Transcription factors with Perturb-seq knockdown data for ENSG00000230090. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = ENSG00000230090 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of ENSG00000230090, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr2:5,689,878–5,690,032 | 1.1 kb | Proximal (<10kb) | 9 | |
| chr2:5,690,147–5,694,201 | at TSS | At TSS | 439 | |
| chr2:5,694,392–5,694,761 | 3.3 kb | Proximal (<10kb) | 59 | |
| chr2:5,695,625–5,697,853 | 4.5 kb | Proximal (<10kb) | 436 |
Genomic view of the ENSG00000230090 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.