chr16 : 65,125,791 – 65,126,156
365 bp 55 TFs 1 linked gene
This 365 bp open chromatin element is linked to CDH11 and is bound by 55 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
CDH11 3.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr16:65,120,791 – 65,131,156
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
55 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP 12Z GSE129781.ARID1A.12Z 152 bp overlap
ATF4 2 datasets
ChIP Jurkat_ZBTB1-KO_Asp-deprivation GSE145783.ATF4.Jurkat_ZBTB1-KO_Asp-deprivation 194 bp overlap
ChIP Jurkat_ZBTB1-KO_Asp-deprivation_cDNA GSE145783.ATF4.Jurkat_ZBTB1-KO_Asp-deprivation_cDNA 144 bp overlap
BCL11B 1 dataset
ChIP thymus_CD34neg GSE84677.BCL11B.thymus_CD34neg 103 bp overlap
BHLHE40 1 dataset
ChIP IMR-90 ENCSR957KYB.BHLHE40.IMR-90 230 bp overlap
BRD4 6 datasets
ChIP CHL-1 GSE95585.BRD4.CHL-1 234 bp overlap
ChIP HCC1395 GSE63581.BRD4.HCC1395 336 bp overlap
ChIP SUM159PT_KO GSE131097.BRD4.SUM159PT_KO 365 bp overlap
ChIP SUM159PT_scramble GSE131097.BRD4.SUM159PT_scramble 365 bp overlap
ChIP SW480 GSE110473.BRD4.SW480 297 bp overlap
ChIP SW480_16h_TNF-a GSE110473.BRD4.SW480_16h_TNF-a 197 bp overlap
CDK8 1 dataset
ChIP leiomyoma_PT886 GSE128230.CDK8.leiomyoma_PT886 160 bp overlap
CDX2 3 datasets
ChIP LS180 GSE31939.CDX2.LS180 329 bp overlap
ChIP LS180_125 GSE31939.CDX2.LS180_125 140 bp overlap
ChIP LS180_125 GSE31939.CDX2.LS180_125 92 bp overlap
CEBPA 2 datasets
ChIP Kasumi-1_CEBPA-ER_E2 GSE102697.CEBPA.Kasumi-1_CEBPA-ER_E2 92 bp overlap
ChIP THP-1_EtOH_8h GSE124032.CEBPA.THP-1_EtOH_8h 95 bp overlap
CEBPB 7 datasets
ChIP A-549 ENCSR000BUB.CEBPB.A-549 155 bp overlap
ChIP A549 ENCFF235AIY 143 bp overlap
ChIP H1 ENCFF871PTR 148 bp overlap
ChIP HFOB_DIFF GSE82295.CEBPB.HFOB_DIFF 318 bp overlap
ChIP IMR-90 ENCFF468UGY 77 bp overlap
ChIP WA01 ENCSR000EBV.CEBPB.WA01 119 bp overlap
ChIP hMSC GSE68864.CEBPB.hMSC 113 bp overlap
CEBPD 1 dataset
ChIP HAEC_IL1b_4h GSE89970.CEBPD.HAEC_IL1b_4h 116 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 324 bp overlap
Cebpa 4 datasets
ChIP BLaER1 ENCFF093OYK 203 bp overlap
ChIP BLaER1 ENCFF262VBH 283 bp overlap
ChIP BLaER1 ENCFF335XTP 235 bp overlap
ChIP BLaER1 ENCFF364PUR 205 bp overlap
ETS1 2 datasets
ChIP CTV-1_DSG GSE128835.ETS1.CTV-1_DSG 365 bp overlap
ChIP CTV-1_DSG_SPI1-mut GSE128835.ETS1.CTV-1_DSG_SPI1-mut 232 bp overlap
ETV1 3 datasets
ChIP GIST GSE22441.ETV1.GIST 365 bp overlap
ChIP GIST-T1 GSE106624.ETV1.GIST-T1 365 bp overlap
ChIP GIST48_siSCR GSE106624.ETV1.GIST48_siSCR 267 bp overlap
FLI1 5 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 220 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 243 bp overlap
ChIP CTV-1_DSG GSE128835.FLI1.CTV-1_DSG 321 bp overlap
ChIP CTV-1_DSG_SPI1-mut GSE128835.FLI1.CTV-1_DSG_SPI1-mut 251 bp overlap
ChIP SEM GSE117864.FLI1.SEM 124 bp overlap
FOS 1 dataset
ChIP IMR-90 ENCSR124AIG.FOS.IMR-90 191 bp overlap
FOSL2 1 dataset
ChIP hESC GSE69539.FOSL2.hESC 204 bp overlap
FOXF1 4 datasets
ChIP GIST-T1 GSE106624.FOXF1.GIST-T1 70 bp overlap
ChIP GIST-T1 GSE106624.FOXF1.GIST-T1 223 bp overlap
ChIP GIST48 GSE106624.FOXF1.GIST48 58 bp overlap
ChIP GIST48 GSE106624.FOXF1.GIST48 220 bp overlap
FOXL2 5 datasets
ChIP HGrC1_C134W-TGF GSE138496.FOXL2.HGrC1_C134W-TGF 365 bp overlap
ChIP HGrC1_C134W-TGF_parental GSE138496.FOXL2.HGrC1_C134W-TGF_parental 365 bp overlap
ChIP KGN_1512 GSE138496.FOXL2.KGN_1512 228 bp overlap
ChIP KGN_1513 GSE138496.FOXL2.KGN_1513 365 bp overlap
ChIP SVOG-3e_DOX-WT GSE126171.FOXL2.SVOG-3e_DOX-WT 322 bp overlap
GATA2 3 datasets
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 277 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P1 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P1 198 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P2 264 bp overlap
GATA6 7 datasets
ChIP AGS GSE51705.GATA6.AGS 190 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 365 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 365 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 365 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 365 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 365 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 365 bp overlap
HNF4A 4 datasets
ChIP GP5D GSE51234.HNF4A.GP5D 303 bp overlap
