chr2 : 5,694,392 – 5,694,761
369 bp 59 TFs 4 linked genes
This 369 bp open chromatin element is linked to 4 target genes and is bound by 59 transcription factors.
Linked Genes
4 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000242540 1.5 kb Proximal Proximity
SOX11 2.0 kb Proximal Proximity
LINC01248 2.9 kb Proximal Proximity
ENSG00000230090 3.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:5,689,392 – 5,699,761
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
59 transcription factors
Source
Cell type
ATRX 1 dataset
ChIP metastatic-neuroblastoma_SKNMM GSE100148.ATRX.metastatic-neuroblastoma_SKNMM 246 bp overlap
BCOR 1 dataset
ChIP WA01 GSE104690.BCOR.WA01 257 bp overlap
BNC2 1 dataset
ChIP SK-N-SH ENCFF174EMC 182 bp overlap
BRD2 2 datasets
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 186 bp overlap
ChIP SK-MEL-147_JQ1 GSE94488.BRD2.SK-MEL-147_JQ1 192 bp overlap
BRD4 6 datasets
ChIP DND41_E GSE54379.BRD4.DND41_E 359 bp overlap
ChIP Jurkat GSE83777.BRD4.Jurkat 369 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 151 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 245 bp overlap
ChIP MM1-S GSE43743.BRD4.MM1-S 266 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_KCl-pos_JQ1-neg 287 bp overlap
CDK7 3 datasets
ChIP Jurkat GSE83777.CDK7.Jurkat 256 bp overlap
ChIP Jurkat GSE50622.CDK7.Jurkat 291 bp overlap
ChIP Jurkat_DMSO GSE60027.CDK7.Jurkat_DMSO 176 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 182 bp overlap
CREB5 2 datasets
ChIP SK-N-SH ENCFF144PMI 168 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR758GOA.CREB5.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 50 bp overlap
CTCF 6 datasets
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 198 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-neg 169 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-pos 132 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-neg 144 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 171 bp overlap
ChIP neural crest cell ENCFF182LWK 158 bp overlap
ELF1 1 dataset
ChIP SK-N-MC_SHFLI_96H GSE61944.ELF1.SK-N-MC_SHFLI_96H 237 bp overlap
ELK1::HOXA1 3 datasets
Motif DE_12h DE_12h-ELK1HOXA1_MA1931.1 14 bp overlap
Motif DE_60h DE_60h-ELK1HOXA1_MA1931.1 14 bp overlap
Motif ES_0h ES_0h-ELK1HOXA1_MA1931.1 14 bp overlap
EP300 1 dataset
ChIP neural cell ENCFF442QNK 169 bp overlap
ETV1 2 datasets
ChIP GIST-T1 GSE106624.ETV1.GIST-T1 195 bp overlap
ChIP GIST-T1 GSE80443.ETV1.GIST-T1 121 bp overlap
EZH2 3 datasets
ChIP endothelial cell of umbilical vein ENCFF539AKL 163 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 214 bp overlap
ChIP fibroblast_DERMAL ENCSR000ASE.EZH2.fibroblast_DERMAL 179 bp overlap
EZH2_phosphoT487 1 dataset
ChIP GM23248 ENCSR096KPA.EZH2_phosphoT487.GM23248 369 bp overlap
FLI1 1 dataset
ChIP SEM GSE117864.FLI1.SEM 187 bp overlap
GABPA 1 dataset
ChIP SK-N-SH ENCSR000BTG.GABPA.SK-N-SH 121 bp overlap
GATA3 1 dataset
ChIP Jurkat GSE76181.GATA3.Jurkat 275 bp overlap
HDAC2 1 dataset
ChIP pre-B-cell GSE107886.HDAC2.pre-B-cell 369 bp overlap
Hand1::Tcf3 1 dataset
Motif DE_12h DE_12h-Hand1Tcf3_MA0092.2 9 bp overlap
Hnf1A 1 dataset
Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap
IKZF1 1 dataset
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 369 bp overlap
IKZF3 1 dataset
ChIP pre-B-cell GSE107886.IKZF3.pre-B-cell 294 bp overlap
KDM5B 1 dataset
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 146 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 212 bp overlap
