chr15 : 39,888,792 39,889,226
434 bp 62 TFs 5 linked genes
This 434 bp open chromatin element is linked to 5 target genes and is bound by 62 transcription factors.
Linked Genes
5 genes
Gene Expression Dist. to TSS Distance Link type
GPR176 31.3 kb Distal Multiome
EIF2AK4 45.1 kb Distal Multiome
SRP14 150.2 kb Distal Multiome
SRP14-DT 150.3 kb Distal Multiome
BUB1B 272.1 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr15:39,883,792 – 39,894,226
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
62 transcription factors
Source
Cell type
AR 2 datasets
ChIP LNCaP_SHGATA2_R1881 GSE69043.AR.LNCaP_SHGATA2_R1881 107 bp overlap
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 79 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 412 bp overlap
BAF155 1 dataset
ChIP VCaP_shARID1A GSE110655.BAF155.VCaP_shARID1A 400 bp overlap
BRD4 2 datasets
ChIP HEK293T GSE39579.BRD4.HEK293T 185 bp overlap
ChIP LNCaP-C4-2_F133V GSE88871.BRD4.LNCaP-C4-2_F133V 151 bp overlap
CBFA2T3 2 datasets
ChIP K-562 GSE142227.CBFA2T3.K-562 142 bp overlap
ChIP K562 ENCFF673OEZ 411 bp overlap
CCNT2 1 dataset
ChIP K-562 ENCSR000DOA.CCNT2.K-562 238 bp overlap
CDX2 2 datasets
ChIP Caco-2_DIFF GSE23436.CDX2.Caco-2_DIFF 286 bp overlap
ChIP Caco-2_PROLIF GSE23436.CDX2.Caco-2_PROLIF 198 bp overlap
CEBPD 1 dataset
ChIP K-562 ENCSR000BVY.CEBPD.K-562 103 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 218 bp overlap
CTBP1 1 dataset
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 326 bp overlap
CTCF 46 datasets
ChIP 22Rv1 ENCSR857PBV.CTCF.22Rv1 351 bp overlap
ChIP 22Rv1_hydroxy_10nM_4h ENCSR847XGE.CTCF.22Rv1_hydroxy_10nM_4h 389 bp overlap
ChIP A-673 ENCSR611JJS.CTCF.A-673 344 bp overlap
ChIP A673 ENCFF123WOM 431 bp overlap
ChIP D54 ENCSR000DKN.CTCF.D54 142 bp overlap
ChIP FT282 GSE131931.CTCF.FT282 183 bp overlap
ChIP GM04025_B-lymphocytes GSE111170.CTCF.GM04025_B-lymphocytes 186 bp overlap
ChIP GM09237_B-lymphocytes GSE111170.CTCF.GM09237_B-lymphocytes 164 bp overlap
ChIP GM12878 ENCSR000DZN.CTCF.GM12878 126 bp overlap
ChIP GM17942 GSE76922.CTCF.GM17942 268 bp overlap
ChIP GM23338 ENCFF772DML 201 bp overlap
ChIP HFFc6 ENCFF005CJI 434 bp overlap
ChIP HeLa-S3 ENCFF565UFR 161 bp overlap
ChIP HeLa-S3 ENCSR000AOA.CTCF.HeLa-S3 199 bp overlap
ChIP HeLa-S3 ENCSR000DLO.CTCF.HeLa-S3 109 bp overlap
ChIP HeLa-S3 ENCSR000DUB.CTCF.HeLa-S3 122 bp overlap
ChIP HepG2 ENCFF757EKU 351 bp overlap
ChIP ID00014 GSE76922.CTCF.ID00014 434 bp overlap
ChIP KARPAS422 ENCSR113REG.CTCF.KARPAS422 333 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 408 bp overlap
ChIP OCI-LY3 ENCFF939BYJ 405 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 325 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 257 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 188 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 246 bp overlap
ChIP Peyer's patch ENCFF701KWW 339 bp overlap
ChIP Peyers-patch ENCSR799WDT.CTCF.Peyers-patch 158 bp overlap
ChIP RWPE-2 ENCSR856JJB.CTCF.RWPE-2 434 bp overlap
ChIP RWPE2 ENCFF911IEE 372 bp overlap
ChIP RWPE2 ENCFF911IEE 358 bp overlap
ChIP SU-DHL-6 ENCFF116KKR 434 bp overlap
ChIP colon_transverse ENCSR102CSD.CTCF.colon_transverse 262 bp overlap
