chr16 : 65,119,969 65,120,369
400 bp 49 TFs 1 linked gene
This 400 bp open chromatin element is linked to CDH11 and is bound by 49 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
CDH11 2.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr16:65,114,969 – 65,125,369
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
49 transcription factors
Source
Cell type
AR 1 dataset
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 249 bp overlap
ARID2 1 dataset
ChIP Aska-SS GSE108025.ARID2.Aska-SS 272 bp overlap
ASH2L 1 dataset
ChIP GM12878 ENCSR849WCQ.ASH2L.GM12878 140 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 204 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_CHLA90 GSE100148.ATRX.metastatic-neuroblastoma_CHLA90 288 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 193 bp overlap
BRD4 5 datasets
ChIP CHL-1_OTX015 GSE95585.BRD4.CHL-1_OTX015 209 bp overlap
ChIP HEK293T GSE39579.BRD4.HEK293T 158 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 169 bp overlap
ChIP MPNST_PDJQ GSE62499.BRD4.MPNST_PDJQ 193 bp overlap
ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 92 bp overlap
CBX8 1 dataset
ChIP A-549 ENCSR616MOB.CBX8.A-549 160 bp overlap
CDK8 2 datasets
ChIP leiomyoma_PT886 GSE128230.CDK8.leiomyoma_PT886 137 bp overlap
ChIP leiomyoma_PT886 GSE128230.CDK8.leiomyoma_PT886 80 bp overlap
CDK9 2 datasets
ChIP Kelly_CYC065 GSE107126.CDK9.Kelly_CYC065 254 bp overlap
ChIP Kelly_DMSO GSE107126.CDK9.Kelly_DMSO 224 bp overlap
CHD1 2 datasets
ChIP IMR-90 ENCSR000EFC.CHD1.IMR-90 183 bp overlap
ChIP WA01 ENCSR000AQK.CHD1.WA01 235 bp overlap
CTCF 11 datasets
ChIP chondrocyte ENCFF134ORZ 400 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF230SFD 350 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF245PVD 400 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF631JNO 400 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF767LNC 312 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF841TWE 198 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF841TWE 400 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF974AQC 351 bp overlap
ChIP lower leg skin ENCFF414KCF 328 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 262 bp overlap
ChIP skin_lower-leg ENCSR582MTM.CTCF.skin_lower-leg 237 bp overlap
CTCFL 1 dataset
ChIP FT282 GSE131931.CTCFL.FT282 400 bp overlap
EP300 2 datasets
ChIP fibroblast_proliferating GSE106146.EP300.fibroblast_proliferating 52 bp overlap
ChIP tibial nerve ENCFF346AYA 397 bp overlap
EZH2 2 datasets
ChIP LNCaP GSE39459.EZH2.LNCaP 173 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 308 bp overlap
GATA2 1 dataset
ChIP ESF GSE108408.GATA2.ESF 179 bp overlap
HNF4A 1 dataset
ChIP IM95 GSE114018.HNF4A.IM95 132 bp overlap
ISL1 1 dataset
ChIP SK-N-SH ENCFF285GEQ 63 bp overlap
JARID2 3 datasets
ChIP EDOMIPS2 GSE48516.JARID2.EDOMIPS2 111 bp overlap
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 264 bp overlap
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 215 bp overlap
MAZ 1 dataset
ChIP IMR-90 ENCSR000EFF.MAZ.IMR-90 111 bp overlap
MED1 11 datasets
ChIP hMSC-TERT4_4h GSE104537.MED1.hMSC-TERT4_4h 311 bp overlap
ChIP hMSC-TERT4_D3 GSE104537.MED1.hMSC-TERT4_D3 377 bp overlap
ChIP hMSC-TERT4_D7 GSE104537.MED1.hMSC-TERT4_D7 389 bp overlap
ChIP hMSC-TERT4_adipocyte-4H GSE113253.MED1.hMSC-TERT4_adipocyte-4H 400 bp overlap
ChIP hMSC-TERT4_adipocyte-D1 GSE113253.MED1.hMSC-TERT4_adipocyte-D1 400 bp overlap
ChIP hMSC-TERT4_adipocyte-D3 GSE113253.MED1.hMSC-TERT4_adipocyte-D3 400 bp overlap
ChIP hMSC-TERT4_adipocyte-D7 GSE113253.MED1.hMSC-TERT4_adipocyte-D7 394 bp overlap
ChIP hMSC-TERT4_osteoblast-4H GSE113253.MED1.hMSC-TERT4_osteoblast-4H 145 bp overlap
ChIP hMSC-TERT4_osteoblast-D3 GSE113253.MED1.hMSC-TERT4_osteoblast-D3 245 bp overlap
ChIP hMSC-TERT4_osteoblast-D7 GSE113253.MED1.hMSC-TERT4_osteoblast-D7 357 bp overlap
ChIP hMSC-TERT4_undifferentiated GSE113253.MED1.hMSC-TERT4_undifferentiated 158 bp overlap
