chr13 : 40,355,207 40,355,904
697 bp 73 TFs 2 linked genes
This 697 bp open chromatin element is linked to LINC00598 and FOXO1 and is bound by 73 transcription factors.
Linked Genes
2 genes
Link type
Gene Expression Dist. to TSS Distance Link type
LINC00598 82.0 kb Distal Multiome
FOXO1 311.2 kb Distal Multiome+HiCAR
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:40,350,207 – 40,360,904
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
73 transcription factors
Source
Cell type
ASCL1 2 datasets
Motif DE_60h DE_60h-ASCL1_MA1631.2 9 bp overlap
Motif DE_72h DE_72h-ASCL1_MA1631.2 9 bp overlap
BRD3 1 dataset
ChIP MV4-11_DMSO GSE120715.BRD3.MV4-11_DMSO 209 bp overlap
BRD4 1 dataset
ChIP CD4_JG1 GSE33281.BRD4.CD4_JG1 226 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 208 bp overlap
CTCF 3 datasets
ChIP GM12867 ENCSR000DRH.CTCF.GM12867 133 bp overlap
ChIP SUM159 GSE46055.CTCF.SUM159 203 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 168 bp overlap
DMRTA2 1 dataset
Motif DE_72h DE_72h-DMRTA2_MA1478.2 6 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 219 bp overlap
EOMES 3 datasets
Motif DE_60h DE_60h-EOMES_MA0800.2 9 bp overlap
Motif DE_72h DE_72h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 198 bp overlap
ETV2::HOXB13 3 datasets
Motif DE_48h DE_48h-ETV2HOXB13_MA1943.2 13 bp overlap
Motif DE_60h DE_60h-ETV2HOXB13_MA1943.2 13 bp overlap
Motif DE_72h DE_72h-ETV2HOXB13_MA1943.2 13 bp overlap
FIGLA 5 datasets
Motif DE_36h DE_36h-FIGLA_MA0820.2 6 bp overlap
Motif DE_60h DE_60h-FIGLA_MA0820.2 6 bp overlap
Motif DE_60h DE_60h-FIGLA_MA0820.2 6 bp overlap
Motif DE_72h DE_72h-FIGLA_MA0820.2 6 bp overlap
Motif DE_72h DE_72h-FIGLA_MA0820.2 6 bp overlap
FOS 3 datasets
Motif DE_48h DE_48h-FOS_MA0476.2 8 bp overlap
Motif DE_60h DE_60h-FOS_MA0476.2 8 bp overlap
Motif DE_72h DE_72h-FOS_MA0476.2 8 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 528 bp overlap
ChIP DE DE-FOXA2-2 449 bp overlap
GATA2 1 dataset
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 154 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 589 bp overlap
ChIP DE DE-GATA4-2 697 bp overlap
ChIP foregut GSE117136.GATA4.foregut 536 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 610 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 342 bp overlap
GATA6 14 datasets
ChIP DE DE-GATA6-1 538 bp overlap
ChIP DE DE-GATA6-2 679 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 521 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 569 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 585 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 443 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 697 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 680 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 554 bp overlap
ChIP foregut GSE117136.GATA6.foregut 564 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 393 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 398 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 331 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 225 bp overlap