ChIP endothelial cell of umbilical vein ENCFF455OQM 197 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 121 bp overlap
ChIP endothelial_umbilical-vein ENCSR000DLW.CTCF.endothelial_umbilical-vein 173 bp overlap
ChIP foreskin keratinocyte ENCFF980OWR 286 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 370 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 434 bp overlap
ChIP keratinocyte ENCSR000ALJ.CTCF.keratinocyte 262 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 155 bp overlap
ChIP keratinocyte ENCSR000DNC.CTCF.keratinocyte 100 bp overlap
ChIP pancreas ENCSR000DND.CTCF.pancreas 114 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d0 186 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d6 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d6 148 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 380 bp overlap
ChIP skeletal muscle myoblast ENCFF813BQI 291 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 405 bp overlap
ERG 3 datasets
ChIP VCaP_shARID1A GSE110655.ERG.VCaP_shARID1A 424 bp overlap
ChIP aortic-endothelial-cell_D39 GSE139377.ERG.aortic-endothelial-cell_D39 164 bp overlap
ChIP aortic-endothelial-cell_D49 GSE139377.ERG.aortic-endothelial-cell_D49 173 bp overlap
ESR1 16 datasets
ChIP MCF-7 GSE68355.ESR1.MCF-7 281 bp overlap
ChIP MCF-7 GSE103023.ESR1.MCF-7 180 bp overlap
ChIP MCF-7_ARID1A-KO_4-OHT GSE123284.ESR1.MCF-7_ARID1A-KO_4-OHT 244 bp overlap
ChIP MCF-7_DMSO GSE125594.ESR1.MCF-7_DMSO 285 bp overlap
ChIP MCF-7_E2+4OHT_SRC-3 GSE119702.ESR1.MCF-7_E2+4OHT_SRC-3 176 bp overlap
ChIP MCF-7_Fulvestrant_HC11 GSE102882.ESR1.MCF-7_Fulvestrant_HC11 223 bp overlap
ChIP MCF-7_HC11 GSE102882.ESR1.MCF-7_HC11 308 bp overlap
ChIP MCF-7_ICI GSE125594.ESR1.MCF-7_ICI 261 bp overlap
ChIP MCF-7_LY2_ETOH GSE54592.ESR1.MCF-7_LY2_ETOH 141 bp overlap
ChIP MCF-7_PROG GSE68355.ESR1.MCF-7_PROG 337 bp overlap
ChIP MCF-7_R5020 GSE68355.ESR1.MCF-7_R5020 352 bp overlap
ChIP MCF-7_RAD001 GSE103023.ESR1.MCF-7_RAD001 247 bp overlap
ChIP MCF-7_SRC3_OHT GSE119702.ESR1.MCF-7_SRC3_OHT 176 bp overlap
ChIP MCF-7_parental GSE123284.ESR1.MCF-7_parental 284 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.ESR1.MCF-7_parental_4-hydroxytamoxifen 303 bp overlap
ChIP MCF-7_shTEAD4 GSE125594.ESR1.MCF-7_shTEAD4 226 bp overlap
EZH2 1 dataset
ChIP hepatocyte ENCFF118DKH 357 bp overlap
FOXA1 2 datasets
ChIP LNCaP_DHT24H GSE58428.FOXA1.LNCaP_DHT24H 98 bp overlap
ChIP MCF-7 GSE81714.FOXA1.MCF-7 253 bp overlap
FOXA2 5 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 256 bp overlap
ChIP BJ1-hTERT_GATA4 GSE90454.FOXA2.BJ1-hTERT_GATA4 223 bp overlap
ChIP Caco-2 GSE66218.FOXA2.Caco-2 250 bp overlap
ChIP DE DE-FOXA2-1 434 bp overlap
ChIP DE DE-FOXA2-2 434 bp overlap
FOXP1 1 dataset
ChIP Hep-G2 ENCSR369YUK.FOXP1.Hep-G2 122 bp overlap
GATA1 7 datasets
ChIP CD34_ERYTH_BIO GSE29194.GATA1.CD34_ERYTH_BIO 145 bp overlap
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 55 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 434 bp overlap
ChIP K-562 ENCSR000EFT.GATA1.K-562 188 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 306 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 414 bp overlap
