chr1 : 233,361,815 – 233,362,214

399 bp 63 TFs 0 linked genes

This 399 bp open chromatin element has no linked target genes and is bound by 63 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

63 transcription factors

AR 4 datasets

ChIP LNCaP GSE80256.AR.LNCaP 247 bp overlap

ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 146 bp overlap

ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 158 bp overlap

ChIP VCaP_DHTTHZ1 GSE125245.AR.VCaP_DHTTHZ1 138 bp overlap

BCOR 1 dataset

ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 156 bp overlap

BRD2 1 dataset

ChIP K-562_iBET-IFNG GSE138084.BRD2.K-562_iBET-IFNG 322 bp overlap

BRD4 3 datasets

ChIP HEK293T GSE51633.BRD4.HEK293T 128 bp overlap

ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 253 bp overlap

ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 399 bp overlap

CBFB 1 dataset

ChIP ME-1 GSE46044.CBFB.ME-1 204 bp overlap

CBX8 1 dataset

ChIP K-562 ENCSR000ATW.CBX8.K-562 174 bp overlap

CTCF 4 datasets

ChIP GSC23 GSE139416.CTCF.GSC23 287 bp overlap

ChIP T-47D_Y537S GSE148277.CTCF.T-47D_Y537S 236 bp overlap

ChIP erythroid GSE67783.CTCF.erythroid 163 bp overlap

ChIP glioblastoma_GBM3565 GSE139416.CTCF.glioblastoma_GBM3565 242 bp overlap

Cebpa 2 datasets

ChIP BLaER1 ENCFF031ISE 257 bp overlap

ChIP BLaER1 ENCFF460KDD 285 bp overlap

ELF3 1 dataset

Motif DE_12h DE_12h-ELF3_MA0640.3 9 bp overlap

ERF::FOXI1 1 dataset

Motif DE_12h DE_12h-ERFFOXI1_MA1935.2 10 bp overlap

ERG 1 dataset

ChIP SKNO-1 GSE23730.ERG.SKNO-1 203 bp overlap

ESR1 4 datasets

ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 265 bp overlap

ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 227 bp overlap

ChIP MCF-7_PaPE-1 GSE93510.ESR1.MCF-7_PaPE-1 399 bp overlap

ChIP MDA-MB-134-VI_ESTROGEN GSE51022.ESR1.MDA-MB-134-VI_ESTROGEN 347 bp overlap

ETV1 1 dataset

Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap

ETV2::FOXI1 1 dataset

Motif DE_12h DE_12h-ETV2FOXI1_MA1942.2 11 bp overlap

EZH2 3 datasets

ChIP A-1847 GSE95643.EZH2.A-1847 362 bp overlap

ChIP ProEs GSE59087.EZH2.ProEs 399 bp overlap

ChIP ProEs_SHCTR GSE59087.EZH2.ProEs_SHCTR 260 bp overlap

FLI1::FOXI1 1 dataset

Motif DE_12h DE_12h-FLI1FOXI1_MA1950.2 11 bp overlap

FOXA1 1 dataset

ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 294 bp overlap

FOXJ2::ELF1 1 dataset

Motif DE_12h DE_12h-FOXJ2ELF1_MA1952.2 11 bp overlap

GABPA 1 dataset

ChIP K-562 ENCSR000BLO.GABPA.K-562 344 bp overlap

GATA2 1 dataset

ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 236 bp overlap

GSPT2 1 dataset

ChIP HEK293T GSE35197.GSPT2.HEK293T 314 bp overlap

IKZF1 2 datasets

Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap

ChIP K562 ENCFF771OHZ 399 bp overlap

IKZF2 1 dataset

Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap

IKZF3 1 dataset

ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 235 bp overlap

Ikzf3 1 dataset

Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap

MED26 1 dataset

ChIP U2OS_SHCTR GSE73742.MED26.U2OS_SHCTR 326 bp overlap

MORC2 1 dataset

ChIP HeLa_V5-MORC2-KO-W505A-MORC2-mut GSE95451.MORC2.HeLa_V5-MORC2-KO-W505A-MORC2-mut 286 bp overlap

