chr13 : 44,140,091 – 44,140,583
492 bp 67 TFs 2 linked genes
This 492 bp open chromatin element is linked to LINC00390 and SMIM2-AS1 and is bound by 67 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC00390 1.4 kb Proximal Proximity
SMIM2-AS1 1.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:44,135,091 – 44,145,583
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
67 transcription factors
Source
Cell type
AHR 1 dataset
ChIP MCF-7_TCDD_45min GSE90550.AHR.MCF-7_TCDD_45min 199 bp overlap
AR 1 dataset
ChIP LNCaP_GFP_shFOXA1_Ethanol GSE128883.AR.LNCaP_GFP_shFOXA1_Ethanol 240 bp overlap
ARID1A 3 datasets
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 492 bp overlap
ChIP MCF-7_DCDT GSE123284.ARID1A.MCF-7_DCDT 369 bp overlap
ChIP MCF-7_Fulvestrant GSE123284.ARID1A.MCF-7_Fulvestrant 421 bp overlap
ASCL1 3 datasets
Motif DE_72h DE_72h-ASCL1_MA1631.2 9 bp overlap
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 109 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 309 bp overlap
BRD4 4 datasets
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 173 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 193 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 479 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 434 bp overlap
CBX1 1 dataset
ChIP Hep-G2 ENCSR819WZE.CBX1.Hep-G2 131 bp overlap
CREBBP 1 dataset
ChIP MCF-7 ERP000901.CREBBP.MCF-7 153 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 251 bp overlap
E2F1 1 dataset
ChIP MCF-7 ENCSR000EWX.E2F1.MCF-7 325 bp overlap
ESR1 5 datasets
ChIP MCF-7_D538G GSE148277.ESR1.MCF-7_D538G 252 bp overlap
ChIP MCF-7_D538G_DMSO GSE148277.ESR1.MCF-7_D538G_DMSO 215 bp overlap
ChIP MCF-7_E2+4OHT_SRC-3 GSE119702.ESR1.MCF-7_E2+4OHT_SRC-3 385 bp overlap
ChIP MCF-7_SRC3_OHT GSE119702.ESR1.MCF-7_SRC3_OHT 385 bp overlap
ChIP MCF-7_estradiol_4h GSE99626.ESR1.MCF-7_estradiol_4h 235 bp overlap
ESR1_Y537C 1 dataset
ChIP MCF-7_ESR1_mutant_LTED GSE100074.ESR1_Y537C.MCF-7_ESR1_mutant_LTED 277 bp overlap
ESR1_Y537S 1 dataset
ChIP MCF-7_E2 GSE94493.ESR1_Y537S.MCF-7_E2 172 bp overlap
FEZF1 1 dataset
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 226 bp overlap
FIGLA 1 dataset
Motif DE_72h DE_72h-FIGLA_MA0820.2 6 bp overlap
FOXA1 84 datasets
ChIP 22Rv1 GSE96652.FOXA1.22Rv1 335 bp overlap
ChIP 22Rv1 GSE85558.FOXA1.22Rv1 200 bp overlap
ChIP 22Rv1_CST GSE129951.FOXA1.22Rv1_CST 440 bp overlap
ChIP 22Rv1_CST GSE123618.FOXA1.22Rv1_CST 308 bp overlap
ChIP 22Rv1_CST_Crispr GSE123618.FOXA1.22Rv1_CST_Crispr 287 bp overlap
ChIP 22Rv1_CST_Crispr-36 GSE123618.FOXA1.22Rv1_CST_Crispr-36 349 bp overlap
ChIP 22Rv1_CST_Crispr-70 GSE123618.FOXA1.22Rv1_CST_Crispr-70 392 bp overlap
ChIP 22Rv1_CST_Crispr_WT3 GSE123618.FOXA1.22Rv1_CST_Crispr_WT3 347 bp overlap
ChIP 22Rv1_Dox GSE85558.FOXA1.22Rv1_Dox 312 bp overlap
ChIP 22Rv1_R1881 GSE80742.FOXA1.22Rv1_R1881 319 bp overlap
ChIP 22Rv1_TFS_Crispr-36 GSE123618.FOXA1.22Rv1_TFS_Crispr-36 214 bp overlap
ChIP 22Rv1_TFS_Crispr_WT3 GSE123618.FOXA1.22Rv1_TFS_Crispr_WT3 289 bp overlap
ChIP 22Rv1_i176m_CST GSE123618.FOXA1.22Rv1_i176m_CST 301 bp overlap
ChIP 22Rv1_r261g_CST GSE123618.FOXA1.22Rv1_r261g_CST 385 bp overlap
ChIP HepG2 ENCFF207NVJ 281 bp overlap
ChIP HepG2 ENCFF361KNY 285 bp overlap
ChIP HepG2 ENCFF740VZW 78 bp overlap
ChIP LAPC-4_CST_DHT GSE123618.FOXA1.LAPC-4_CST_DHT 206 bp overlap
ChIP LNCaP-C4-2B_CST GSE123618.FOXA1.LNCaP-C4-2B_CST 213 bp overlap
ChIP LNCaP-abl GSE63034.FOXA1.LNCaP-abl 167 bp overlap
ChIP LNCaP_DSG GSE114737.FOXA1.LNCaP_DSG 245 bp overlap
ChIP LNCaP_ETOH24H GSE58428.FOXA1.LNCaP_ETOH24H 350 bp overlap
ChIP LNCaP_FENG_shFOXA1_Ethanol GSE128883.FOXA1.LNCaP_FENG_shFOXA1_Ethanol 369 bp overlap
ChIP LNCaP_G87R_shFOXA1 GSE128883.FOXA1.LNCaP_G87R_shFOXA1 186 bp overlap
ChIP LNCaP_GSK GSE148926.FOXA1.LNCaP_GSK 189 bp overlap
ChIP LNCaP_S2101-4H GSE114266.FOXA1.LNCaP_S2101-4H 256 bp overlap
ChIP LNCaP_TFS GSE123618.FOXA1.LNCaP_TFS 334 bp overlap
ChIP LNCaP_VEH GSE114266.FOXA1.LNCaP_VEH 225 bp overlap
ChIP LS180 GSE140533.FOXA1.LS180 233 bp overlap
ChIP MCF-7 ENCFF465LTH 177 bp overlap
ChIP MCF-7 GSE72249.FOXA1.MCF-7 315 bp overlap
ChIP MCF-7 GSE81714.FOXA1.MCF-7 281 bp overlap
ChIP MCF-7 GSE140185.FOXA1.MCF-7 277 bp overlap
ChIP MCF-7 ERP001226.FOXA1.MCF-7 210 bp overlap
ChIP MCF-7 ERP000380.FOXA1.MCF-7 220 bp overlap
ChIP MCF-7 GSE80808.FOXA1.MCF-7 276 bp overlap
ChIP MCF-7 GSE60270.FOXA1.MCF-7 190 bp overlap
ChIP MCF-7 GSE59530.FOXA1.MCF-7 254 bp overlap
ChIP MCF-7 ENCSR126YEB.FOXA1.MCF-7 282 bp overlap
ChIP MCF-7_4OH-Tam GSE75201.FOXA1.MCF-7_4OH-Tam 145 bp overlap
ChIP MCF-7_ARID1A-KO GSE140185.FOXA1.MCF-7_ARID1A-KO 186 bp overlap
ChIP MCF-7_DEX GSE72249.FOXA1.MCF-7_DEX 361 bp overlap
ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 360 bp overlap
ChIP MCF-7_E2 GSE23852.FOXA1.MCF-7_E2 293 bp overlap
ChIP MCF-7_E2 GSE72249.FOXA1.MCF-7_E2 314 bp overlap
ChIP MCF-7_E2 GSE59530.FOXA1.MCF-7_E2 238 bp overlap
ChIP MCF-7_E2_TAM ERP000380.FOXA1.MCF-7_E2_TAM 201 bp overlap
ChIP MCF-7_E2_TNF GSE59530.FOXA1.MCF-7_E2_TNF 175 bp overlap
ChIP MCF-7_ETOH GSE23852.FOXA1.MCF-7_ETOH 294 bp overlap
