chr14 : 59,565,440 – 59,566,978
1,538 bp 89 TFs 1 linked gene
This 1.5 kb open chromatin element is linked to CCDC175 and is bound by 89 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
CCDC175 950 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr14:59,560,440 – 59,571,978
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
89 transcription factors
Source
Cell type
ARNTL 1 dataset
ChIP U2OS_DMOG GSE85096.ARNTL.U2OS_DMOG 219 bp overlap
ASCL1 3 datasets
ChIP NCI-H2107 GSE69394.ASCL1.NCI-H2107 310 bp overlap
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 289 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 322 bp overlap
ASXL3 1 dataset
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 348 bp overlap
ATF4 2 datasets
ChIP K-562 ENCSR145TSJ.ATF4.K-562 374 bp overlap
ChIP K562 ENCFF674KTF 227 bp overlap
ATF7 2 datasets
ChIP MCF-7 ENCFF578WKB 349 bp overlap
ChIP MCF-7 ENCSR866QPZ.ATF7.MCF-7 344 bp overlap
BAP1 1 dataset
ChIP NCI-H1963_shNONT GSE145028.BAP1.NCI-H1963_shNONT 725 bp overlap
BCL11A 1 dataset
Motif DE_72h DE_72h-BCL11A_MA2324.1 7 bp overlap
BRD4 1 dataset
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 354 bp overlap
CDX2 5 datasets
ChIP Caco-2_DIFF GSE23436.CDX2.Caco-2_DIFF 139 bp overlap
ChIP LS180 GSE31939.CDX2.LS180 332 bp overlap
ChIP LS180_125 GSE31939.CDX2.LS180_125 156 bp overlap
ChIP LS180_125 GSE31939.CDX2.LS180_125 167 bp overlap
ChIP LS180_125 GSE31939.CDX2.LS180_125 134 bp overlap
CEBPB 1 dataset
ChIP IMR-90 ENCFF468UGY 251 bp overlap
CREBBP 1 dataset
ChIP LS180 GSE39277.CREBBP.LS180 93 bp overlap
CTCF 1 dataset
ChIP colon_transverse ENCSR102CSD.CTCF.colon_transverse 220 bp overlap
Cebpa 5 datasets
ChIP BLaER1 ENCFF274GAT 303 bp overlap
ChIP BLaER1 ENCFF335XTP 273 bp overlap
ChIP BLaER1 ENCFF364PUR 211 bp overlap
ChIP BLaER1 ENCFF460KDD 251 bp overlap
ChIP BLaER1 ENCFF798NMV 192 bp overlap
DUX4 1 dataset
Motif DE_72h DE_72h-DUX4_MA0468.1 11 bp overlap
EMSY 1 dataset
ChIP K562 ENCFF511ZZZ 224 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 175 bp overlap
ESR1 1 dataset
ChIP MCF-7_RUNX2_DOX GSE86538.ESR1.MCF-7_RUNX2_DOX 134 bp overlap
FOXA2 3 datasets
ChIP Caco-2 GSE66218.FOXA2.Caco-2 270 bp overlap
ChIP DE DE-FOXA2-1 1028 bp overlap
ChIP DE DE-FOXA2-2 1027 bp overlap
FOXO1::FLI1 1 dataset
Motif DE_72h DE_72h-FOXO1FLI1_MA1956.2 13 bp overlap
GATA3 1 dataset
ChIP MCF-7_E2 GSE81510.GATA3.MCF-7_E2 142 bp overlap
GATA4 8 datasets
ChIP DE DE-GATA4-1 1090 bp overlap
ChIP DE DE-GATA4-2 1094 bp overlap
Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 200 bp overlap
ChIP foregut GSE117136.GATA4.foregut 482 bp overlap
ChIP foregut GSE117136.GATA4.foregut 413 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 447 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 242 bp overlap
GATA6 21 datasets
ChIP AGS GSE51705.GATA6.AGS 221 bp overlap
ChIP AGS GSE51936.GATA6.AGS 107 bp overlap
ChIP DE DE-GATA6-1 1042 bp overlap
ChIP DE DE-GATA6-2 1300 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 332 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 441 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 326 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 400 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 1144 bp overlap
