chr2 : 8,315,893 8,316,115
222 bp 47 TFs 1 linked gene
This 222 bp open chromatin element is linked to LINC00299 and is bound by 47 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LINC00299 8.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:8,310,893 – 8,321,115
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
47 transcription factors
Source
Cell type
AR 5 datasets
ChIP LNCaP ERP003503.AR.LNCaP 76 bp overlap
ChIP breast_tumor_Male_26 GSE104399.AR.breast_tumor_Male_26 222 bp overlap
ChIP prostate-cancer_PDX_92 GSE130408.AR.prostate-cancer_PDX_92 66 bp overlap
ChIP prostate_2752_T GSE130408.AR.prostate_2752_T 69 bp overlap
ChIP prostate_2815_T GSE130408.AR.prostate_2815_T 84 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 122 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_SKNFI GSE100148.ATRX.metastatic-neuroblastoma_SKNFI 193 bp overlap
BRD2 1 dataset
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 104 bp overlap
BRD4 6 datasets
ChIP MOLM-14_DMSO GSE65138.BRD4.MOLM-14_DMSO 110 bp overlap
ChIP MV4-11-B_BI00894999_100nM_4h GSE101821.BRD4.MV4-11-B_BI00894999_100nM_4h 222 bp overlap
ChIP MV4-11-B_BI00894999_35nM_4h GSE101821.BRD4.MV4-11-B_BI00894999_35nM_4h 222 bp overlap
ChIP MV4-11-B_DMSO GSE101821.BRD4.MV4-11-B_DMSO 200 bp overlap
ChIP SUM159PT_KO GSE131097.BRD4.SUM159PT_KO 119 bp overlap
ChIP SUM159PT_scramble GSE131097.BRD4.SUM159PT_scramble 154 bp overlap
CDX2 1 dataset
ChIP LS180_125 GSE31939.CDX2.LS180_125 128 bp overlap
CEBPB 1 dataset
ChIP MV4-11 GSE88746.CEBPB.MV4-11 205 bp overlap
CTCF 1 dataset
ChIP SUM159 GSE46055.CTCF.SUM159 145 bp overlap
ESR1 5 datasets
ChIP breast_tumor_BADOUTCOME GSE40867.ESR1.breast_tumor_BADOUTCOME 109 bp overlap
ChIP breast_tumor_Male_10 GSE104399.ESR1.breast_tumor_Male_10 76 bp overlap
ChIP breast_tumor_Male_11 GSE104399.ESR1.breast_tumor_Male_11 53 bp overlap
ChIP breast_tumor_Male_20 GSE104399.ESR1.breast_tumor_Male_20 162 bp overlap
ChIP breast_tumor_Male_26 GSE104399.ESR1.breast_tumor_Male_26 155 bp overlap
FOS 1 dataset
ChIP MCF-10A ENCSR000DON.FOS.MCF-10A 120 bp overlap
FOXA1 6 datasets
ChIP LNCaP_G87R_shFOXA1 GSE128883.FOXA1.LNCaP_G87R_shFOXA1 89 bp overlap
ChIP breast_tumor_Female_2 GSE104399.FOXA1.breast_tumor_Female_2 82 bp overlap
ChIP breast_tumor_Male_3 GSE104399.FOXA1.breast_tumor_Male_3 222 bp overlap
ChIP breast_tumor_Male_4 GSE104399.FOXA1.breast_tumor_Male_4 64 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.FOXA1.primary-breast-cancer_B2_DSG 87 bp overlap
ChIP prostate_P23_T GSE130408.FOXA1.prostate_P23_T 91 bp overlap
GATA3 1 dataset
ChIP breast_tumor_Male_21 GSE104399.GATA3.breast_tumor_Male_21 128 bp overlap
HAND2 1 dataset
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 222 bp overlap
HNF4A 1 dataset
ChIP IM95 GSE114018.HNF4A.IM95 177 bp overlap