KMT2A 1 dataset
ChIP SEM GSE83671.KMT2A.SEM 202 bp overlap
LMO1 1 dataset
ChIP Jurkat GSE94391.LMO1.Jurkat 272 bp overlap
MED1 1 dataset
ChIP Jurkat GSE59657.MED1.Jurkat 369 bp overlap
MEF2B 1 dataset
ChIP DLBCL GSE110682.MEF2B.DLBCL 210 bp overlap
MTA2 1 dataset
ChIP pre-B-cell GSE107886.MTA2.pre-B-cell 282 bp overlap
MTF1 1 dataset
Motif DE_12h DE_12h-MTF1_MA0863.1 14 bp overlap
MYB 2 datasets
ChIP Jurkat GSE59657.MYB.Jurkat 366 bp overlap
ChIP MOLT-3 GSE59657.MYB.MOLT-3 270 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 231 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 162 bp overlap
NKX2-1 1 dataset
ChIP H9_derived-cIN GSE99937.NKX2-1.H9_derived-cIN 116 bp overlap
Nr2e3 1 dataset
Motif DE_12h DE_12h-Nr2e3_MA0164.2 6 bp overlap
PBX3 1 dataset
ChIP SK-N-SH ENCFF876BMC 296 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 199 bp overlap
PROX1 1 dataset
Motif DE_12h DE_12h-PROX1_MA0794.1 12 bp overlap
RAD21 1 dataset
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 139 bp overlap
RBBP4 2 datasets
ChIP RH5 GSE155861.RBBP4.RH5 114 bp overlap
ChIP SCMC GSE155861.RBBP4.SCMC 233 bp overlap
RUNX1 2 datasets
ChIP Jurkat GSE68976.RUNX1.Jurkat 187 bp overlap
ChIP Jurkat GSE76181.RUNX1.Jurkat 120 bp overlap
SAP30 2 datasets
ChIP H1 ENCFF149IOE 81 bp overlap
ChIP WA01 ENCSR000ATR.SAP30.WA01 369 bp overlap
SIN3A 3 datasets
ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 180 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 258 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 221 bp overlap
SMAD2 1 dataset
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 160 bp overlap
SMAD2_3 1 dataset
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 144 bp overlap
SMARCA4 5 datasets
ChIP Aska-SS GSE108025.SMARCA4.Aska-SS 255 bp overlap
ChIP Aska-SS_shSSX GSE108025.SMARCA4.Aska-SS_shSSX 264 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 209 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 224 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 209 bp overlap
SMARCB1 1 dataset
ChIP hiPSC GSE124903.SMARCB1.hiPSC 234 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 187 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 217 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 369 bp overlap
SS18 2 datasets
ChIP Aska-SS GSE108025.SS18.Aska-SS 369 bp overlap
ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 300 bp overlap
SUZ12 3 datasets
ChIP Aska-SS GSE108025.SUZ12.Aska-SS 369 bp overlap
ChIP GM12878 ENCSR091BOQ.SUZ12.GM12878 63 bp overlap
ChIP HEK293T_PCGF1356fl GSE119618.SUZ12.HEK293T_PCGF1356fl 283 bp overlap
TAF1 2 datasets
ChIP SK-N-SH ENCSR000BQF.TAF1.SK-N-SH 191 bp overlap
ChIP neural ENCSR000BTX.TAF1.neural 177 bp overlap
TAL1 1 dataset
ChIP MOLT-3 GSE59657.TAL1.MOLT-3 257 bp overlap
TCF7L1 1 dataset
Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap
TCF7L2 2 datasets
Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap
ChIP HEK293 ENCSR000EUY.TCF7L2.HEK293 260 bp overlap
YY1 1 dataset
ChIP ALL GSE145549.YY1.ALL 52 bp overlap
ZBED4 3 datasets
Motif DE_12h DE_12h-ZBED4_MA2328.1 10 bp overlap
Motif DE_60h DE_60h-ZBED4_MA2328.1 10 bp overlap
Motif ES_0h ES_0h-ZBED4_MA2328.1 10 bp overlap
ZBTB7A 3 datasets
Motif DE_12h DE_12h-ZBTB7A_MA0750.3 9 bp overlap
Motif DE_60h DE_60h-ZBTB7A_MA0750.3 9 bp overlap
Motif ES_0h ES_0h-ZBTB7A_MA0750.3 9 bp overlap
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