chr1 : 216,739,409 – 216,740,576

1,167 bp 63 TFs 0 linked genes

This 1.2 kb open chromatin element has no linked target genes and is bound by 63 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

63 transcription factors

AR 1 dataset

ChIP LNCaP_androgen-N_hypoxia-N GSE114732.AR.LNCaP_androgen-N_hypoxia-N 286 bp overlap

ARID1A 1 dataset

ChIP HAP1 GSE108387.ARID1A.HAP1 545 bp overlap

ATF2 1 dataset

ChIP WA01 ENCSR000BQU.ATF2.WA01 237 bp overlap

BCOR 1 dataset

ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 101 bp overlap

BRD4 1 dataset

ChIP SUM159PT_100nMtrametinib_8h GSE87418.BRD4.SUM159PT_100nMtrametinib_8h 98 bp overlap

CHD7 2 datasets

ChIP H1 ENCFF126NLU 104 bp overlap

ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 784 bp overlap

CTCF 2 datasets

ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 333 bp overlap

ChIP anterior-temporal-cortex_adult GSE116825.CTCF.anterior-temporal-cortex_adult 152 bp overlap

EP300 1 dataset

ChIP hESC GSE17917.EP300.hESC 213 bp overlap

ESR1 1 dataset

ChIP Ishikawa ENCSR000BQR.ESR1.Ishikawa 167 bp overlap

EWSR1-FLI1 1 dataset

Motif DE_12h DE_12h-EWSR1-FLI1_MA0149.1 18 bp overlap

EZH2 2 datasets

ChIP A-673 ENCSR179SAO.EZH2.A-673 715 bp overlap

ChIP HCT-116 ENCSR046HGP.EZH2.HCT-116 191 bp overlap

FOXP1 1 dataset

ChIP H9 GSE31006.FOXP1.H9 137 bp overlap

GATA1 1 dataset

ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 59 bp overlap

GATA1::TAL1 1 dataset

Motif DE_12h DE_12h-GATA1TAL1_MA0140.3 17 bp overlap

HDAC2 2 datasets

ChIP WA01 ENCSR000BNR.HDAC2.WA01 150 bp overlap

ChIP WA01 ENCSR000BNR.HDAC2.WA01 111 bp overlap

HNF4A 1 dataset

ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 104 bp overlap

HOXB13 1 dataset

ChIP prostate-cancer_PDX_167 GSE130408.HOXB13.prostate-cancer_PDX_167 57 bp overlap

HOXC13 1 dataset

Motif DE_12h DE_12h-HOXC13_MA0907.2 9 bp overlap

Hand1::Tcf3 1 dataset

Motif DE_12h DE_12h-Hand1Tcf3_MA0092.2 9 bp overlap

JUN 1 dataset

ChIP ESC S24-ESC-d0-JUN-exp1 262 bp overlap

MAFF 1 dataset

Motif DE_12h DE_12h-MAFF_MA0495.4 11 bp overlap

MTF2 1 dataset

ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 274 bp overlap

Mafb 1 dataset

Motif DE_12h DE_12h-Mafb_MA0117.3 11 bp overlap

Mecom 1 dataset

Motif DE_12h DE_12h-Mecom_MA0029.2 11 bp overlap

NANOG 12 datasets

ChIP GM23338 ENCSR061DGF.NANOG.GM23338 89 bp overlap

ChIP HUES-8 GSE109524.NANOG.HUES-8 1034 bp overlap

ChIP WA01 ERP004238.NANOG.WA01 292 bp overlap

ChIP WA01 ENCSR000BMT.NANOG.WA01 106 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 576 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 444 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 444 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 300 bp overlap

ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 292 bp overlap

ChIP hESC GSE18292.NANOG.hESC 95 bp overlap

ChIP hESC GSE18292.NANOG.hESC 223 bp overlap

ChIP hESC GSE20650.NANOG.hESC 145 bp overlap

NR1I2 1 dataset

Motif DE_12h DE_12h-NR1I2_MA1533.2 15 bp overlap

NR2C1 1 dataset

Motif DE_12h DE_12h-NR2C1_MA1535.2 6 bp overlap

NR2C2 1 dataset

Motif DE_12h DE_12h-NR2C2_MA1536.2 6 bp overlap

NR2F1 1 dataset

Motif DE_12h DE_12h-NR2F1_MA0017.3 12 bp overlap

Nr1H2 1 dataset

Motif DE_12h DE_12h-Nr1H2_MA1996.2 6 bp overlap

Nr1H4 1 dataset

Motif DE_12h DE_12h-Nr1H4_MA1110.3 6 bp overlap

Nr1h3 1 dataset

Motif DE_12h DE_12h-Nr1h3_MA2337.1 6 bp overlap

Nr2e3 1 dataset

Motif DE_12h DE_12h-Nr2e3_MA0164.2 6 bp overlap

POU2F1::SOX2 1 dataset

Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap

POU5F1 17 datasets

ChIP BG03 GSE21614.POU5F1.BG03 108 bp overlap

ChIP GM23338 ENCFF333SNB 170 bp overlap

ChIP H1 ENCFF698ZAP 136 bp overlap

ChIP HUES-8 GSE109524.POU5F1.HUES-8 971 bp overlap

ChIP NCCIT GSE36134.POU5F1.NCCIT 327 bp overlap

ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 908 bp overlap

ChIP WA01 ENCSR000BMU.POU5F1.WA01 178 bp overlap

ChIP WA01 ENCSR000BMU.POU5F1.WA01 148 bp overlap

ChIP WA09 GSE105028.POU5F1.WA09 219 bp overlap

ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 188 bp overlap

ChIP hESC ENCSR264RJX.POU5F1.hESC 109 bp overlap

ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 259 bp overlap

ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 141 bp overlap

ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 805 bp overlap

ChIP hiPSC GSE56567.POU5F1.hiPSC 148 bp overlap

ChIP hiPSC GSE56567.POU5F1.hiPSC 154 bp overlap

ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 148 bp overlap

PROX1 1 dataset

Motif DE_12h DE_12h-PROX1_MA0794.1 12 bp overlap

Pou5f1::Sox2 1 dataset

Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap

RAD21 4 datasets

ChIP HAP1 GSE152721.RAD21.HAP1 382 bp overlap

ChIP HAP1 GSE126634.RAD21.HAP1 256 bp overlap

ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 457 bp overlap

ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 253 bp overlap

RBPJ 2 datasets

Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap

REST 1 dataset

ChIP colorectal-cancer_CRC121_dissociated GSE112555.REST.colorectal-cancer_CRC121_dissociated 155 bp overlap

SALL3 1 dataset

ChIP hiPSC GSE104863.SALL3.hiPSC 204 bp overlap

SMAD2 2 datasets

Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap

SMAD3 1 dataset

ChIP BG03 GSE21614.SMAD3.BG03 151 bp overlap

SMARCA4 7 datasets

ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 403 bp overlap

ChIP NSC GSE125033.SMARCA4.NSC 340 bp overlap

ChIP NSC GSE125033.SMARCA4.NSC 317 bp overlap

ChIP WA09 GSE105028.SMARCA4.WA09 182 bp overlap

ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 129 bp overlap

ChIP hiPSC GSE124903.SMARCA4.hiPSC 839 bp overlap

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 870 bp overlap

SMARCB1 2 datasets

ChIP hiPSC GSE124903.SMARCB1.hiPSC 1068 bp overlap

ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 1054 bp overlap

SMARCC1 3 datasets

ChIP hiPSC GSE124903.SMARCC1.hiPSC 424 bp overlap

ChIP hiPSC GSE124903.SMARCC1.hiPSC 263 bp overlap

ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 969 bp overlap

SMC1 3 datasets

ChIP HAP1 GSE94992.SMC1.HAP1 301 bp overlap

ChIP HAP1_WaplKO-33 GSE94992.SMC1.HAP1_WaplKO-33 208 bp overlap

ChIP HAP1_WaplKO-33_SCC4KO GSE94992.SMC1.HAP1_WaplKO-33_SCC4KO 279 bp overlap

SOX2 7 datasets

ChIP HNSC GSE69479.SOX2.HNSC 759 bp overlap

ChIP OSKM GSE81899.SOX2.OSKM 154 bp overlap

ChIP hESC GSE18292.SOX2.hESC 140 bp overlap

ChIP hESC GSE69479.SOX2.hESC 160 bp overlap

ChIP hESC GSE18292.SOX2.hESC 149 bp overlap

ChIP hiPSC GSE56567.SOX2.hiPSC 349 bp overlap

ChIP hiPSC GSE56567.SOX2.hiPSC 191 bp overlap

SP1 2 datasets

ChIP WA01 ENCSR000BIR.SP1.WA01 142 bp overlap

ChIP WA01 ENCSR000BIR.SP1.WA01 88 bp overlap

T 1 dataset

ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 127 bp overlap

TCF12 1 dataset

ChIP WA01 ENCSR000BIT.TCF12.WA01 82 bp overlap

ZNF189 1 dataset

Motif DE_12h DE_12h-ZNF189_MA1725.2 9 bp overlap

ZNF24 1 dataset

Motif DE_12h DE_12h-ZNF24_MA1124.1 13 bp overlap

ZNF282 1 dataset

Motif DE_12h DE_12h-ZNF282_MA1154.2 15 bp overlap

ZNF341 1 dataset

Motif DE_12h DE_12h-ZNF341_MA1655.2 8 bp overlap

ZNF382 1 dataset

Motif DE_12h DE_12h-ZNF382_MA1594.1 24 bp overlap

ZNF398 1 dataset

ChIP BG01V GSE133630.ZNF398.BG01V 158 bp overlap

ZNF416 1 dataset

Motif DE_12h DE_12h-ZNF416_MA1979.2 10 bp overlap

ZNF418 1 dataset

Motif DE_12h DE_12h-ZNF418_MA1980.1 15 bp overlap

ZNF462 1 dataset

ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 142 bp overlap

ZNF582 1 dataset

Motif DE_12h DE_12h-ZNF582_MA1983.2 19 bp overlap

ZNF677 1 dataset

Motif DE_12h DE_12h-ZNF677_MA2101.1 12 bp overlap

ZSCAN16 1 dataset

Motif DE_12h DE_12h-ZSCAN16_MA2100.1 18 bp overlap