HOXB13 2 datasets
ChIP prostate-cancer_PDX_170-2 GSE130408.HOXB13.prostate-cancer_PDX_170-2 57 bp overlap
ChIP prostate_P1_T GSE130408.HOXB13.prostate_P1_T 70 bp overlap
JUN 3 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 215 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 215 bp overlap
ChIP MCF-7_DMSO GSE157385.JUN.MCF-7_DMSO 222 bp overlap
KLF5 1 dataset
ChIP KATO-III GSE51705.KLF5.KATO-III 143 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 159 bp overlap
KMT2A 1 dataset
ChIP blood_cord GSE83671.KMT2A.blood_cord 222 bp overlap
MAX 1 dataset
ChIP K-562 ENCSR000EFV.MAX.K-562 122 bp overlap
MYC 1 dataset
ChIP P493-6 GSE77061.MYC.P493-6 164 bp overlap
MYCN 1 dataset
ChIP Kelly GSE94822.MYCN.Kelly 130 bp overlap
NCOA2 1 dataset
ChIP MCF-7 ERP000901.NCOA2.MCF-7 172 bp overlap
NCOR1 1 dataset
ChIP LS180 GSE39277.NCOR1.LS180 93 bp overlap
NFKB1 1 dataset
ChIP MCF10A-Er-Src_TAM GSE115597.NFKB1.MCF10A-Er-Src_TAM 87 bp overlap
NR3C1 2 datasets
ChIP breast_tumor_Male_15 GSE104399.NR3C1.breast_tumor_Male_15 69 bp overlap
ChIP breast_tumor_Male_21 GSE104399.NR3C1.breast_tumor_Male_21 222 bp overlap
PGR 2 datasets
ChIP breast_tumor_Male_26 GSE104399.PGR.breast_tumor_Male_26 222 bp overlap
ChIP breast_tumor_Male_30 GSE104399.PGR.breast_tumor_Male_30 116 bp overlap
PHIP 1 dataset
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 222 bp overlap
POLR2A 1 dataset
ChIP spleen ENCFF446ZGT 142 bp overlap
RBPJ 1 dataset
ChIP NHEK GSE29498.RBPJ.NHEK 199 bp overlap
REST 1 dataset
ChIP K-562 ENCSR137ZMQ.REST.K-562 104 bp overlap
SND1 1 dataset
ChIP NHEK GSE29498.SND1.NHEK 167 bp overlap
SOX2 1 dataset
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 107 bp overlap
SREBP2 2 datasets
ChIP monocyte GSE129202.SREBP2.monocyte 167 bp overlap
ChIP monocyte_TNF GSE129202.SREBP2.monocyte_TNF 207 bp overlap
STAG1 1 dataset
ChIP MCF-7_E2_SHCTCF ERP000209.STAG1.MCF-7_E2_SHCTCF 157 bp overlap
STAT1 1 dataset
ChIP CD14_INFG_LPS GSE43036.STAT1.CD14_INFG_LPS 144 bp overlap
STAT3 1 dataset
ChIP MCF-10A ENCSR000DOQ.STAT3.MCF-10A 85 bp overlap
TCF7L2 4 datasets
ChIP HCT-116_C16 GSE127960.TCF7L2.HCT-116_C16 213 bp overlap
ChIP HCT-116_C18 GSE127960.TCF7L2.HCT-116_C18 145 bp overlap
ChIP HCT-116_sc2 GSE127960.TCF7L2.HCT-116_sc2 191 bp overlap
ChIP LNCaP GSE51621.TCF7L2.LNCaP 212 bp overlap
TEAD4 2 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 59 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 59 bp overlap
TP63 1 dataset
ChIP breast-organoid GSE113909.TP63.breast-organoid 126 bp overlap
TRIM28 1 dataset
ChIP HEK293 ENCFF582MWI 222 bp overlap
UBTF 1 dataset
ChIP K-562 ENCSR000EFZ.UBTF.K-562 166 bp overlap
ZBTB7A 1 dataset
ChIP K-562 GSE103445.ZBTB7A.K-562 197 bp overlap
ZNF12 1 dataset
ChIP K-562 ENCSR041YBR.ZNF12.K-562 197 bp overlap