ChIP ESO-26 GSE132680.GATA6.ESO-26 577 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 499 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 453 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 326 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 406 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 223 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 230 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 136 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 493 bp overlap
ChIP foregut GSE117136.GATA6.foregut 439 bp overlap
ChIP foregut GSE117136.GATA6.foregut 370 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 296 bp overlap
GFI1 1 dataset
Motif DE_72h DE_72h-GFI1_MA0038.3 11 bp overlap
GLIS1 3 datasets
ChIP HEK293 ENCFF299RSE 223 bp overlap
ChIP HEK293 ENCFF299RSE 423 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 105 bp overlap
GLIS3 1 dataset
Motif DE_72h DE_72h-GLIS3_MA0737.1 14 bp overlap
Gfi1B 1 dataset
Motif DE_72h DE_72h-Gfi1B_MA0483.2 10 bp overlap
Gli1 1 dataset
Motif DE_72h DE_72h-Gli1_MA1990.2 10 bp overlap
Gli2 1 dataset
Motif DE_72h DE_72h-Gli2_MA0734.4 9 bp overlap
HNF4A 7 datasets
ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 241 bp overlap
ChIP Caco-2_PROLIF GSE23436.HNF4A.Caco-2_PROLIF 209 bp overlap
ChIP GP5D GSE51234.HNF4A.GP5D 709 bp overlap
ChIP GP5D_SIRAD21 GSE51234.HNF4A.GP5D_SIRAD21 596 bp overlap
ChIP LoVo_PHASEM GSE51290.HNF4A.LoVo_PHASEM 196 bp overlap
ChIP LoVo_PHASES GSE51290.HNF4A.LoVo_PHASES 263 bp overlap
ChIP LoVo_PHASES GSE51290.HNF4A.LoVo_PHASES 443 bp overlap
IKZF2 1 dataset
Motif DE_72h DE_72h-IKZF2_MA2326.1 6 bp overlap
IRF7 1 dataset
Motif DE_72h DE_72h-IRF7_MA0772.2 13 bp overlap
IRF9 1 dataset
Motif DE_72h DE_72h-IRF9_MA0653.1 15 bp overlap
Irf1 1 dataset
Motif DE_72h DE_72h-Irf1_MA0050.4 11 bp overlap
JUN 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 180 bp overlap
KDM1A 1 dataset
ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 141 bp overlap
KLF5 1 dataset
ChIP ESO-26 GSE132680.KLF5.ESO-26 477 bp overlap
MAFF 1 dataset
ChIP HepG2 ENCFF452YUT 123 bp overlap
MAFG 1 dataset
ChIP K-562 ENCSR818DQV.MAFG.K-562 158 bp overlap
MAFK 6 datasets
ChIP A549 ENCFF371EPR 94 bp overlap
ChIP H1 ENCFF854XWE 83 bp overlap
ChIP Hep-G2 ENCSR000EDZ.MAFK.Hep-G2 85 bp overlap
ChIP HepG2 ENCFF743ZOF 95 bp overlap
ChIP HepG2 ENCFF767LDG 115 bp overlap
ChIP WA01 ENCSR000EBS.MAFK.WA01 51 bp overlap
MAX 2 datasets
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 295 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 283 bp overlap
MYB 1 dataset
ChIP PF-382 GSE94000.MYB.PF-382 311 bp overlap
MYC 2 datasets
ChIP GP5D GSE51234.MYC.GP5D 380 bp overlap
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 178 bp overlap
MYOD1 1 dataset
ChIP myoblast GSE50413.MYOD1.myoblast 266 bp overlap
NANOG 5 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 398 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 964 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 477 bp overlap
ChIP hESC GSE18292.NANOG.hESC 169 bp overlap
ChIP hESC GSE20650.NANOG.hESC 193 bp overlap
NIPBL 2 datasets
ChIP GP5D GSE51234.NIPBL.GP5D 500 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 315 bp overlap
NKX6-3 1 dataset
Motif DE_72h DE_72h-NKX6-3_MA1530.2 8 bp overlap
NOTCH1 1 dataset
ChIP HPBALL GSE39263.NOTCH1.HPBALL 271 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 79 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 213 bp overlap