ChIP K562 ENCFF094CMK 251 bp overlap
GATA2 7 datasets
ChIP K-562 ENCSR000DKA.GATA2.K-562 370 bp overlap
ChIP K562 ENCFF830LLA 434 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 258 bp overlap
ChIP WA09 GSE105081.GATA2.WA09 320 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 254 bp overlap
ChIP endothelial cell of umbilical vein ENCFF148NLK 432 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVW.GATA2.endothelial_umbilical-vein 275 bp overlap
GATA3 6 datasets
ChIP MCF-7_E2 GSE81510.GATA3.MCF-7_E2 314 bp overlap
ChIP MCF-7_E2 GSE60270.GATA3.MCF-7_E2 222 bp overlap
ChIP MCF-7_E2 GSE40129.GATA3.MCF-7_E2 130 bp overlap
ChIP MCF-7_E2_Dex GSE81510.GATA3.MCF-7_E2_Dex 296 bp overlap
ChIP MCF-7_ICI GSE81510.GATA3.MCF-7_ICI 184 bp overlap
ChIP WA09 GSE105081.GATA3.WA09 233 bp overlap
GATA4 8 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 274 bp overlap
ChIP DE DE-GATA4-1 434 bp overlap
ChIP DE DE-GATA4-2 434 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 401 bp overlap
ChIP YCC-3 GSE51705.GATA4.YCC-3 361 bp overlap
ChIP foregut GSE117136.GATA4.foregut 434 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 434 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 434 bp overlap
GATA6 17 datasets
ChIP AGS GSE51705.GATA6.AGS 389 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 425 bp overlap
ChIP DE DE-GATA6-1 434 bp overlap
ChIP DE DE-GATA6-2 434 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 434 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 434 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 434 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 434 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 434 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 434 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 407 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 434 bp overlap
ChIP foregut GSE117136.GATA6.foregut 434 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 434 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 434 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 434 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 400 bp overlap
HMBOX1 3 datasets
ChIP K-562 ENCSR757IIU.HMBOX1.K-562 336 bp overlap
ChIP K562 ENCFF055GAZ 401 bp overlap
ChIP K562 ENCFF317JJX 404 bp overlap
HNF4A 2 datasets
ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 347 bp overlap
ChIP Caco-2_PROLIF GSE23436.HNF4A.Caco-2_PROLIF 143 bp overlap
IKZF1 2 datasets
ChIP K-562 ENCSR395HWC.IKZF1.K-562 434 bp overlap
ChIP K562 ENCFF348IBL 257 bp overlap
JUN 1 dataset
ChIP DE_D1 S40-DE-d1-JUN-exp2 343 bp overlap
JUNB 1 dataset
ChIP HAEC GSE89970.JUNB.HAEC 180 bp overlap
KDM1A 2 datasets
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 217 bp overlap
ChIP pancreatic-progenitor_PP2-KDM1A-inh GSE104840.KDM1A.pancreatic-progenitor_PP2-KDM1A-inh 210 bp overlap
LDB1 1 dataset
ChIP K-562 GSE142227.LDB1.K-562 262 bp overlap
MAFG 1 dataset
ChIP K-562 ENCSR818DQV.MAFG.K-562 341 bp overlap
MED1 1 dataset
ChIP VCaP_R1881 GSE148358.MED1.VCaP_R1881 243 bp overlap
PGR 2 datasets
ChIP MCF-7_PROG GSE68355.PGR.MCF-7_PROG 351 bp overlap
