chr20 : 6,044,157 – 6,044,390
233 bp 77 TFs 1 linked gene
This 233 bp open chromatin element is linked to LRRN4 and is bound by 77 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LRRN4 9.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr20:6,039,157 – 6,049,390
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
77 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP HeLa_EGF GSE40632.AFF4.HeLa_EGF 147 bp overlap
AGO2 1 dataset
ChIP HepG2 ENCFF773YDL 221 bp overlap
BRD3 1 dataset
ChIP K-562_DMSO-IFNG GSE138084.BRD3.K-562_DMSO-IFNG 62 bp overlap
BRD4 2 datasets
ChIP HepG2 ENCFF607HXA 233 bp overlap
ChIP HepG2 ENCFF607HXA 169 bp overlap
CBFA2T2 1 dataset
ChIP NCCIT GSE71675.CBFA2T2.NCCIT 233 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 163 bp overlap
CREM 1 dataset
ChIP K-562 ENCSR077DKV.CREM.K-562 126 bp overlap
CTCF 2 datasets
ChIP GSC23 GSE139416.CTCF.GSC23 233 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 114 bp overlap
DDX21 2 datasets
ChIP A-375 GSE128080.DDX21.A-375 215 bp overlap
ChIP A-375_1726plus GSE128080.DDX21.A-375_1726plus 233 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 157 bp overlap
ESR1 1 dataset
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 108 bp overlap
ETS1 1 dataset
ChIP hESC ENCSR534VHI.ETS1.hESC 130 bp overlap
FEZF2 1 dataset
Motif ES_0h ES_0h-FEZF2_MA2341.1 8 bp overlap
FIP1L1 1 dataset
ChIP Hep-G2 ENCSR313VZG.FIP1L1.Hep-G2 229 bp overlap
FOSL2 1 dataset
ChIP Hep-G2 ENCSR000BHP.FOSL2.Hep-G2 208 bp overlap
GTF3A 1 dataset
ChIP HepG2 ENCFF268DGX 233 bp overlap
HCFC1 3 datasets
ChIP GM12878 ENCSR514VAY.HCFC1.GM12878 173 bp overlap
ChIP K-562 ENCSR000EFN.HCFC1.K-562 217 bp overlap
ChIP K562 ENCFF959WVM 156 bp overlap
HES4 1 dataset
ChIP HepG2 ENCFF200ZII 233 bp overlap
HIVEP1 1 dataset
ChIP Hep-G2 ENCSR697WMX.HIVEP1.Hep-G2 181 bp overlap
HMG20B 1 dataset
ChIP HepG2 ENCFF756WYV 104 bp overlap
HNF1B 1 dataset
ChIP HepG2 ENCFF928THX 233 bp overlap
HNF4A 2 datasets
ChIP HepG2 ENCFF146SSF 233 bp overlap
ChIP gastric-epithelial-cell_OE GSE114018.HNF4A.gastric-epithelial-cell_OE 84 bp overlap
IFNA1 1 dataset
ChIP Huh-7_GFP GSE110511.IFNA1.Huh-7_GFP 233 bp overlap
KDM2A 2 datasets
ChIP HepG2 ENCFF491GTR 233 bp overlap
ChIP HepG2 ENCFF491GTR 150 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 137 bp overlap
KDM5B 1 dataset
ChIP Hep-G2 ENCSR227MRE.KDM5B.Hep-G2 175 bp overlap
KLF10 2 datasets
ChIP Hep-G2 GSE97661.KLF10.Hep-G2 233 bp overlap
ChIP MCF-7 GSE97661.KLF10.MCF-7 122 bp overlap
KLF9 2 datasets
ChIP GBM1A GSE62211.KLF9.GBM1A 139 bp overlap
ChIP HEK293 ENCSR076EZB.KLF9.HEK293 233 bp overlap
MED26 1 dataset
ChIP HEK293T GSE121024.MED26.HEK293T 198 bp overlap
MGA 1 dataset
Motif ES_0h ES_0h-MGA_MA0801.1 8 bp overlap
MGA::EVX1 1 dataset
Motif ES_0h ES_0h-MGAEVX1_MA1960.2 11 bp overlap
MITF 1 dataset
ChIP 501-mel GSE137522.MITF.501-mel 107 bp overlap
NCAPH2 1 dataset
ChIP IMR-90_FLAG_OIS GSE118494.NCAPH2.IMR-90_FLAG_OIS 233 bp overlap
NOTCH1 1 dataset
ChIP CUTLL1 GSE29600.NOTCH1.CUTLL1 101 bp overlap
PAF1 1 dataset
ChIP HCT-116_ab20662 GSE97527.PAF1.HCT-116_ab20662 166 bp overlap
POLR2A 1 dataset
ChIP HepG2 ENCFF252NAR 125 bp overlap
POLR2G 2 datasets
ChIP HepG2 ENCFF241AEG 233 bp overlap
ChIP HepG2 ENCFF508UTS 233 bp overlap
POU2F1 1 dataset
ChIP HepG2 ENCFF422JZU 233 bp overlap
Prdm15 1 dataset
Motif ES_0h ES_0h-Prdm15_MA1616.2 11 bp overlap
RBM22 2 datasets
ChIP HepG2 ENCFF292RVQ 233 bp overlap
ChIP HepG2 ENCFF561IAJ 233 bp overlap
RBPJ 1 dataset
ChIP MUTUL GSE75503.RBPJ.MUTUL 164 bp overlap
RELA 1 dataset
ChIP 786-O GSE86092.RELA.786-O 128 bp overlap
SIN3A 1 dataset
ChIP HUVEC-C GSE103245.SIN3A.HUVEC-C 162 bp overlap
SIX5 5 datasets
ChIP A-549 ENCSR000BRL.SIX5.A-549 134 bp overlap
ChIP GM12878 ENCFF766FEJ 188 bp overlap
ChIP GM12878 ENCSR000BJE.SIX5.GM12878 175 bp overlap
ChIP H1 ENCFF942SOJ 196 bp overlap
ChIP WA01 ENCSR000BIQ.SIX5.WA01 140 bp overlap
SP3 1 dataset
ChIP HEK293 ENCSR141PZA.SP3.HEK293 233 bp overlap
SP5 1 dataset
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
SPI1 1 dataset
ChIP K-562 ENCSR000BGW.SPI1.K-562 127 bp overlap
SUZ12 1 dataset
ChIP K-562 ENCSR412CTM.SUZ12.K-562 124 bp overlap
TARDBP 1 dataset
ChIP K-562 ENCSR353HEP.TARDBP.K-562 149 bp overlap
TBR1 1 dataset
Motif ES_0h ES_0h-TBR1_MA0802.2 9 bp overlap
TBX1 1 dataset
Motif ES_0h ES_0h-TBX1_MA0805.1 8 bp overlap
TBX15 1 dataset
Motif ES_0h ES_0h-TBX15_MA0803.1 8 bp overlap
TBX2 1 dataset
Motif ES_0h ES_0h-TBX2_MA0688.2 9 bp overlap
TBX4 1 dataset
Motif ES_0h ES_0h-TBX4_MA0806.1 8 bp overlap
TBX5 1 dataset
Motif ES_0h ES_0h-TBX5_MA0807.1 8 bp overlap
TCF12 1 dataset
ChIP Kasumi-1 GSE23730.TCF12.Kasumi-1 92 bp overlap
TCF3 1 dataset
ChIP HepG2 ENCFF066OAK 58 bp overlap
THAP11 1 dataset
ChIP HepG2 ENCFF272SWH 233 bp overlap
TRIM28 1 dataset
ChIP hESC GSE115387.TRIM28.hESC 233 bp overlap
U2AF1 2 datasets
ChIP Hep-G2 GSE120104.U2AF1.Hep-G2 111 bp overlap
ChIP Hep-G2 ENCSR868JLS.U2AF1.Hep-G2 91 bp overlap
USF1 3 datasets
ChIP H1 ENCFF090WVU 66 bp overlap
ChIP HepG2 ENCFF201JKA 139 bp overlap
ChIP K562 ENCFF202SFC 194 bp overlap