POU5F1 1 dataset
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 405 bp overlap
PRDM1 1 dataset
ChIP HEK293 GSE76494.PRDM1.HEK293 180 bp overlap
PROX1 2 datasets
ChIP SW480 GSE60390.PROX1.SW480 149 bp overlap
ChIP SW480 GSE60390.PROX1.SW480 197 bp overlap
REST 1 dataset
ChIP colorectal-cancer_CRC121_intact GSE112555.REST.colorectal-cancer_CRC121_intact 262 bp overlap
RREB1 1 dataset
Motif DE_72h DE_72h-RREB1_MA0073.2 19 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 153 bp overlap
SIX2 2 datasets
ChIP HEK GSE73865.SIX2.HEK 91 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 87 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 1024 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 283 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 820 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 350 bp overlap
SMAD4 1 dataset
ChIP Caco-2 GSE112946.SMAD4.Caco-2 238 bp overlap
SMARCA4 1 dataset
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 705 bp overlap
SMARCB1 1 dataset
ChIP hiPSC GSE124903.SMARCB1.hiPSC 189 bp overlap
SNAI2 2 datasets
ChIP keratinocyte_LacZ GSE55421.SNAI2.keratinocyte_LacZ 355 bp overlap
ChIP keratinocyte_SHCTR GSE55421.SNAI2.keratinocyte_SHCTR 205 bp overlap
SOX10 1 dataset
Motif DE_72h DE_72h-SOX10_MA0442.3 6 bp overlap
SOX17 2 datasets
ChIP DE_D2 DED2-SOX17_Batch_II 277 bp overlap
ChIP DE_D2 DED2-SOX17_Batch_II 313 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 980 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 357 bp overlap
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 449 bp overlap
STAT1::STAT2 1 dataset
Motif DE_72h DE_72h-STAT1STAT2_MA0517.2 13 bp overlap
Stat2 1 dataset
Motif DE_72h DE_72h-Stat2_MA1623.2 10 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 179 bp overlap
TBX18 1 dataset
Motif DE_72h DE_72h-TBX18_MA1565.2 9 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 290 bp overlap
TEAD1 1 dataset
ChIP HUCCT1 GSE68296.TEAD1.HUCCT1 150 bp overlap
TFAP2A 1 dataset
Motif DE_72h DE_72h-TFAP2A_MA0872.1 13 bp overlap
TFAP2B 1 dataset
Motif DE_72h DE_72h-TFAP2B_MA0813.1 13 bp overlap
TFAP2C 1 dataset
Motif DE_72h DE_72h-TFAP2C_MA0815.1 13 bp overlap
TFAP4 1 dataset
ChIP DLD-1 GSE46935.TFAP4.DLD-1 118 bp overlap
ZIC1 1 dataset
Motif DE_72h DE_72h-ZIC1_MA0696.1 14 bp overlap
ZIC2 2 datasets
ChIP HEK293 ENCFF033NQQ 202 bp overlap
ChIP HEK293 ENCFF033NQQ 471 bp overlap
ZIC4 1 dataset
Motif DE_72h DE_72h-ZIC4_MA0751.2 14 bp overlap
ZIC5 1 dataset
Motif DE_72h DE_72h-ZIC5_MA1584.2 15 bp overlap
ZIM3 4 datasets
Motif DE_72h DE_72h-ZIM3_MA1709.2 11 bp overlap
Motif DE_72h DE_72h-ZIM3_MA1709.2 11 bp overlap
ChIP HEK293 GSE76494.ZIM3.HEK293 284 bp overlap
ChIP HEK293T GSE78099.ZIM3.HEK293T 314 bp overlap
ZKSCAN1 1 dataset
Motif DE_72h DE_72h-ZKSCAN1_MA1585.2 9 bp overlap
ZNF354C 1 dataset
Motif DE_72h DE_72h-ZNF354C_MA0130.1 6 bp overlap
ZNF423 2 datasets
ChIP HEK293 ENCSR477OJI.ZNF423.HEK293 213 bp overlap
ChIP WTC11 ENCFF574PBR 317 bp overlap
ZNF558 1 dataset
Motif DE_72h DE_72h-ZNF558_MA2335.1 29 bp overlap
ZNF660 1 dataset
ChIP HEK293 ENCSR283DOU.ZNF660.HEK293 95 bp overlap
ZNF692 1 dataset
ChIP HEK293 ENCSR418MKG.ZNF692.HEK293 159 bp overlap
Zfp335 1 dataset
Motif DE_72h DE_72h-Zfp335_MA2002.2 7 bp overlap
Znf423 1 dataset
Motif DE_72h DE_72h-Znf423_MA0116.1 15 bp overlap
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