ChIP MCF-7_JC4690 GSE126004.FOXA1.MCF-7_JC4690 355 bp overlap
ChIP MCF-7_JC4691 GSE126004.FOXA1.MCF-7_JC4691 425 bp overlap
ChIP MCF-7_JC4692 GSE126004.FOXA1.MCF-7_JC4692 391 bp overlap
ChIP MCF-7_JC4693 GSE126004.FOXA1.MCF-7_JC4693 373 bp overlap
ChIP MCF-7_JC4694 GSE126004.FOXA1.MCF-7_JC4694 313 bp overlap
ChIP MCF-7_JC4695 GSE126004.FOXA1.MCF-7_JC4695 356 bp overlap
ChIP MCF-7_JC4696 GSE126004.FOXA1.MCF-7_JC4696 338 bp overlap
ChIP MCF-7_JC4697 GSE126004.FOXA1.MCF-7_JC4697 321 bp overlap
ChIP MCF-7_TAMR_E2_TAM ERP000380.FOXA1.MCF-7_TAMR_E2_TAM 311 bp overlap
ChIP MCF-7_TNF GSE59530.FOXA1.MCF-7_TNF 261 bp overlap
ChIP MCF-7_estrogen_ab1 GSE112969.FOXA1.MCF-7_estrogen_ab1 320 bp overlap
ChIP MCF-7_estrogen_ab2 GSE112969.FOXA1.MCF-7_estrogen_ab2 450 bp overlap
ChIP MCF-7_shCTRL GSE132432.FOXA1.MCF-7_shCTRL 400 bp overlap
ChIP MCF-7_shNR2F2 GSE132432.FOXA1.MCF-7_shNR2F2 357 bp overlap
ChIP MCF-7_vehicle_ab1 GSE112969.FOXA1.MCF-7_vehicle_ab1 340 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 421 bp overlap
ChIP T-47D_JC4742 GSE126004.FOXA1.T-47D_JC4742 183 bp overlap
ChIP T-47D_JC4744 GSE126004.FOXA1.T-47D_JC4744 223 bp overlap
ChIP T-47D_JC4745 GSE126004.FOXA1.T-47D_JC4745 305 bp overlap
ChIP T-47D_JC4747 GSE126004.FOXA1.T-47D_JC4747 249 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 332 bp overlap
ChIP T-47D_shRNF2 GSE137579.FOXA1.T-47D_shRNF2 149 bp overlap
ChIP T-47D_shRNF2_24h GSE137579.FOXA1.T-47D_shRNF2_24h 202 bp overlap
ChIP T-47D_shRNF2_8h GSE137579.FOXA1.T-47D_shRNF2_8h 164 bp overlap
ChIP ZR-75-1_estrogen_ab2 GSE112969.FOXA1.ZR-75-1_estrogen_ab2 272 bp overlap
ChIP ZR-75-1_vehicle_ab2 GSE112969.FOXA1.ZR-75-1_vehicle_ab2 319 bp overlap
ChIP ZR751 GSE72249.FOXA1.ZR751 269 bp overlap
ChIP ZR751_DEX GSE72249.FOXA1.ZR751_DEX 236 bp overlap
ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 400 bp overlap
ChIP ZR751_E2_TAM ERP000380.FOXA1.ZR751_E2_TAM 226 bp overlap
ChIP breast-cancer_3487 GSE126004.FOXA1.breast-cancer_3487 220 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 171 bp overlap
ChIP breast_tumor_Male_19 GSE104399.FOXA1.breast_tumor_Male_19 342 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 264 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.FOXA1.primary-breast-cancer_B2_DSG 428 bp overlap
FOXA2 8 datasets
ChIP DE DE-FOXA2-1 481 bp overlap
ChIP DE DE-FOXA2-2 492 bp overlap
ChIP HepG2 ENCFF533COJ 297 bp overlap
ChIP HepG2 ENCFF570ABM 402 bp overlap
ChIP HepG2 ENCFF894AYY 163 bp overlap
ChIP colorectal-cancer_type-C GSE106921.FOXA2.colorectal-cancer_type-C 281 bp overlap