ChIP MCF-7_R5020 GSE68355.PGR.MCF-7_R5020 272 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 329 bp overlap
POLR2A 1 dataset
ChIP GM23338 ENCFF450WCS 75 bp overlap
POU5F1 1 dataset
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 115 bp overlap
RAD21 6 datasets
ChIP GM12878 ENCSR000BMY.RAD21.GM12878 107 bp overlap
ChIP H1 ENCFF698EWO 241 bp overlap
ChIP HCT-116 ENCSR000BSB.RAD21.HCT-116 172 bp overlap
ChIP HCT116 ENCFF568PEO 311 bp overlap
ChIP HUVEC-C_hypoxia GSE94872.RAD21.HUVEC-C_hypoxia 175 bp overlap
ChIP Hep-G2 ENCSR054FKH.RAD21.Hep-G2 119 bp overlap
RELA 7 datasets
ChIP aortic-endothelial-cell_IL1B_D14 GSE139377.RELA.aortic-endothelial-cell_IL1B_D14 231 bp overlap
ChIP aortic-endothelial-cell_IL1B_D2 GSE139377.RELA.aortic-endothelial-cell_IL1B_D2 212 bp overlap
ChIP aortic-endothelial-cell_IL1B_D22 GSE139377.RELA.aortic-endothelial-cell_IL1B_D22 190 bp overlap
ChIP aortic-endothelial-cell_IL1B_D26 GSE139377.RELA.aortic-endothelial-cell_IL1B_D26 237 bp overlap
ChIP aortic-endothelial-cell_IL1B_D27 GSE139377.RELA.aortic-endothelial-cell_IL1B_D27 192 bp overlap
ChIP aortic-endothelial-cell_IL1B_D4 GSE139377.RELA.aortic-endothelial-cell_IL1B_D4 244 bp overlap
ChIP aortic-endothelial-cell_IL1B_D40 GSE139377.RELA.aortic-endothelial-cell_IL1B_D40 164 bp overlap
RUNX1 1 dataset
ChIP SKH1_10d GSE87283.RUNX1.SKH1_10d 137 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 425 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 398 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 270 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 367 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 407 bp overlap
SMC1A 1 dataset
ChIP Hep-G2 GSE76893.SMC1A.Hep-G2 168 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 327 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 434 bp overlap
SOX6 2 datasets
ChIP K-562 ENCSR788RSW.SOX6.K-562 378 bp overlap
ChIP K562 ENCFF059YCJ 434 bp overlap
STAG1 2 datasets
ChIP HMEC-1 GSE101921.STAG1.HMEC-1 180 bp overlap
ChIP Hep-G2 ENCSR167MTG.STAG1.Hep-G2 180 bp overlap
STAG2 1 dataset
ChIP HMEC-1 GSE101921.STAG2.HMEC-1 206 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 325 bp overlap
TAF7 1 dataset
ChIP WA01 ENCSR000BLU.TAF7.WA01 114 bp overlap
TAL1 4 datasets
ChIP K-562_dCas9-LSD1 GSE132212.TAL1.K-562_dCas9-LSD1 208 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 141 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 267 bp overlap
ChIP ProEs GSE59087.TAL1.ProEs 240 bp overlap
TBP 4 datasets
ChIP WA01 ENCSR000ECB.TBP.WA01 209 bp overlap
ChIP hESC GSE122298.TBP.hESC 139 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 140 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 193 bp overlap
TFAP2A 1 dataset
ChIP WA09 GSE105081.TFAP2A.WA09 276 bp overlap
TFAP2C 1 dataset
ChIP WA09 GSE105081.TFAP2C.WA09 265 bp overlap
TRPS1 1 dataset
ChIP MCF-7 GSE133072.TRPS1.MCF-7 184 bp overlap
YY1 1 dataset
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 246 bp overlap
ZEB2 1 dataset
ChIP K-562 ENCSR004GKA.ZEB2.K-562 350 bp overlap
ZNF750 1 dataset
ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 181 bp overlap
ZSCAN18 1 dataset
ChIP WTC11 ENCFF867QWX 220 bp overlap