MED12 1 dataset
ChIP leiomyoma_PT886 GSE128230.MED12.leiomyoma_PT886 108 bp overlap
MXI1 3 datasets
ChIP IMR-90 ENCFF040YVH 242 bp overlap
ChIP IMR-90 ENCSR000EFE.MXI1.IMR-90 252 bp overlap
ChIP neural ENCSR934NHU.MXI1.neural 322 bp overlap
MYC 2 datasets
ChIP BJ_INDUCED GSE36570.MYC.BJ_INDUCED 140 bp overlap
ChIP NB69 GSE138295.MYC.NB69 120 bp overlap
MYCN 1 dataset
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 353 bp overlap
MYF5 1 dataset
ChIP Rh18 GSE84628.MYF5.Rh18 203 bp overlap
NEUROD1 4 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 400 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 400 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 400 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 213 bp overlap
NEUROG2 2 datasets
ChIP MRC-5_NFD_02DPT GSE75910.NEUROG2.MRC-5_NFD_02DPT 201 bp overlap
ChIP MRC-5_NFD_1DPT GSE75910.NEUROG2.MRC-5_NFD_1DPT 148 bp overlap
POLR2A 17 datasets
ChIP breast epithelium ENCFF960NNA 318 bp overlap
ChIP esophagus muscularis mucosa ENCFF759BBR 164 bp overlap
ChIP esophagus muscularis mucosa ENCFF791ZXN 351 bp overlap
ChIP gastroesophageal sphincter ENCFF070PCA 297 bp overlap
ChIP gastroesophageal sphincter ENCFF238INU 372 bp overlap
ChIP gastroesophageal sphincter ENCFF461UHJ 332 bp overlap
ChIP gastroesophageal sphincter ENCFF826EZZ 343 bp overlap
ChIP lower leg skin ENCFF058ULB 355 bp overlap
ChIP lower leg skin ENCFF687RJC 355 bp overlap
ChIP sigmoid colon ENCFF754JQR 313 bp overlap
ChIP spleen ENCFF044PYR 193 bp overlap
ChIP spleen ENCFF955VIQ 291 bp overlap
ChIP stomach ENCFF278MYS 241 bp overlap
ChIP suprapubic skin ENCFF832BBO 358 bp overlap
ChIP tibial nerve ENCFF983HAU 365 bp overlap
ChIP transverse colon ENCFF840PXT 321 bp overlap
ChIP uterus ENCFF208ADI 364 bp overlap
POU5F1 2 datasets
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 145 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 400 bp overlap
PRDM15 1 dataset
ChIP WTC11 ENCFF108TMF 320 bp overlap
RAD21 3 datasets
ChIP IMR-90 ENCFF752PTH 151 bp overlap
ChIP IMR-90 ENCSR000EFJ.RAD21.IMR-90 375 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 222 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 135 bp overlap
RELA 2 datasets
ChIP aortic-endothelial-cell_IL1B_D38 GSE139377.RELA.aortic-endothelial-cell_IL1B_D38 170 bp overlap
ChIP aortic-endothelial-cell_IL1B_D47 GSE139377.RELA.aortic-endothelial-cell_IL1B_D47 199 bp overlap
REST 1 dataset
ChIP neural ENCSR000BTV.REST.neural 138 bp overlap
RNF2 1 dataset
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 400 bp overlap
SMAD3 1 dataset
ChIP NCI-H441 GSE51509.SMAD3.NCI-H441 222 bp overlap
SMARCA4 6 datasets
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 183 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 261 bp overlap
ChIP NPC_R1159Q GSE122631.SMARCA4.NPC_R1159Q 153 bp overlap
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 400 bp overlap
ChIP TTC-1240_SMARCB1-FL GSE124903.SMARCA4.TTC-1240_SMARCB1-FL 385 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 125 bp overlap
SMARCC1 4 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 91 bp overlap
ChIP SYO-1_shCt GSE139053.SMARCC1.SYO-1_shCt 129 bp overlap
ChIP TTC-1240 GSE124903.SMARCC1.TTC-1240 180 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCC1.TTC-1240_delC 178 bp overlap
SMC3 1 dataset
ChIP neural cell ENCFF795YGY 313 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 254 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 198 bp overlap
SS18 2 datasets
ChIP SYO-1_shRING1A-B GSE139053.SS18.SYO-1_shRING1A-B 219 bp overlap
ChIP SYO-1_shSSX GSE108025.SS18.SYO-1_shSSX 260 bp overlap
SUZ12 2 datasets
ChIP H1 ENCFF881NFR 260 bp overlap
ChIP hiPSC_WT GSE124903.SUZ12.hiPSC_WT 380 bp overlap
TAF1 2 datasets
ChIP SK-N-SH ENCFF630ERV 167 bp overlap
ChIP SK-N-SH ENCSR000BQF.TAF1.SK-N-SH 160 bp overlap
TEAD1 1 dataset
ChIP adipocyte GSE140782.TEAD1.adipocyte 139 bp overlap