3 6 bp overlap
ZBTB11 1 dataset
ChIP K562 ENCFF694AXU 187 bp overlap
ZBTB33 2 datasets
ChIP GM12878 ENCSR542FLV.ZBTB33.GM12878 242 bp overlap
ChIP HepG2 ENCFF778UKV 235 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 229 bp overlap
ZNF227 1 dataset
ChIP MCF-7 ENCFF634YOG 331 bp overlap
ZNF317 1 dataset
Motif DE_48h DE_48h-ZNF317_MA1593.2 8 bp overlap
ZNF331 1 dataset
ChIP MCF-7 ENCFF969JZR 205 bp overlap
ZNF592 1 dataset
ChIP MCF-7 ENCFF315RIM 371 bp overlap
ZNF687 3 datasets
ChIP GM12878 ENCFF233SGE 457 bp overlap
ChIP GM12878 ENCSR859FDL.ZNF687.GM12878 557 bp overlap
ChIP MCF-7 ENCFF440BFX 324 bp overlap