VDR 1 dataset
ChIP kidney-cortex GSE129585.VDR.kidney-cortex 174 bp overlap
XRCC5 1 dataset
ChIP K-562 GSE120104.XRCC5.K-562 104 bp overlap
YY1 14 datasets
ChIP A-549 ENCSR000BPM.YY1.A-549 110 bp overlap
ChIP GM12878 ENCFF908JTL 225 bp overlap
ChIP H1 ENCFF524BTL 233 bp overlap
ChIP HCT-116 ENCSR000BNX.YY1.HCT-116 141 bp overlap
ChIP Hep-G2 ENCSR000BNT.YY1.Hep-G2 94 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 189 bp overlap
ChIP Ishikawa ENCFF505XQX 233 bp overlap
ChIP Ishikawa ENCSR000BSY.YY1.Ishikawa 135 bp overlap
ChIP K-562 ENCSR000BMH.YY1.K-562 165 bp overlap
ChIP K-562 ENCSR000BKU.YY1.K-562 157 bp overlap
ChIP K562 ENCFF199FNC 224 bp overlap
ChIP K562 ENCFF660QRE 195 bp overlap
ChIP NT2-D1 ENCSR000EXG.YY1.NT2-D1 154 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 233 bp overlap
YY2 1 dataset
ChIP HEK293 ENCSR692HSE.YY2.HEK293 165 bp overlap
ZFX 1 dataset
ChIP HCT116 ENCFF324IZY 233 bp overlap
ZKSCAN3 1 dataset
Motif ES_0h ES_0h-ZKSCAN3_MA1973.2 14 bp overlap
ZNF140 1 dataset
Motif ES_0h ES_0h-ZNF140_MA1589.2 19 bp overlap
ZNF143 17 datasets
ChIP CUTLL1 GSE29600.ZNF143.CUTLL1 231 bp overlap
ChIP FLP143HA_T4 GSE39263.ZNF143.FLP143HA_T4 210 bp overlap
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 147 bp overlap
ChIP GM12878 ENCSR936XTK.ZNF143.GM12878 233 bp overlap
ChIP GM12878 ENCSR000DZL.ZNF143.GM12878 146 bp overlap
ChIP Hep-G2 ENCSR080UEM.ZNF143.Hep-G2 233 bp overlap
ChIP Hep-G2 ENCSR101FJT.ZNF143.Hep-G2 181 bp overlap
ChIP HepG2 ENCFF658YIR 233 bp overlap
ChIP K-562 GSE39263.ZNF143.K-562 225 bp overlap
ChIP K-562 ENCSR000EGP.ZNF143.K-562 198 bp overlap
ChIP K562 ENCFF554TVF 162 bp overlap
ChIP MCF-7 GSE76454.ZNF143.MCF-7 233 bp overlap
ChIP MCF-7_E2 GSE76454.ZNF143.MCF-7_E2 233 bp overlap
ChIP WA01 ENCSR000EBW.ZNF143.WA01 222 bp overlap
ChIP WA09 GSE105028.ZNF143.WA09 233 bp overlap
ChIP WA09_heat-shock GSE105028.ZNF143.WA09_heat-shock 233 bp overlap
ChIP WTC11 ENCFF249JUK 233 bp overlap
ZNF213 1 dataset
Motif ES_0h ES_0h-ZNF213_MA2121.1 12 bp overlap
ZNF214 1 dataset
Motif ES_0h ES_0h-ZNF214_MA1975.2 13 bp overlap
ZNF318 1 dataset
ChIP HepG2 ENCFF054INI 233 bp overlap
ZNF598 1 dataset
ChIP Hep-G2 ENCSR173NAL.ZNF598.Hep-G2 215 bp overlap
ZNF605 1 dataset
ChIP HepG2 ENCFF640NFJ 80 bp overlap
ZNF695 1 dataset
ChIP HEK293T GSE78099.ZNF695.HEK293T 110 bp overlap
ZNF891 1 dataset
ChIP Hep-G2 ENCSR020CLV.ZNF891.Hep-G2 233 bp overlap
Zfp809 1 dataset
Motif ES_0h ES_0h-Zfp809_MA2125.1 9 bp overlap
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