ChIP liver_CARN1618 ERP008682.FOXA2.liver_CARN1618 327 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 316 bp overlap
FOXA3 1 dataset
ChIP HepG2 ENCFF005KGL 361 bp overlap
GATA2 2 datasets
ChIP LNCaP GSE52725.GATA2.LNCaP 255 bp overlap
ChIP LNCaP GSE38391.GATA2.LNCaP 256 bp overlap
GATA3 8 datasets
ChIP MCF-7 ENCFF352QVM 457 bp overlap
ChIP MCF-7 ENCFF437NQS 364 bp overlap
ChIP MCF-7 GSE133072.GATA3.MCF-7 332 bp overlap
ChIP MCF-7 GSE122847.GATA3.MCF-7 313 bp overlap
ChIP MCF-7 GSE51274.GATA3.MCF-7 277 bp overlap
ChIP MCF-7 ENCSR000EWS.GATA3.MCF-7 223 bp overlap
ChIP MCF-7_sgScr GSE133072.GATA3.MCF-7_sgScr 237 bp overlap
ChIP T-47D ENCSR000BMX.GATA3.T-47D 150 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 394 bp overlap
ChIP DE DE-GATA4-2 359 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 261 bp overlap
GATA6 2 datasets
ChIP DE DE-GATA6-1 337 bp overlap
ChIP DE DE-GATA6-2 434 bp overlap
GLIS1 3 datasets
ChIP HEK293 ENCFF299RSE 130 bp overlap
ChIP HEK293 ENCFF299RSE 292 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 444 bp overlap
HDAC1 1 dataset
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.HDAC1.MCF-7_parental_4-hydroxytamoxifen 248 bp overlap
HDAC2 1 dataset
ChIP MCF-7 ENCSR000BTP.HDAC2.MCF-7 174 bp overlap
IKZF3 2 datasets
ChIP HEK293 ENCFF518OXG 371 bp overlap
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 248 bp overlap
INSM2 1 dataset
ChIP HEK293 ENCSR382GSF.INSM2.HEK293 254 bp overlap
KLF5 1 dataset
ChIP HEK293_E419Q GSE88976.KLF5.HEK293_E419Q 167 bp overlap
MAX 5 datasets
ChIP HeLa-S3 ENCSR000EZF.MAX.HeLa-S3 158 bp overlap
ChIP MCF-7 ENCFF169IXS 417 bp overlap
ChIP MCF-7 ENCSR000BUL.MAX.MCF-7 177 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 330 bp overlap
ChIP WTC11 ENCFF223QFY 492 bp overlap
MNT 2 datasets
ChIP MCF-7 ENCFF144ZFZ 433 bp overlap
ChIP MCF-7 ENCSR663ZZZ.MNT.MCF-7 267 bp overlap
MYC 1 dataset
ChIP MCF-7 ENCFF542NWJ 305 bp overlap
NANOG 2 datasets
ChIP WA01 ERP004238.NANOG.WA01 293 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 183 bp overlap
PATZ1 1 dataset
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 213 bp overlap
POLR2A 2 datasets
ChIP prostate gland ENCFF881OMH 415 bp overlap
ChIP stomach ENCFF820WZN 345 bp overlap
POU2F1 1 dataset
ChIP 22Rv1_Veh GSE123565.POU2F1.22Rv1_Veh 312 bp overlap
RAD21 1 dataset
ChIP MCF-7 ENCSR703TNG.RAD21.MCF-7 132 bp overlap
RREB1 1 dataset
ChIP HepG2 ENCFF986CSN 357 bp overlap
SIN3A 2 datasets
ChIP MCF-7 ENCFF521RDC 397 bp overlap
ChIP MCF-7 ENCSR000BUM.SIN3A.MCF-7 165 bp overlap