ChIP IM95 GSE114018.HNF4A.IM95 158 bp overlap
ChIP IM95 GSE114018.HNF4A.IM95 132 bp overlap
ChIP KATO-III GSE114018.HNF4A.KATO-III 365 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 235 bp overlap
JUN 5 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 365 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 365 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 365 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 356 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 365 bp overlap
KLF5 1 dataset
ChIP GP5D GSE51234.KLF5.GP5D 310 bp overlap
MAX 1 dataset
ChIP MDA-MB-231 GSE127192.MAX.MDA-MB-231 321 bp overlap
MED12 1 dataset
ChIP leiomyoma_PT886 GSE128230.MED12.leiomyoma_PT886 154 bp overlap
MEN1 1 dataset
ChIP PC-3 GSE132827.MEN1.PC-3 53 bp overlap
MGA 1 dataset
ChIP A-549_MGA-OE GSE112188.MGA.A-549_MGA-OE 320 bp overlap
MYB 2 datasets
ChIP DU528 GSE94000.MYB.DU528 245 bp overlap
ChIP THP-1 GSE90769.MYB.THP-1 164 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 353 bp overlap
MYC 3 datasets
ChIP GP5D GSE51234.MYC.GP5D 365 bp overlap
ChIP GP5D_SIRAD21 GSE51234.MYC.GP5D_SIRAD21 340 bp overlap
ChIP LS174T_BI8622 GSE59223.MYC.LS174T_BI8622 110 bp overlap
NANOG 1 dataset
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 227 bp overlap
NIPBL 3 datasets
ChIP GP5D GSE51234.NIPBL.GP5D 365 bp overlap
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 234 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 308 bp overlap
POLR2A 6 datasets
ChIP SK-N-MC ENCFF088IVG 218 bp overlap
ChIP breast epithelium ENCFF065JSZ 225 bp overlap
ChIP esophagus muscularis mucosa ENCFF432ZCY 333 bp overlap
ChIP esophagus muscularis mucosa ENCFF791ZXN 363 bp overlap
ChIP sigmoid colon ENCFF725QFT 365 bp overlap
ChIP sigmoid colon ENCFF748YVT 365 bp overlap
PROX1 1 dataset
ChIP SW480 GSE60390.PROX1.SW480 143 bp overlap
RAD21 1 dataset
ChIP LoVo_PHASEM GSE51290.RAD21.LoVo_PHASEM 220 bp overlap
RELA 3 datasets
ChIP aortic-endothelial-cell_IL1B_D2 GSE139377.RELA.aortic-endothelial-cell_IL1B_D2 125 bp overlap
ChIP aortic-endothelial-cell_IL1B_D38 GSE139377.RELA.aortic-endothelial-cell_IL1B_D38 204 bp overlap
ChIP aortic-endothelial-cell_IL1B_D9 GSE139377.RELA.aortic-endothelial-cell_IL1B_D9 198 bp overlap
SATB1 1 dataset
ChIP SH-SY5Y_ABETA GSE73576.SATB1.SH-SY5Y_ABETA 123 bp overlap
SMAD2-3 4 datasets
ChIP HGrC1_C134W-TGF GSE138496.SMAD2-3.HGrC1_C134W-TGF 230 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 365 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 365 bp overlap
ChIP KGN_TGF GSE138496.SMAD2-3.KGN_TGF 157 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 365 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 365 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 365 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 345 bp overlap
SMAD3 1 dataset
ChIP LX2_CALCIPOTRIOL_TGFB1 GSE38103.SMAD3.LX2_CALCIPOTRIOL_TGFB1 295 bp overlap
SMAD4 2 datasets
ChIP HGrC1_C134W-TGF GSE138496.SMAD4.HGrC1_C134W-TGF 273 bp overlap
ChIP KGN_TGF GSE138496.SMAD4.KGN_TGF 147 bp overlap
SMARCA4 2 datasets
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 112 bp overlap
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 204 bp overlap
SMARCC1 2 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 304 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 365 bp overlap
SMC1 1 dataset
ChIP IMR-90_G GSE118494.SMC1.IMR-90_G 98 bp overlap
SPI1 2 datasets
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 365 bp overlap
ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 305 bp overlap
SS18 1 dataset
ChIP Aska-SS_BAF47KO1 GSE108025.SS18.Aska-SS_BAF47KO1 365 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 336 bp overlap
TAL1 1 dataset
ChIP RPMI8402 GSE39179.TAL1.RPMI8402 252 bp overlap
TCF12 2 datasets
ChIP RPMI8402 GSE39179.TCF12.RPMI8402 231 bp overlap
ChIP SK-N-SH ENCFF147AHB 325 bp overlap
TCF4 1 dataset
ChIP LS180_125 GSE31939.TCF4.LS180_125 155 bp overlap
TCF7L2 1 dataset
ChIP HCT-116 ENCSR000EUV.TCF7L2.HCT-116 304 bp overlap
TP53 1 dataset
ChIP GM00011 GSE55727.TP53.GM00011 223 bp overlap
ZNF263 1 dataset
ChIP HEK293 GSE76494.ZNF263.HEK293 86 bp overlap
Huangfu Lab · Publications · Resources · Contact