GRHL1 1 dataset
Motif DE_72h DE_72h-GRHL1_MA0647.2 10 bp overlap
GRHL2 1 dataset
Motif DE_72h DE_72h-GRHL2_MA1105.3 8 bp overlap
KLF4 1 dataset
ChIP keratinocyte_diff GSE57702.KLF4.keratinocyte_diff 197 bp overlap
KLF5 2 datasets
Motif DE_60h DE_60h-KLF5_MA0599.1 10 bp overlap
Motif DE_72h DE_72h-KLF5_MA0599.1 10 bp overlap
KLF7 2 datasets
Motif DE_60h DE_60h-KLF7_MA1959.2 8 bp overlap
Motif DE_72h DE_72h-KLF7_MA1959.2 8 bp overlap
MAF 3 datasets
Motif DE_60h DE_60h-MAF_MA1520.2 13 bp overlap
Motif DE_72h DE_72h-MAF_MA1520.2 13 bp overlap
ChIP keratinocyte_epidermal_PROLIF GSE52953.MAF.keratinocyte_epidermal_PROLIF 166 bp overlap
MAFA 2 datasets
Motif DE_60h DE_60h-MAFA_MA1521.2 13 bp overlap
Motif DE_72h DE_72h-MAFA_MA1521.2 13 bp overlap
MAFB 1 dataset
ChIP islet ERP004003.MAFB.islet 406 bp overlap
MAFK 2 datasets
Motif DE_60h DE_60h-MAFK_MA0496.4 10 bp overlap
Motif DE_72h DE_72h-MAFK_MA0496.4 10 bp overlap
MED1 1 dataset
ChIP HCT-116 GSE121798.MED1.HCT-116 437 bp overlap
MED26 1 dataset
ChIP HEK293T GSE121024.MED26.HEK293T 102 bp overlap
MGA 2 datasets
Motif DE_60h DE_60h-MGA_MA0801.1 8 bp overlap
Motif DE_72h DE_72h-MGA_MA0801.1 8 bp overlap
MYOD1 3 datasets
ChIP RD GSE137168.MYOD1.RD 181 bp overlap
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 697 bp overlap
ChIP RH4 GSE83726.MYOD1.RH4 169 bp overlap
Mafg 2 datasets
Motif DE_60h DE_60h-Mafg_MA0659.4 12 bp overlap
Motif DE_72h DE_72h-Mafg_MA0659.4 12 bp overlap
NIPBL 1 dataset
ChIP GP5D GSE51234.NIPBL.GP5D 345 bp overlap
NR2F2 3 datasets
ChIP liver ENCFF565JGD 442 bp overlap
ChIP liver ENCSR168SMX.NR2F2.liver 192 bp overlap
ChIP liver ENCSR338MMB.NR2F2.liver 160 bp overlap
NRIP1 1 dataset
ChIP MCF-7 ERP005838.NRIP1.MCF-7 176 bp overlap
RARA::RXRA 2 datasets
Motif DE_60h DE_60h-RARARXRA_MA0159.1 17 bp overlap
Motif DE_72h DE_72h-RARARXRA_MA0159.1 17 bp overlap
RELA 1 dataset
ChIP SGBS_TNF GSE64233.RELA.SGBS_TNF 50 bp overlap
RREB1 1 dataset
Motif DE_72h DE_72h-RREB1_MA0073.2 19 bp overlap
SIN3A 1 dataset
ChIP HUVEC-C GSE103245.SIN3A.HUVEC-C 162 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 638 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 697 bp overlap
SMC1A 1 dataset
ChIP primary-epidermal-keratinocyte_diff_d6 GSE84657.SMC1A.primary-epidermal-keratinocyte_diff_d6 329 bp overlap
SNAI2 1 dataset
ChIP RD GSE137168.SNAI2.RD 425 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 203 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 586 bp overlap
SOX8 1 dataset
ChIP RH4 GSE116344.SOX8.RH4 210 bp overlap
TBR1 2 datasets
Motif DE_60h DE_60h-TBR1_MA0802.2 9 bp overlap
Motif DE_72h DE_72h-TBR1_MA0802.2 9 bp overlap
TBX1 2 datasets
Motif DE_60h DE_60h-TBX1_MA0805.1 8 bp overlap
Motif DE_72h DE_72h-TBX1_MA0805.1 8 bp overlap
TBX15 2 datasets
Motif DE_60h DE_60h-TBX15_MA0803.1 8 bp overlap
Motif DE_72h DE_72h-TBX15_MA0803.1 8 bp overlap
TBX2 2 datasets
Motif DE_60h DE_60h-TBX2_MA0688.2 9 bp overlap
Motif DE_72h DE_72h-TBX2_MA0688.2 9 bp overlap
TBX20 2 datasets
Motif DE_60h DE_60h-TBX20_MA0689.1 11 bp overlap
Motif DE_72h DE_72h-TBX20_MA0689.1 11 bp overlap
TBX21 2 datasets
Motif DE_60h DE_60h-TBX21_MA0690.3 10 bp overlap
Motif DE_72h DE_72h-TBX21_MA0690.3 10 bp overlap
TBX3 2 datasets
Motif DE_60h DE_60h-TBX3_MA1566.3 9 bp overlap
Motif DE_72h DE_72h-TBX3_MA1566.3 9 bp overlap
TBX4 2 datasets
Motif DE_60h DE_60h-TBX4_MA0806.1 8 bp overlap
Motif DE_72h DE_72h-TBX4_MA0806.1 8 bp overlap
TBX5 2 datasets
Motif DE_60h DE_60h-TBX5_MA0807.1 8 bp overlap
Motif DE_72h DE_72h-TBX5_MA0807.1 8 bp overlap
TCF4 2 datasets
Motif DE_60h DE_60h-TCF4_MA0830.3 8 bp overlap
Motif DE_72h DE_72h-TCF4_MA0830.3 8 bp overlap
TEAD4 3 datasets
Motif DE_48h DE_48h-TEAD4_MA0809.3 8 bp overlap
Motif DE_60h DE_60h-TEAD4_MA0809.3 8 bp overlap
Motif DE_72h DE_72h-TEAD4_MA0809.3 8 bp overlap
TFCP2 1 dataset
Motif DE_72h DE_72h-TFCP2_MA1968.2 9 bp overlap
ZBTB24 1 dataset
Motif DE_72h DE_72h-ZBTB24_MA2330.1 10 bp overlap
ZEB1 5 datasets
Motif DE_36h DE_36h-ZEB1_MA0103.4 6 bp overlap
Motif DE_60h DE_60h-ZEB1_MA0103.4 6 bp overlap
Motif DE_60h DE_60h-ZEB1_MA0103.4 6 bp overlap
Motif DE_72h DE_72h-ZEB1_MA0103.4 6 bp overlap
Motif DE_72h DE_72h-ZEB1_MA0103.4 6 bp overlap
ZIC1 2 datasets
Motif DE_60h DE_60h-ZIC1_MA0696.1 14 bp overlap
Motif DE_72h DE_72h-ZIC1_MA0696.1 14 bp overlap
ZIC4 2 datasets
Motif DE_60h DE_60h-ZIC4_MA0751.2 14 bp overlap
Motif DE_72h DE_72h-ZIC4_MA0751.2 14 bp overlap
ZIC5 2 datasets
Motif DE_60h DE_60h-ZIC5_MA1584.2 15 bp overlap
Motif DE_72h DE_72h-ZIC5_MA1584.2 15 bp overlap
ZNF140 2 datasets
Motif DE_60h DE_60h-ZNF140_MA1589.2 19 bp overlap
Motif DE_72h DE_72h-ZNF140_MA1589.2 19 bp overlap
ZNF143 1 dataset
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 203 bp overlap
ZNF189 2 datasets
Motif DE_60h DE_60h-ZNF189_MA1725.2 9 bp overlap
Motif DE_72h DE_72h-ZNF189_MA1725.2 9 bp overlap
ZNF454 2 datasets
Motif DE_60h DE_60h-ZNF454_MA1712.2 17 bp overlap
Motif DE_72h DE_72h-ZNF454_MA1712.2 17 bp overlap
ZNF708 3 datasets
Motif DE_36h DE_36h-ZNF708_MA1730.2 9 bp overlap
Motif DE_60h DE_60h-ZNF708_MA1730.2 9 bp overlap
Motif DE_72h DE_72h-ZNF708_MA1730.2 9 bp overlap
ZNF766 4 datasets
Motif DE_60h DE_60h-ZNF766_MA2098.1 9 bp overlap
Motif DE_60h DE_60h-ZNF766_MA2098.1 9 bp overlap
Motif DE_72h DE_72h-ZNF766_MA2098.1 9 bp overlap
Motif DE_72h DE_72h-ZNF766_MA2098.1 9 bp overlap
ZNF8 2 datasets
Motif DE_60h DE_60h-ZNF8_MA1718.1 20 bp overlap
Motif DE_72h DE_72h-ZNF8_MA1718.1 20 bp overlap
Zic1::Zic2 2 datasets
Motif DE_60h DE_60h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_72h DE_72h-Zic1Zic2_MA1628.2 7 bp overlap
Zic2 2 datasets
Motif DE_60h DE_60h-Zic2_MA1629.2 9 bp overlap
Motif DE_72h DE_72h-Zic2_MA1629.2 9 bp overlap
Zic3 2 datasets
Motif DE_60h DE_60h-Zic3_MA0697.3 7 bp overlap
Motif DE_72h DE_72h-Zic3_MA0697.3 7 bp overlap