SMARCA4 3 datasets
ChIP MCF-7 GSE140185.SMARCA4.MCF-7 103 bp overlap
ChIP MCF-7_parental GSE123284.SMARCA4.MCF-7_parental 275 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 340 bp overlap
SMARCB1 1 dataset
ChIP MCF-7 GSE123284.SMARCB1.MCF-7 224 bp overlap
SNAI1 1 dataset
Motif DE_72h DE_72h-SNAI1_MA1558.2 7 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 352 bp overlap
SOX2 2 datasets
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 320 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 192 bp overlap
SP5 2 datasets
ChIP Hep-G2 ENCSR019NPF.SP5.Hep-G2 198 bp overlap
ChIP HepG2 ENCFF931FHV 349 bp overlap
SP7 1 dataset
ChIP HEK293 ENCSR468IJT.SP7.HEK293 311 bp overlap
SPDEF 1 dataset
ChIP MCF-7 ENCSR042GSX.SPDEF.MCF-7 188 bp overlap
SPIB 1 dataset
Motif DE_72h DE_72h-SPIB_MA0081.3 13 bp overlap
STAG1 1 dataset
ChIP MCF-7_E2_SHCTCF ERP000209.STAG1.MCF-7_E2_SHCTCF 122 bp overlap
TCF12 1 dataset
Motif DE_72h DE_72h-TCF12_MA1648.2 7 bp overlap
TCF3 1 dataset
Motif DE_72h DE_72h-TCF3_MA0522.4 7 bp overlap
TFAP2C 1 dataset
ChIP MCF-7_ETOH GSE23852.TFAP2C.MCF-7_ETOH 167 bp overlap
TFAP4 1 dataset
ChIP HepG2 ENCFF932XOY 397 bp overlap
TRPS1 1 dataset
ChIP MCF-7 GSE133072.TRPS1.MCF-7 319 bp overlap
WT1 2 datasets
ChIP HEK293 ENCFF906HIR 226 bp overlap
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 407 bp overlap
YY1 1 dataset
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 323 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 123 bp overlap
ZBTB44 1 dataset
ChIP HEK293 ENCSR076STQ.ZBTB44.HEK293 349 bp overlap
ZEB1 1 dataset
Motif DE_72h DE_72h-ZEB1_MA0103.4 6 bp overlap
ZFP57 1 dataset
ChIP hESC GSE115387.ZFP57.hESC 249 bp overlap
ZIC1 1 dataset
Motif DE_72h DE_72h-ZIC1_MA0696.1 14 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 414 bp overlap
ZIC4 1 dataset
Motif DE_72h DE_72h-ZIC4_MA0751.2 14 bp overlap
ZNF335 2 datasets
ChIP HEK293 ENCFF784SLD 323 bp overlap
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 492 bp overlap
ZNF610 2 datasets
ChIP HEK293 ENCFF778UKJ 435 bp overlap
ChIP HEK293 ENCSR691TXI.ZNF610.HEK293 443 bp overlap
Zfp335 1 dataset
Motif DE_72h DE_72h-Zfp335_MA2002.2 7 bp overlap
Zic1::Zic2 2 datasets
Motif DE_72h DE_72h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_72h DE_72h-Zic1Zic2_MA1628.2 7 bp overlap
Zic2 1 dataset
Motif DE_72h DE_72h-Zic2_MA1629.2 9 bp overlap
Zic3 2 datasets
Motif DE_72h DE_72h-Zic3_MA0697.3 7 bp overlap
Motif DE_72h DE_72h-Zic3_MA0697.3 7 bp overlap
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