NCOR1 1 dataset

ChIP HEK293T_SICTR GSE35197.NCOR1.HEK293T_SICTR 175 bp overlap

NFKB1 1 dataset

ChIP HEK293T GSE129618.NFKB1.HEK293T 239 bp overlap

NR3C1 1 dataset

ChIP A-549 ENCSR000BJR.NR3C1.A-549 108 bp overlap

OGG1 1 dataset

ChIP HEK293 GSE89017.OGG1.HEK293 273 bp overlap

POU2F1 1 dataset

ChIP IMR-90_TERT GSE38303.POU2F1.IMR-90_TERT 168 bp overlap

POU5F1_M 1 dataset

ChIP DE_D1 DED1-OCT4-M_Batch_II 277 bp overlap

PPARG 1 dataset

ChIP HUVEC-C_PPARG_HYPO GSE50144.PPARG.HUVEC-C_PPARG_HYPO 187 bp overlap

RBPJ 1 dataset

Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap

RELA 2 datasets

ChIP 786-O GSE86092.RELA.786-O 225 bp overlap

Motif DE_12h DE_12h-RELA_MA0107.1 10 bp overlap

REST 2 datasets

ChIP hiPSC_IB12 GSE106870.REST.hiPSC_IB12 156 bp overlap

ChIP neural ENCSR000BTV.REST.neural 141 bp overlap

RNF2 5 datasets

ChIP K-562 ENCSR820GND.RNF2.K-562 399 bp overlap

ChIP K-562 ENCSR138FUZ.RNF2.K-562 128 bp overlap

ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 384 bp overlap

ChIP SYO-1_shRING1A-B GSE139053.RNF2.SYO-1_shRING1A-B 258 bp overlap

ChIP fibroblast GSE139053.RNF2.fibroblast 399 bp overlap

SMAD2-3 1 dataset

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 258 bp overlap

SMARCA4 1 dataset

ChIP K-562 ENCSR643VTW.SMARCA4.K-562 351 bp overlap

SMARCC1 1 dataset

ChIP hiPSC GSE124903.SMARCC1.hiPSC 174 bp overlap

SPI1 1 dataset

ChIP macrophage_IFNG GSE47188.SPI1.macrophage_IFNG 211 bp overlap

STAT1 1 dataset

Motif DE_12h DE_12h-STAT1_MA0137.4 9 bp overlap

STAT3 1 dataset

Motif DE_12h DE_12h-STAT3_MA0144.3 9 bp overlap

SUZ12 2 datasets

ChIP Aska-SS GSE108025.SUZ12.Aska-SS 385 bp overlap

ChIP K562 ENCFF397TBJ 325 bp overlap

Stat5b 1 dataset

Motif DE_12h DE_12h-Stat5b_MA1625.2 9 bp overlap

TBL1X 1 dataset

ChIP HEK293T GSE35197.TBL1X.HEK293T 262 bp overlap

TEAD4 1 dataset

ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 216 bp overlap

TP63 1 dataset

ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 141 bp overlap

ZBTB48 1 dataset

ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 267 bp overlap

ZBTB7A 1 dataset

ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 232 bp overlap

ZFP36 1 dataset

ChIP K-562 ENCSR776CYN.ZFP36.K-562 122 bp overlap

ZNF143 2 datasets

ChIP FLP143HA_T0 GSE39263.ZNF143.FLP143HA_T0 311 bp overlap

ChIP FLP143HA_T4 GSE39263.ZNF143.FLP143HA_T4 200 bp overlap

ZNF175 1 dataset

Motif DE_12h DE_12h-ZNF175_MA2332.1 9 bp overlap

ZNF263 1 dataset

ChIP K-562 ENCSR000EWN.ZNF263.K-562 373 bp overlap

ZNF317 1 dataset

Motif DE_12h DE_12h-ZNF317_MA1593.2 8 bp overlap

ZNF331 1 dataset

Motif DE_12h DE_12h-ZNF331_MA1726.2 10 bp overlap

ZNF496 1 dataset

ChIP HEK293T GSE78099.ZNF496.HEK293T 281 bp overlap

ZSCAN29 3 datasets

ChIP K-562 ENCSR175SZH.ZSCAN29.K-562 241 bp overlap

ChIP K562 ENCFF797SOU 246 bp overlap

ChIP K562 ENCFF797SOU 399 bp overlap

Zfp809 1 dataset

Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap

Zic1::Zic2 1 dataset

Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap

Zic2 2 datasets

Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap

Zic3 1 dataset

Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap