chr12 : 97,300,886 – 97,301,951
1,065 bp 106 TFs 0 linked genes
This 1.1 kb open chromatin element has no linked target genes and is bound by 106 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:97,295,886 – 97,306,951
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
106 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP NGP GSE134626.ARID1A.NGP 294 bp overlap
ARID2 1 dataset
ChIP NGP GSE134626.ARID2.NGP 158 bp overlap
ASCL1 1 dataset
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 214 bp overlap
Atf3 1 dataset
Motif DE_60h DE_60h-Atf3_MA1988.2 7 bp overlap
BACH1 1 dataset
Motif DE_60h DE_60h-BACH1_MA1633.2 9 bp overlap
BACH2 1 dataset
Motif DE_60h DE_60h-BACH2_MA1101.3 11 bp overlap
BATF 1 dataset
Motif DE_60h DE_60h-BATF_MA1634.2 7 bp overlap
BATF3 1 dataset
Motif DE_60h DE_60h-BATF3_MA0835.3 7 bp overlap
BATF::JUN 1 dataset
Motif DE_60h DE_60h-BATFJUN_MA0462.3 7 bp overlap
BHLHE22 3 datasets
Motif DE_36h DE_36h-BHLHE22_MA1635.2 6 bp overlap
Motif DE_48h DE_48h-BHLHE22_MA1635.2 6 bp overlap
Motif DE_60h DE_60h-BHLHE22_MA1635.2 6 bp overlap
BNC2 1 dataset
Motif DE_60h DE_60h-BNC2_MA1928.2 7 bp overlap
BRD4 2 datasets
ChIP THP-1_DMSO-PMA GSE138084.BRD4.THP-1_DMSO-PMA 276 bp overlap
ChIP THP-1_DMSO-PMA GSE138084.BRD4.THP-1_DMSO-PMA 161 bp overlap
Bach1::Mafk 1 dataset
Motif DE_60h DE_60h-Bach1Mafk_MA0591.2 12 bp overlap
CDX1 1 dataset
Motif DE_60h DE_60h-CDX1_MA0878.3 10 bp overlap
CDX2 1 dataset
Motif DE_60h DE_60h-CDX2_MA0465.3 8 bp overlap
CDX4 1 dataset
Motif DE_60h DE_60h-CDX4_MA1473.2 9 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 378 bp overlap
Crx 3 datasets
Motif DE_36h DE_36h-Crx_MA0467.3 6 bp overlap
Motif DE_48h DE_48h-Crx_MA0467.3 6 bp overlap
Motif DE_60h DE_60h-Crx_MA0467.3 6 bp overlap
Dmbx1 3 datasets
Motif DE_36h DE_36h-Dmbx1_MA0883.2 10 bp overlap
Motif DE_48h DE_48h-Dmbx1_MA0883.2 10 bp overlap
Motif DE_60h DE_60h-Dmbx1_MA0883.2 10 bp overlap
EOMES 2 datasets
ChIP hESC GSE26097.EOMES.hESC 317 bp overlap
ChIP hESC GSE26097.EOMES.hESC 322 bp overlap
EP300 2 datasets
ChIP SK-N-SH ENCFF829RWA 377 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 212 bp overlap
EWSR1-FLI1 1 dataset
Motif DE_60h DE_60h-EWSR1-FLI1_MA0149.1 18 bp overlap
FOS 3 datasets
Motif DE_60h DE_60h-FOS_MA0476.2 8 bp overlap
ChIP endothelial cell of umbilical vein ENCFF415XBG 401 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVU.FOS.endothelial_umbilical-vein 344 bp overlap
FOS::JUN 1 dataset
Motif DE_60h DE_60h-FOSJUN_MA0099.4 9 bp overlap
FOS::JUNB 1 dataset
Motif DE_60h DE_60h-FOSJUNB_MA1134.2 9 bp overlap
FOS::JUND 1 dataset
Motif DE_60h DE_60h-FOSJUND_MA1141.2 9 bp overlap
FOSB::JUNB 1 dataset
Motif DE_60h DE_60h-FOSBJUNB_MA1135.2 9 bp overlap
FOSL1 1 dataset
Motif DE_60h DE_60h-FOSL1_MA0477.3 9 bp overlap
FOSL1::JUN 1 dataset
Motif DE_60h DE_60h-FOSL1JUN_MA1128.2 9 bp overlap
FOSL1::JUNB 1 dataset
Motif DE_60h DE_60h-FOSL1JUNB_MA1137.2 9 bp overlap
FOSL1::JUND 1 dataset
Motif DE_60h DE_60h-FOSL1JUND_MA1142.2 8 bp overlap
FOSL2 1 dataset
Motif DE_60h DE_60h-FOSL2_MA0478.2 10 bp overlap
FOSL2::JUN 1 dataset
Motif DE_60h DE_60h-FOSL2JUN_MA1130.2 9 bp overlap
FOSL2::JUNB 1 dataset
Motif DE_60h DE_60h-FOSL2JUNB_MA1138.2 9 bp overlap
FOSL2::JUND 1 dataset
Motif DE_60h DE_60h-FOSL2JUND_MA1144.2 9 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 889 bp overlap
ChIP DE DE-FOXA2-2 416 bp overlap
ChIP DE DE-FOXA2-2 492 bp overlap
FOXO4 1 dataset
ChIP HepG2 ENCFF909ISL 473 bp overlap
GATA2 2 datasets
ChIP SK-N-SH ENCFF764OZD 417 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 218 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 1065 bp overlap
ChIP DE DE-GATA4-2 1065 bp overlap
GATA6 14 datasets
ChIP DE DE-GATA6-1 486 bp overlap
ChIP DE DE-GATA6-1 477 bp overlap
ChIP DE DE-GATA6-2 1065 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 473 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 405 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 455 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 401 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 545 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 361 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 1065 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 1065 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 534 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 413 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 387 bp overlap
GSC 3 datasets
Motif DE_36h DE_36h-GSC_MA0648.2 6 bp overlap
Motif DE_48h DE_48h-GSC_MA0648.2 6 bp overlap
Motif DE_60h DE_60h-GSC_MA0648.2 6 bp overlap
GSC2 3 datasets
Motif DE_36h DE_36h-GSC2_MA0891.2 6 bp overlap
Motif DE_48h DE_48h-GSC2_MA0891.2 6 bp overlap
Motif DE_60h DE_60h-GSC2_MA0891.2 6 bp overlap
HAND2 1 dataset
ChIP Kelly GSE94822.HAND2.Kelly 233 bp overlap
HOXA10 1 dataset
Motif DE_60h DE_60h-HOXA10_MA0899.2 9 bp overlap
HOXB13 1 dataset
Motif DE_60h DE_60h-HOXB13_MA0901.3 9 bp overlap
HOXD9 1 dataset
Motif DE_60h DE_60h-HOXD9_MA0913.3 9 bp overlap
Hmga1 1 dataset
Motif DE_60h DE_60h-Hmga1_MA2124.1 8 bp overlap
Hoxa13 1 dataset
Motif DE_60h DE_60h-Hoxa13_MA0650.4 8 bp overlap
Hoxd13 1 dataset
Motif DE_60h DE_60h-Hoxd13_MA0909.4 7 bp overlap
IKZF2 3 datasets
Motif DE_36h DE_36h-IKZF2_MA2326.1 6 bp overlap
Motif DE_48h DE_48h-IKZF2_MA2326.1 6 bp overlap
Motif DE_60h DE_60h-IKZF2_MA2326.1 6 bp overlap
Isl1 1 dataset
Motif DE_60h DE_60h-Isl1_MA1608.2 7 bp overlap
JDP2 1 dataset
Motif DE_60h DE_60h-JDP2_MA0655.1 9 bp overlap
JUN 6 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 419 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 484 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 440 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 493 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 392 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 470 bp overlap
JUN::JUNB 1 dataset
Motif DE_60h DE_60h-JUNJUNB_MA1132.2 8 bp overlap
JUNB 2 datasets
ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 178 bp overlap
Motif DE_60h DE_60h-JUNB_MA0490.3 9 bp overlap
JUND 1 dataset
Motif DE_60h DE_60h-JUND_MA0491.3 9 bp overlap
Jun 4 datasets
Motif DE_36h DE_36h-Jun_MA0489.3 8 bp overlap
Motif DE_48h DE_48h-Jun_MA0489.3 8 bp overlap
Motif DE_60h DE_60h-Jun_MA0489.3 8 bp overlap
Motif DE_60h DE_60h-Jun_MA0489.3 8 bp overlap
KDM1A 1 dataset
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 183 bp overlap
MAF::NFE2 1 dataset
Motif DE_60h DE_60h-MAFNFE2_MA0501.2 11 bp overlap
MAFG::NFE2L1 1 dataset
Motif DE_60h DE_60h-MAFGNFE2L1_MA0089.3 11 bp overlap
MAFK 1 dataset
Motif DE_60h DE_60h-MAFK_MA0496.4 10 bp overlap
MAX 2 datasets
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 322 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 305 bp overlap
MGA::EVX1 1 dataset
Motif DE_60h DE_60h-MGAEVX1_MA1960.2 11 bp overlap
MYC 1 dataset
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 247 bp overlap
MYCN 1 dataset
ChIP CHP-134 GSE129588.MYCN.CHP-134 214 bp overlap
Mafg 1 dataset
Motif DE_60h DE_60h-Mafg_MA0659.4 12 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 190 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 329 bp overlap
NFE2 1 dataset
Motif DE_60h DE_60h-NFE2_MA0841.2 10 bp overlap
Neurod2 3 datasets
Motif DE_36h DE_36h-Neurod2_MA1993.2 6 bp overlap
Motif DE_48h DE_48h-Neurod2_MA1993.2 6 bp overlap
Motif DE_60h DE_60h-Neurod2_MA1993.2 6 bp overlap
Nfe2l2 1 dataset
Motif DE_60h DE_60h-Nfe2l2_MA0150.3 11 bp overlap
OTX1 3 datasets
Motif DE_36h DE_36h-OTX1_MA0711.2 6 bp overlap
Motif DE_48h DE_48h-OTX1_MA0711.2 6 bp overlap
Motif DE_60h DE_60h-OTX1_MA0711.2 6 bp overlap
Olig2 3 datasets
Motif DE_36h DE_36h-Olig2_MA1997.2 6 bp overlap
Motif DE_48h DE_48h-Olig2_MA1997.2 6 bp overlap
Motif DE_60h DE_60h-Olig2_MA1997.2 6 bp overlap
PAX3-FOXO1 1 dataset
ChIP RH4 GSE140115.PAX3-FOXO1.RH4 195 bp overlap
PITX1 3 datasets
Motif DE_36h DE_36h-PITX1_MA0682.3 6 bp overlap
Motif DE_48h DE_48h-PITX1_MA0682.3 6 bp overlap
Motif DE_60h DE_60h-PITX1_MA0682.3 6 bp overlap
PITX2 3 datasets
Motif DE_36h DE_36h-PITX2_MA1547.2 8 bp overlap
Motif DE_48h DE_48h-PITX2_MA1547.2 8 bp overlap
Motif DE_60h DE_60h-PITX2_MA1547.2 8 bp overlap
PITX3 4 datasets
Motif DE_36h DE_36h-PITX3_MA0714.2 6 bp overlap
Motif DE_48h DE_48h-PITX3_MA0714.2 6 bp overlap
Motif DE_60h DE_60h-PITX3_MA0714.2 6 bp overlap
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 407 bp overlap
POU5F1 1 dataset
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 149 bp overlap
Prdm5 3 datasets
Motif DE_36h DE_36h-Prdm5_MA1999.2 11 bp overlap
Motif DE_48h DE_48h-Prdm5_MA1999.2 11 bp overlap
Motif DE_60h DE_60h-Prdm5_MA1999.2 11 bp overlap
RAD21 1 dataset
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 127 bp overlap
RBBP4 1 dataset
ChIP SCMC GSE155861.RBBP4.SCMC 284 bp overlap
REST 3 datasets
Motif DE_36h DE_36h-REST_MA0138.3 20 bp overlap
Motif DE_48h DE_48h-REST_MA0138.3 20 bp overlap
Motif DE_60h DE_60h-REST_MA0138.3 20 bp overlap
RHOXF1 3 datasets
Motif DE_36h DE_36h-RHOXF1_MA0719.2 6 bp overlap
Motif DE_48h DE_48h-RHOXF1_MA0719.2 6 bp overlap
Motif DE_60h DE_60h-RHOXF1_MA0719.2 6 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 231 bp overlap
SMAD2-3 4 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 490 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 374 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 332 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 403 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 288 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 254 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 1049 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 1041 bp overlap
SMARCA4 5 datasets
ChIP NGP GSE134626.SMARCA4.NGP 369 bp overlap
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 307 bp overlap
ChIP NGP_ARID1A-mut1 GSE134626.SMARCA4.NGP_ARID1A-mut1 277 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 150 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 406 bp overlap
SMARCB1 1 dataset
ChIP hiPSC GSE124903.SMARCB1.hiPSC 193 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 301 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 268 bp overlap
SOX17_M 2 datasets
ChIP DE_D2 DED2-SOX17-M_Batch_II 352 bp overlap
ChIP DE_D2 DED2-SOX17-M_Batch_II 303 bp overlap
SOX21 1 dataset
Motif DE_60h DE_60h-SOX21_MA0866.1 15 bp overlap
SP5 2 datasets
Motif DE_48h DE_48h-SP5_MA1965.2 6 bp overlap
Motif DE_60h DE_60h-SP5_MA1965.2 6 bp overlap
SPIB 1 dataset
Motif DE_60h DE_60h-SPIB_MA0081.3 13 bp overlap
Sox1 1 dataset
Motif DE_60h DE_60h-Sox1_MA0870.1 15 bp overlap
Stat4 3 datasets
Motif DE_36h DE_36h-Stat4_MA0518.2 10 bp overlap
Motif DE_48h DE_48h-Stat4_MA0518.2 10 bp overlap
Motif DE_60h DE_60h-Stat4_MA0518.2 10 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 179 bp overlap
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 313 bp overlap
TBX2 1 dataset
ChIP Kelly GSE94822.TBX2.Kelly 261 bp overlap
TFAP4 4 datasets
Motif DE_36h DE_36h-TFAP4_MA0691.1 10 bp overlap
Motif DE_48h DE_48h-TFAP4_MA0691.1 10 bp overlap
Motif DE_60h DE_60h-TFAP4_MA0691.1 10 bp overlap
ChIP DLD-1 GSE46935.TFAP4.DLD-1 251 bp overlap
TFEB 1 dataset
ChIP HUVEC-C GSE88894.TFEB.HUVEC-C 253 bp overlap
Tcf12 3 datasets
Motif DE_36h DE_36h-Tcf12_MA0521.3 6 bp overlap
Motif DE_48h DE_48h-Tcf12_MA0521.3 6 bp overlap
Motif DE_60h DE_60h-Tcf12_MA0521.3 6 bp overlap
Twist2 3 datasets
Motif DE_36h DE_36h-Twist2_MA0633.3 6 bp overlap
Motif DE_48h DE_48h-Twist2_MA0633.3 6 bp overlap
Motif DE_60h DE_60h-Twist2_MA0633.3 6 bp overlap
ZNF135 3 datasets
Motif DE_36h DE_36h-ZNF135_MA1587.1 14 bp overlap
Motif DE_48h DE_48h-ZNF135_MA1587.1 14 bp overlap
Motif DE_60h DE_60h-ZNF135_MA1587.1 14 bp overlap
ZNF549 3 datasets
Motif DE_36h DE_36h-ZNF549_MA1728.2 8 bp overlap
Motif DE_48h DE_48h-ZNF549_MA1728.2 8 bp overlap
Motif DE_60h DE_60h-ZNF549_MA1728.2 8 bp overlap
ZNF701 3 datasets
Motif DE_36h DE_36h-ZNF701_MA1987.2 17 bp overlap
Motif DE_48h DE_48h-ZNF701_MA1987.2 17 bp overlap
Motif DE_60h DE_60h-ZNF701_MA1987.2 17 bp overlap
ZSCAN16 3 datasets
Motif DE_36h DE_36h-ZSCAN16_MA2100.1 18 bp overlap
Motif DE_48h DE_48h-ZSCAN16_MA2100.1 18 bp overlap
Motif DE_60h DE_60h-ZSCAN16_MA2100.1 18 bp overlap
Zfp335 1 dataset
Motif DE_60h DE_60h-Zfp335_MA2002.2 7 bp overlap
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